Mercurial > repos > galaxyp > myrimatch
comparison test-data/201208-378803-mm.pepXML @ 1:1881935e5351 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot/myrimatch commit 9eee537ea6d1e33b21596390767e7701f95a67d3
| author | galaxyp |
|---|---|
| date | Wed, 01 Feb 2017 20:53:23 -0500 |
| parents | |
| children |
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| 0:23b316fad2b0 | 1:1881935e5351 |
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| 1 <?xml version="1.0" encoding="ISO-8859-1"?> | |
| 2 <msms_pipeline_analysis date="2015-09-03T15:49:50" summary_xml="201208-378803.pepXML" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v117.xsd"> | |
| 3 <analysis_summary analysis="MyriMatch" version="2.2.8634" time="2015-09-03T15:49:50"/> | |
| 4 <msms_run_summary base_name="201208-378803" raw_data_type="" raw_data=""> | |
| 5 <sample_enzyme name="Trypsin/P" independent="false" fidelity="semispecific"> | |
| 6 <specificity sense="C" cut="KR" no_cut="" min_spacing="1"/> | |
| 7 </sample_enzyme> | |
| 8 <search_summary base_name="201208-378803" search_engine="MyriMatch" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" out_data_type="" out_data=""> | |
| 9 <search_database local_path="cow.protein.PRG2012-subset.fasta" database_name="SDB" type="AA"/> | |
| 10 <enzymatic_search_constraint enzyme="Trypsin/P" max_num_internal_cleavages="2" min_number_termini="1"/> | |
| 11 <aminoacid_modification aminoacid="M" massdiff="15.9949" mass="147.0353846062" variable="Y" description="Oxidation"/> | |
| 12 <aminoacid_modification aminoacid="Q" massdiff="-17.026" mass="111.0325775114" peptide_terminus="n" variable="Y"/> | |
| 13 <aminoacid_modification aminoacid="Q" massdiff="0.984016" mass="129.0425935114" variable="Y" description="Deamidated"/> | |
| 14 <aminoacid_modification aminoacid="N" massdiff="0.984016" mass="115.0269434472" variable="Y" description="Deamidated"/> | |
| 15 <aminoacid_modification aminoacid="C" massdiff="58.00548" mass="161.0146644778" variable="N" description="Carboxymethyl"/> | |
| 16 <parameter name="Config: AvgPrecursorMzTolerance" value="1.5mz"/> | |
| 17 <parameter name="Config: ClassSizeMultiplier" value="2"/> | |
| 18 <parameter name="Config: CleavageRules" value="Trypsin/P"/> | |
| 19 <parameter name="Config: ComputeXCorr" value="1"/> | |
| 20 <parameter name="Config: DecoyPrefix" value="XXX_"/> | |
| 21 <parameter name="Config: DynamicMods" value="M * 15.9949 (Q * -17.026 [QN] * 0.984016"/> | |
| 22 <parameter name="Config: EstimateSearchTimeOnly" value="0"/> | |
| 23 <parameter name="Config: FragmentMzTolerance" value="0.5mz"/> | |
| 24 <parameter name="Config: FragmentationAutoRule" value="1"/> | |
| 25 <parameter name="Config: FragmentationRule" value="cid"/> | |
| 26 <parameter name="Config: KeepUnadjustedPrecursorMz" value="0"/> | |
| 27 <parameter name="Config: MaxDynamicMods" value="2"/> | |
| 28 <parameter name="Config: MaxFragmentChargeState" value="0"/> | |
| 29 <parameter name="Config: MaxMissedCleavages" value="2"/> | |
| 30 <parameter name="Config: MaxPeakCount" value="300"/> | |
| 31 <parameter name="Config: MaxPeptideLength" value="75"/> | |
| 32 <parameter name="Config: MaxPeptideMass" value="10000"/> | |
| 33 <parameter name="Config: MaxPeptideVariants" value="1000000"/> | |
| 34 <parameter name="Config: MaxResultRank" value="3"/> | |
| 35 <parameter name="Config: MinMatchedFragments" value="5"/> | |
| 36 <parameter name="Config: MinPeptideLength" value="5"/> | |
| 37 <parameter name="Config: MinPeptideMass" value="0"/> | |
| 38 <parameter name="Config: MinResultScore" value="9.9999999999999995e-08"/> | |
