# HG changeset patch # User galaxyp # Date 1614423265 0 # Node ID 782bd55b000b32c885a99aaa8f5fa40d826ba94a # Parent b79d4c9610091c022a17e26c77d11a26e4227529 "planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/msstatstmt commit 1272b32052ad8b986c1d3bd14f7cb9e3e921c74f" diff -r b79d4c961009 -r 782bd55b000b msstatstmt.xml --- a/msstatstmt.xml Fri Feb 05 18:42:55 2021 +0000 +++ b/msstatstmt.xml Sat Feb 27 10:54:25 2021 +0000 @@ -1,8 +1,8 @@ protein significance analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling - 1.8.0 - 0 + 1.8.2 + 1 @@ -22,6 +22,7 @@ @@ -125,6 +189,7 @@ + @@ -156,8 +221,24 @@ + + + + + + + +
+ + + + + + +
+ -
+
@@ -171,6 +252,35 @@
+
+ + + + + + + + + + + + + + +
+ + + + + + + + + + + +
+
@@ -201,61 +311,103 @@ + + Heatmap requires more than one comparison + + + + + +
+ + + + + + + + + + + + + + + + + + + + + ’protein’ means that protein dendrogram is computed and reordered based on protein means (the order of row is changed). ’comparison’ means comparison dendrogram is computed and reordered based on comparison means (the order of comparison is changed). ’both’ means to reorder both protein and comparison. + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ -
- - - - - - - - - - - - - - - - - - - - - - - - - -
- + 'msstats_log' in selected_outputs - + 'msstatstmt_log' in selected_outputs 'r_script' in selected_outputs + + 'quant' in selected_outputs + 'ProfilePlot' in selected_outputs 'QCPlot' in selected_outputs - - group['group_comparison'] == 'true' + + group['group_comparison'] == 'true' and 'comparison_result' in group['selected_group_outputs'] + + + group['group_comparison'] == 'true' and 'VolcanoPlot' in group['selected_group_outputs'] + + + group['group_comparison'] == 'true' and 'Heatmap' in group['selected_group_outputs'] + + + group['group_comparison'] == 'true' and 'ComparisonPlot' in group['selected_group_outputs'] @@ -277,13 +429,13 @@ - + - + @@ -296,6 +448,7 @@ + @@ -312,16 +465,24 @@ + + - + + - + + + + + + @@ -330,6 +491,23 @@ + + + + + + + + + + + + + + + + +