comparison msstatstmt.xml @ 1:b79d4c961009 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msstatstmt commit 5ac4f6093606746adb0d40fe4f73871f5934d091"

0:fd3dc69b78ff

                <param name="msstatstmt_input" type="data" format="tabular" label="MStatsTMT (11 column format)"/>
            </when>
            <when value="MaxQuant">
                <param name="evidence" type="data" format="tabular" label="evidence.txt - feature-level data"/>
                <param name="proteinGroups" type="data" format="tabular" label="proteinGroups.txt" help="It needs to matching protein group ID. If proteinGroups=NULL, use 'Proteins' column in 'evidence.txt'"/>
                <param name="annotation" type="data" format="tabular" label="annotation.txt data which includes Raw.file, Condition, BioReplicate, Run, IsotopeLabelType information" />
                <param name="proteinID" type="select" label="Select Protein ID in evidence.txt">
                    <option value="Proteins">Protein column</option>
                    <option value="Leading.razor.protein">Leading razor protein column</option>
                </param>
                <section name="input_options" title="MaxQtoMSstatsTMTFormat Options" expanded="false">

1:b79d4c961009

                <param name="msstatstmt_input" type="data" format="tabular" label="MStatsTMT (11 column format)"/>
            </when>
            <when value="MaxQuant">
                <param name="evidence" type="data" format="tabular" label="evidence.txt - feature-level data"/>
                <param name="proteinGroups" type="data" format="tabular" label="proteinGroups.txt" help="It needs to matching protein group ID. If proteinGroups=NULL, use 'Proteins' column in 'evidence.txt'"/>
                <param name="annotation" type="data" format="tabular" label="annotation.txt" help="Data frame which contains column Run, Fraction, TechRepMixture, Channel, Condition, BioReplicate, Mixture." />
                <param name="proteinID" type="select" label="Select Protein ID in evidence.txt">
                    <option value="Proteins">Protein column</option>
                    <option value="Leading.razor.protein">Leading razor protein column</option>
                </param>
                <section name="input_options" title="MaxQtoMSstatsTMTFormat Options" expanded="false">