| 39 <parameter name="Config: MinTerminiCleavages" value="1"/> | |
| 40 <parameter name="Config: MonoPrecursorMzTolerance" value="50ppm"/> | |
| 41 <parameter name="Config: MonoisotopeAdjustmentSet" value="[-1,2] "/> | |
| 42 <parameter name="Config: NumBatches" value="50"/> | |
| 43 <parameter name="Config: NumChargeStates" value="5"/> | |
| 44 <parameter name="Config: NumIntensityClasses" value="3"/> | |
| 45 <parameter name="Config: NumMzFidelityClasses" value="3"/> | |
| 46 <parameter name="Config: OutputFormat" value="pepXML"/> | |
| 47 <parameter name="Config: OutputSuffix" value=""/> | |
| 48 <parameter name="Config: PrecursorMzToleranceRule" value="mono"/> | |
| 49 <parameter name="Config: PreferIntenseComplements" value="1"/> | |
| 50 <parameter name="Config: ProteinDatabase" value="cow.protein.PRG2012-subset.fasta"/> | |
| 51 <parameter name="Config: ProteinListFilters" value=""/> | |
| 52 <parameter name="Config: ProteinSamplingTime" value="15"/> | |
| 53 <parameter name="Config: ResultsPerBatch" value="200000"/> | |
| 54 <parameter name="Config: SpectrumListFilters" value="peakPicking true 2-"/> | |
| 55 <parameter name="Config: StaticMods" value="C 58.00548"/> | |
| 56 <parameter name="Config: StatusUpdateFrequency" value="5"/> | |
| 57 <parameter name="Config: TicCutoffPercentage" value="0.97999999999999998"/> | |
| 58 <parameter name="Config: UseMultipleProcessors" value="1"/> | |
| 59 <parameter name="Config: UseSmartPlusThreeModel" value="0"/> | |
| 60 <parameter name="Config: WorkingDirectory" value="/galaxy-central"/> | |
| 61 <parameter name="PeakCounts: 1stQuartile: Filtered" value="115"/> | |
| 62 <parameter name="PeakCounts: 1stQuartile: Original" value="120"/> | |
| 63 <parameter name="PeakCounts: 2ndQuartile: Filtered" value="145"/> | |
| 64 <parameter name="PeakCounts: 2ndQuartile: Original" value="154"/> | |
| 65 <parameter name="PeakCounts: 3rdQuartile: Filtered" value="177"/> | |
| 66 <parameter name="PeakCounts: 3rdQuartile: Original" value="180"/> | |
| 67 <parameter name="PeakCounts: Mean: Filtered" value="149"/> | |
| 68 <parameter name="PeakCounts: Mean: Original" value="157"/> | |
| 69 <parameter name="PeakCounts: Min/Max: Filtered" value="40 / 296"/> | |
| 70 <parameter name="PeakCounts: Min/Max: Original" value="42 / 471"/> | |
| 71 <parameter name="SearchEngine: Name" value="MyriMatch"/> | |
| 72 <parameter name="SearchEngine: Version" value="2.2.8634"/> | |
| 73 <parameter name="SearchStats: Nodes" value="1"/> | |
| 74 <parameter name="SearchStats: Overall" value="144 proteins; 516261 peptides; 2500621 variants; 1034167 comparisons"/> | |
| 75 <parameter name="SearchTime: Duration" value="15.5659609 seconds"/> | |
| 76 <parameter name="SearchTime: Started" value="15:49:34 on 09/03/2015"/> | |
| 77 <parameter name="SearchTime: Stopped" value="15:49:50 on 09/03/2015"/> | |
| 78 </search_summary> | |
| 79 <spectrum_query spectrum="201208-378803.1.1.2" spectrumNativeID="sample=1 period=1 cycle=1181 experiment=2" start_scan="1" end_scan="1" precursor_neutral_mass="1011.474906260116" assumed_charge="2" index="1" retention_time_sec="614.35099999998"> | |
| 80 <search_result num_target_comparisons="0" num_decoy_comparisons="0"> | |
| 81 <search_hit hit_rank="1" peptide="RSPALGAANR" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|27806851|ref|NP_776358.1|" num_tot_proteins="4" calc_neutral_pep_mass="1011.557375519" massdiff="0.082469258884" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="9" tot_num_ions="19"> | |
| 82 <alternative_protein protein="gi|528993971|ref|XP_005219929.1|"/> | |
