Mercurial > repos > galaxyp > msstats
changeset 2:52ac6fde9a5b draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msstats commit 414edbbd89f9bc83b81289e409c9b688c8c1e40f"
| author | galaxyp |
|---|---|
| date | Fri, 14 Aug 2020 12:19:14 -0400 |
| parents | 3e2606fa85bf |
| children | 8212e342e482 |
| files | msstats.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/msstats.xml Sat Jul 25 14:49:56 2020 -0400 +++ b/msstats.xml Fri Aug 14 12:19:14 2020 -0400 @@ -232,7 +232,7 @@ #if 'volcanoplot' in $group.select_outputs \# volcano plot -groupComparisonPlots(data = comparisons\$ComparisonResult, type = 'VolcanoPlot', +groupComparisonPlots(data = comparisons\$ComparisonResult, type = 'VolcanoPlot',ProteinName=FALSE, width=5, height=5, address="MSStats_group_") #end if @@ -704,9 +704,9 @@ - Annotations as tabular file are needed for all input options except MSstats format - - 4 columns: Filename, Condition, Bioreplicate, Run; additional 5th column only for MaxQuant: Isotopelabeltype + - 4 columns with exactly these headers: Raw.file, Condition, BioReplicate, Run; additional 5th column only for MaxQuant: IsotopeLabelType - - Filename: the file name has to be exactly as it appears in the other input files (e.g. S1207.raw.thermo; in/AA12_mzML.mzML) + - Raw.file: File name that has to match exactly as it appears in the other input files (e.g. S1207.raw.thermo; in/AA12_mzML.mzML) - all other columns: see description above for MSstats format columns - Comparison matrix as tabular file