| 83 <alternative_protein protein="gi|528993973|ref|XP_005219930.1|"/> | |
| 84 <alternative_protein protein="gi|528993975|ref|XP_005219931.1|"/> | |
| 85 <search_score name="mvh" value="20.943884244483"/> | |
| 86 <search_score name="mzFidelity" value="40.011435006046"/> | |
| 87 <search_score name="xcorr" value="2.113353934546164"/> | |
| 88 </search_hit> | |
| 89 <search_hit hit_rank="2" peptide="RSPALGAANR" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|27806851|ref|NP_776358.1|" num_tot_proteins="4" calc_neutral_pep_mass="1012.541391519" massdiff="0.057820343284" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="8" tot_num_ions="19"> | |
| 90 <alternative_protein protein="gi|528993971|ref|XP_005219929.1|"/> | |
| 91 <alternative_protein protein="gi|528993973|ref|XP_005219930.1|"/> | |
| 92 <alternative_protein protein="gi|528993975|ref|XP_005219931.1|"/> | |
| 93 <modification_info> | |
| 94 <mod_aminoacid_mass position="9" mass="115.0269434472"/> | |
| 95 </modification_info> | |
| 96 <search_score name="mvh" value="19.008347302137"/> | |
| 97 <search_score name="mzFidelity" value="35.588423710657"/> | |
| 98 <search_score name="xcorr" value="1.9616309176657931"/> | |
| 99 </search_hit> | |
| 100 <search_hit hit_rank="3" peptide="QLPKSNAPR" peptide_prev_aa="K" peptide_next_aa="V" protein="gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" calc_neutral_pep_mass="1010.5508935728" massdiff="0.084652228284" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="6" tot_num_ions="17"> | |
| 101 <modification_info> | |
| 102 <mod_aminoacid_mass position="6" mass="115.0269434472"/> | |
| 103 </modification_info> | |
| 104 <search_score name="mvh" value="12.941640349312"/> | |
| 105 <search_score name="mzFidelity" value="27.424896373573"/> | |
| 106 <search_score name="xcorr" value="1.3971794629675336"/> | |
| 107 </search_hit> | |
| 108 <search_hit hit_rank="4" peptide="EDPQDAIPK" peptide_prev_aa="L" peptide_next_aa="G" protein="gi|297479727|ref|XP_002690982.1|" num_tot_proteins="2" calc_neutral_pep_mass="1012.4713058478" massdiff="-0.012265327916" num_tol_term="1" num_missed_cleavages="0" num_matched_ions="5" tot_num_ions="17"> | |
| 109 <alternative_protein protein="gi|528966552|ref|XP_005211956.1|"/> | |
| 110 <modification_info> | |
| 111 <mod_aminoacid_mass position="4" mass="129.0425935114"/> | |
| 112 </modification_info> | |
| 113 <search_score name="mvh" value="10.776069653902"/> | |
| 114 <search_score name="mzFidelity" value="21.773698015738"/> | |
| 115 <search_score name="xcorr" value="0.714776080009772"/> | |
| 116 </search_hit> | |
| 117 <search_hit hit_rank="5" peptide="NAAGLAPSRR" peptide_prev_aa="R" peptide_next_aa="N" protein="XXX_gi|27806851|ref|NP_776358.1|" num_tot_proteins="3" calc_neutral_pep_mass="1011.557375519" massdiff="0.082469258884" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="5" tot_num_ions="19"> | |
| 118 <alternative_protein protein="XXX_gi|528993971|ref|XP_005219929.1|"/> | |
| 119 <alternative_protein protein="XXX_gi|528993973|ref|XP_005219930.1|"/> | |
| 120 <search_score name="mvh" value="10.229701455942"/> | |
| 121 <search_score name="mzFidelity" value="22.932400378615"/> | |
| 122 <search_score name="xcorr" value="0.90139108915810939"/> | |
| 123 </search_hit> | |
| 124 <search_hit hit_rank="6" peptide="DQDILNHR" peptide_prev_aa="M" peptide_next_aa="V" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" calc_neutral_pep_mass="1010.4781225602" massdiff="0.011881215684" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="5" tot_num_ions="15"> | |
| 125 <modification_info> | |
| 126 <mod_aminoacid_mass position="6" mass="115.0269434472"/> | |
| 127 </modification_info> | |
| 128 <search_score name="mvh" value="10.003747281739"/> | |
| 129 <search_score name="mzFidelity" value="25.386798535619"/> | |
| 130 <search_score name="xcorr" value="1.2327418458265254"/> | |
| 131 </search_hit> | |
| 132 </search_result> | |
| 133 </spectrum_query> | |
| 134 <spectrum_query spectrum="201208-378803.1.1.4" spectrumNativeID="sample=1 period=1 cycle=1181 experiment=2" start_scan="1" end_scan="1" precursor_neutral_mass="2022.949812520232" assumed_charge="4" index="2" retention_time_sec="614.35099999998"> | |
| 135 <search_result num_target_comparisons="0" num_decoy_comparisons="0"> | |
| 136 <search_hit hit_rank="1" peptide="VRAAALKLGQELCGMLHR" peptide_prev_aa="L" peptide_next_aa="P" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" calc_neutral_pep_mass="2023.0819199626" massdiff="0.132107442368" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="19" tot_num_ions="99"> | |
| 137 <alternative_protein protein="gi|528921180|ref|XP_005195747.1|"/> | |
| 138 <alternative_protein protein="gi|528995523|ref|XP_002695913.2|"/> | |
| 139 <modification_info> | |
| 140 <mod_aminoacid_mass position="13" mass="161.0146644778"/> | |
| 141 </modification_info> | |
| 142 <search_score name="mvh" value="21.467037536913"/> | |
| 143 <search_score name="mzFidelity" value="19.37024464526"/> | |
| 144 <search_score name="xcorr" value="2.2623632236296167"/> | |
| 145 </search_hit> | |
| 146 <search_hit hit_rank="2" peptide="AQDTGLPFTGKERDPPVPP" peptide_prev_aa="R" peptide_next_aa="F" protein="XXX_gi|297488451|ref|XP_002696970.1|" num_tot_proteins="4" calc_neutral_pep_mass="2021.0218046597" massdiff="0.089321970668" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="16" tot_num_ions="102"> | |
| 147 <alternative_protein protein="XXX_gi|358418103|ref|XP_600387.4|"/> | |
| 148 <alternative_protein protein="XXX_gi|528923273|ref|XP_005196452.1|"/> | |
| 149 <alternative_protein protein="XXX_gi|529000951|ref|XP_005222651.1|"/> | |
| 150 <search_score name="mvh" value="21.038913054038"/> | |
| 151 <search_score name="mzFidelity" value="20.708945557204"/> | |
| 152 <search_score name="xcorr" value="1.7484519315798444"/> | |
| 153 </search_hit> | |
| 154 <search_hit hit_rank="3" peptide="VRAAALKLGQELCGMLHR" peptide_prev_aa="L" peptide_next_aa="P" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" calc_neutral_pep_mass="2024.0659359626" massdiff="0.107458526768" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="18" tot_num_ions="99"> | |
| 155 <alternative_protein protein="gi|528921180|ref|XP_005195747.1|"/> | |
| 156 <alternative_protein protein="gi|528995523|ref|XP_002695913.2|"/> | |
| 157 <modification_info> | |
| 158 <mod_aminoacid_mass position="10" mass="129.0425935114"/> | |
| 159 <mod_aminoacid_mass position="13" mass="161.0146644778"/> | |
| 160 </modification_info> | |
| 161 <search_score name="mvh" value="19.477768930341"/> | |
| 162 <search_score name="mzFidelity" value="19.862979428176"/> | |
| 163 <search_score name="xcorr" value="2.5029671826385758"/> | |
| 164 </search_hit> | |
| 165 <search_hit hit_rank="4" peptide="AAALKLGQELCGMLHRPR" peptide_prev_aa="R" peptide_next_aa="H" protein="gi|528995523|ref|XP_002695913.2|" num_tot_proteins="1" calc_neutral_pep_mass="2021.0662698984" massdiff="0.133787209368" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="15" tot_num_ions="96"> | |
| 166 <modification_info> | |
| 167 <mod_aminoacid_mass position="11" mass="161.0146644778"/> | |
| 168 </modification_info> | |
| 169 <search_score name="mvh" value="15.095047502377"/> | |
| 170 <search_score name="mzFidelity" value="16.115018508678"/> | |
| 171 <search_score name="xcorr" value="1.9267737457763163"/> | |
| 172 </search_hit> | |
| 173 <search_hit hit_rank="5" peptide="PRHLMGCLEQGLKLAAAR" peptide_prev_aa="R" peptide_next_aa="V" protein="XXX_gi|528995523|ref|XP_002695913.2|" num_tot_proteins="1" calc_neutral_pep_mass="2021.0662698984" massdiff="0.133787209368" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="13" tot_num_ions="99"> | |
| 174 <modification_info> | |
| 175 <mod_aminoacid_mass position="7" mass="161.0146644778"/> | |
| 176 </modification_info> | |
| 177 <search_score name="mvh" value="12.532513600259"/> | |
| 178 <search_score name="mzFidelity" value="12.691293478724"/> | |
| 179 <search_score name="xcorr" value="1.32307615270207"/> | |
| 180 </search_hit> | |
| 181 </search_result> | |
| 182 </spectrum_query> | |
| 183 <spectrum_query spectrum="201208-378803.1.1.5" spectrumNativeID="sample=1 period=1 cycle=1181 experiment=2" start_scan="1" end_scan="1" precursor_neutral_mass="2526.66993581909" assumed_charge="5" index="3" retention_time_sec="614.35099999998"> | |
| 184 <search_result num_target_comparisons="0" num_decoy_comparisons="0"> | |
| 185 <search_hit hit_rank="1" peptide="LELLLQIANKIQNGALNCEEKL" peptide_prev_aa="R" peptide_next_aa="T" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="2526.3251069949" massdiff="-0.34482882419" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="25" tot_num_ions="154"> | |
| 186 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/> | |
| 187 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/> | |
| 188 <modification_info> | |
| 189 <mod_aminoacid_mass position="12" mass="129.0425935114"/> | |
| 190 <mod_aminoacid_mass position="17" mass="115.0269434472"/> | |
| 191 <mod_aminoacid_mass position="18" mass="161.0146644778"/> | |
| 192 </modification_info> | |
| 193 <search_score name="mvh" value="24.555168021719"/> | |
| 194 <search_score name="mzFidelity" value="13.158130753361"/> | |
| 195 <search_score name="xcorr" value="2.6769549653109732"/> | |
| 196 </search_hit> | |
| 197 <search_hit hit_rank="1" peptide="LELLLQIANKIQNGALNCEEKL" peptide_prev_aa="R" peptide_next_aa="T" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="2526.3251069949" massdiff="-0.34482882419" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="25" tot_num_ions="154"> | |
| 198 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/> | |
| 199 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/> | |
| 200 <modification_info> | |
| 201 <mod_aminoacid_mass position="13" mass="115.0269434472"/> | |
| 202 <mod_aminoacid_mass position="17" mass="115.0269434472"/> | |
| 203 <mod_aminoacid_mass position="18" mass="161.0146644778"/> | |
| 204 </modification_info> | |
| 205 <search_score name="mvh" value="24.555168021719"/> | |
| 206 <search_score name="mzFidelity" value="13.158130753361"/> | |
| 207 <search_score name="xcorr" value="2.6858516440138747"/> | |
| 208 </search_hit> | |
| 209 <search_hit hit_rank="2" peptide="QERLALEATIKDNESEEGNGGIR" peptide_prev_aa="E" peptide_next_aa="G" protein="gi|297479727|ref|XP_002690982.1|" num_tot_proteins="4" calc_neutral_pep_mass="2530.214704231" massdiff="0.518773665111" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="25" tot_num_ions="162"> | |
| 210 <alternative_protein protein="gi|358414198|ref|XP_002700672.2|"/> | |
| 211 <alternative_protein protein="gi|528966552|ref|XP_005211956.1|"/> | |
| 212 <alternative_protein protein="gi|528966554|ref|XP_005211957.1|"/> | |
| 213 <modification_info> | |
| 214 <mod_aminoacid_mass position="13" mass="115.0269434472"/> | |
| 215 <mod_aminoacid_mass position="19" mass="115.0269434472"/> | |
| 216 </modification_info> | |
| 217 <search_score name="mvh" value="22.75395632061"/> | |
| 218 <search_score name="mzFidelity" value="24.10812825654"/> | |
| 219 <search_score name="xcorr" value="3.2616588403384505"/> | |
| 220 </search_hit> | |
| 221 <search_hit hit_rank="3" peptide="LELLLQIANKIQNGALNCEEKL" peptide_prev_aa="R" peptide_next_aa="T" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="2526.3251069949" massdiff="-0.34482882419" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="24" tot_num_ions="154"> | |
| 222 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/> | |
| 223 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/> | |
| 224 <modification_info> | |
| 225 <mod_aminoacid_mass position="12" mass="129.0425935114"/> | |
| 226 <mod_aminoacid_mass position="13" mass="115.0269434472"/> | |
| 227 <mod_aminoacid_mass position="18" mass="161.0146644778"/> | |
| 228 </modification_info> | |
| 229 <search_score name="mvh" value="22.352043722256"/> | |
| 230 <search_score name="mzFidelity" value="10.775997964917"/> | |
| 231 <search_score name="xcorr" value="2.5918696638942031"/> | |
| 232 </search_hit> | |
| 233 <search_hit hit_rank="4" peptide="GVTVAQHVDAAHSEIEEELAKHR" peptide_prev_aa="Q" peptide_next_aa="I" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="1" calc_neutral_pep_mass="2526.2462787157" massdiff="-0.42365710339" num_tol_term="1" num_missed_cleavages="1" num_matched_ions="22" tot_num_ions="159"> | |
| 234 <modification_info> | |
| 235 <mod_aminoacid_mass position="6" mass="129.0425935114"/> | |
| 236 </modification_info> | |
| 237 <search_score name="mvh" value="19.580449224809"/> | |
| 238 <search_score name="mzFidelity" value="13.402506848624"/> | |
| 239 <search_score name="xcorr" value="2.9697220446115864"/> | |
| 240 </search_hit> | |
| 241 <search_hit hit_rank="5" peptide="QMLDLLDIKEATNPDILNKSSR" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" calc_neutral_pep_mass="2530.2948537701" massdiff="0.59892320421" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="16" tot_num_ions="155"> | |
| 242 <modification_info> | |
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| 1795 <search_score name="mzFidelity" value="43.233837026504"/> | |
| 1796 <search_score name="xcorr" value="1.3184769992000609"/> | |
| 1797 </search_hit> | |
| 1798 <search_hit hit_rank="3" peptide="LAEDILNSMFE" peptide_prev_aa="K" peptide_next_aa="A" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" calc_neutral_pep_mass="1297.5747700192" massdiff="0.025491764274" num_tol_term="1" num_missed_cleavages="0" num_matched_ions="15" tot_num_ions="41"> | |
| 1799 <alternative_protein protein="gi|528921180|ref|XP_005195747.1|"/> | |
| 1800 <alternative_protein protein="gi|528995523|ref|XP_002695913.2|"/> | |
| 1801 <modification_info> | |
| 1802 <mod_aminoacid_mass position="7" mass="115.0269434472"/> | |
| 1803 <mod_aminoacid_mass position="9" mass="147.0353846062"/> | |
| 1804 </modification_info> | |
| 1805 <search_score name="mvh" value="17.079737265744"/> | |
| 1806 <search_score name="mzFidelity" value="41.759603358649"/> | |
| 1807 <search_score name="xcorr" value="1.382224299342486"/> | |
| 1808 </search_hit> | |
| 1809 <search_hit hit_rank="4" peptide="MHQIYVQCAK" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528995523|ref|XP_002695913.2|" num_tot_proteins="1" calc_neutral_pep_mass="1294.5685798959" massdiff="0.045296387774" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="12" tot_num_ions="38"> | |
| 1810 <modification_info> | |
| 1811 <mod_aminoacid_mass position="1" mass="147.0353846062"/> | |
| 1812 <mod_aminoacid_mass position="7" mass="129.0425935114"/> | |
| 1813 <mod_aminoacid_mass position="8" mass="161.0146644778"/> | |
| 1814 </modification_info> | |
| 1815 <search_score name="mvh" value="11.825148439568"/> | |
| 1816 <search_score name="mzFidelity" value="34.933627535576"/> | |
| 1817 <search_score name="xcorr" value="0.88563947453224823"/> | |
| 1818 </search_hit> | |
| 1819 <search_hit hit_rank="5" peptide="ALYNQYIHFK" peptide_prev_aa="K" peptide_next_aa="E" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="1" calc_neutral_pep_mass="1296.6502732664" massdiff="0.109659927074" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="12" tot_num_ions="37"> | |
| 1820 <modification_info> | |
| 1821 <mod_aminoacid_mass position="5" mass="129.0425935114"/> | |
| 1822 </modification_info> | |
| 1823 <search_score name="mvh" value="11.286442826034"/> | |
| 1824 <search_score name="mzFidelity" value="33.218635113127"/> | |
| 1825 <search_score name="xcorr" value="1.3257260176603933"/> | |
| 1826 </search_hit> | |
| 1827 </search_result> | |
| 1828 </spectrum_query> | |
| 1829 <spectrum_query spectrum="201208-378803.11.11.4" spectrumNativeID="sample=1 period=1 cycle=1192 experiment=3" start_scan="11" end_scan="11" precursor_neutral_mass="1729.729482701368" assumed_charge="4" index="37" retention_time_sec="641.23099999998"> | |
| 1830 <search_result num_target_comparisons="4849" num_decoy_comparisons="4954"> | |
| 1831 <search_hit hit_rank="1" peptide="QFFSDARDLESFLR" peptide_prev_aa="F" peptide_next_aa="N" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="1729.8423837311" massdiff="0.112901029732" num_tol_term="1" num_missed_cleavages="1" num_matched_ions="25" tot_num_ions="79"> | |
| 1832 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/> | |
| 1833 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/> | |
| 1834 <search_score name="mvh" value="20.66312363701"/> | |
| 1835 <search_score name="mzFidelity" value="41.027825807019"/> | |
| 1836 <search_score name="xcorr" value="2.5768184786899013"/> | |
| 1837 </search_hit> | |
| 1838 <search_hit hit_rank="2" peptide="LKQTTGEEVLLIQEK" peptide_prev_aa="L" peptide_next_aa="L" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="1728.9509315427" massdiff="0.230113756932" num_tol_term="1" num_missed_cleavages="1" num_matched_ions="22" tot_num_ions="84"> | |
| 1839 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/> | |
| 1840 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/> | |
| 1841 <modification_info> | |
| 1842 <mod_aminoacid_mass position="3" mass="129.0425935114"/> | |
| 1843 </modification_info> | |
| 1844 <search_score name="mvh" value="20.04079700368"/> | |
| 1845 <search_score name="mzFidelity" value="29.382354424296"/> | |
| 1846 <search_score name="xcorr" value="0.40784068333172124"/> | |
| 1847 </search_hit> | |
| 1848 <search_hit hit_rank="3" peptide="KFPFSEFVPKVYNQ" peptide_prev_aa="K" peptide_next_aa="I" protein="gi|115497338|ref|NP_001069884.1|" num_tot_proteins="4" calc_neutral_pep_mass="1729.8715590097" massdiff="0.142076308332" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="24" tot_num_ions="79"> | |
| 1849 <alternative_protein protein="gi|528968104|ref|XP_005212567.1|"/> | |
| 1850 <alternative_protein protein="gi|528968106|ref|XP_005212568.1|"/> | |
| 1851 <alternative_protein protein="gi|528968108|ref|XP_005212569.1|"/> | |
| 1852 <modification_info> | |
| 1853 <mod_aminoacid_mass position="13" mass="115.0269434472"/> | |
| 1854 </modification_info> | |
| 1855 <search_score name="mvh" value="19.789496581833"/> | |
| 1856 <search_score name="mzFidelity" value="42.946593114427"/> | |
| 1857 <search_score name="xcorr" value="1.0162344821277676"/> | |
| 1858 </search_hit> | |
| 1859 <search_hit hit_rank="4" peptide="VAEPQTSIASQGSLRQG" peptide_prev_aa="K" peptide_next_aa="V" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="1" calc_neutral_pep_mass="1729.8482578004" massdiff="0.118775099032" num_tol_term="1" num_missed_cleavages="1" num_matched_ions="24" tot_num_ions="94"> | |
| 1860 <modification_info> | |
| 1861 <mod_aminoacid_mass position="5" mass="129.0425935114"/> | |
| 1862 <mod_aminoacid_mass position="11" mass="129.0425935114"/> | |
| 1863 </modification_info> | |
| 1864 <search_score name="mvh" value="17.901964616375"/> | |
| 1865 <search_score name="mzFidelity" value="34.62687168723"/> | |
| 1866 <search_score name="xcorr" value="1.3574216866319111"/> | |
| 1867 </search_hit> | |
| 1868 <search_hit hit_rank="5" peptide="HQREVSKGCVTDWK" peptide_prev_aa="K" peptide_next_aa="D" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="1" calc_neutral_pep_mass="1729.8206031231" massdiff="0.091120421732" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="22" tot_num_ions="79"> | |
| 1869 <modification_info> | |
| 1870 <mod_aminoacid_mass position="9" mass="161.0146644778"/> | |
| 1871 </modification_info> | |
| 1872 <search_score name="mvh" value="16.185628945236"/> | |
| 1873 <search_score name="mzFidelity" value="30.568576378864"/> | |
| 1874 <search_score name="xcorr" value="1.5530534568748904"/> | |
| 1875 </search_hit> | |
| 1876 <search_hit hit_rank="6" peptide="HQRTHSGEKPFSCR" peptide_prev_aa="K" peptide_next_aa="E" protein="gi|528908804|ref|XP_005199341.1|" num_tot_proteins="2" calc_neutral_pep_mass="1726.7957853561" massdiff="0.092297401532" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="21" tot_num_ions="79"> | |
| 1877 <alternative_protein protein="gi|528959651|ref|XP_005210513.1|"/> | |
| 1878 <modification_info> | |
| 1879 <mod_aminoacid_mass position="13" mass="161.0146644778"/> | |
| 1880 </modification_info> | |
| 1881 <search_score name="mvh" value="15.212814715843"/> | |
| 1882 <search_score name="mzFidelity" value="29.010179087649"/> | |
| 1883 <search_score name="xcorr" value="1.1578121428651167"/> | |
| 1884 </search_hit> | |
| 1885 </search_result> | |
| 1886 </spectrum_query> | |
| 1887 <spectrum_query spectrum="201208-378803.11.11.5" spectrumNativeID="sample=1 period=1 cycle=1192 experiment=3" start_scan="11" end_scan="11" precursor_neutral_mass="2160.90102223221" assumed_charge="5" index="38" retention_time_sec="641.23099999998"> | |
| 1888 <search_result num_target_comparisons="4849" num_decoy_comparisons="4954"> | |
| 1889 <search_hit hit_rank="1" peptide="TVILAQAGCTLALALLLCKM" peptide_prev_aa="Q" peptide_next_aa="-" protein="XXX_gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" calc_neutral_pep_mass="2161.1560563792" massdiff="0.25503414699" num_tol_term="1" num_missed_cleavages="1" num_matched_ions="45" tot_num_ions="144"> | |
| 1890 <alternative_protein protein="XXX_gi|87196497|ref|NP_776354.2|"/> | |
| 1891 <modification_info> | |
| 1892 <mod_aminoacid_mass position="9" mass="161.0146644778"/> | |
| 1893 <mod_aminoacid_mass position="18" mass="161.0146644778"/> | |
| 1894 </modification_info> | |
| 1895 <search_score name="mvh" value="33.125592775359"/> | |
| 1896 <search_score name="mzFidelity" value="39.351730980617"/> | |
| 1897 <search_score name="xcorr" value="2.6040912299984704"/> | |
| 1898 </search_hit> | |
| 1899 <search_hit hit_rank="2" peptide="TVILAQAGCTLALALLLCKM" peptide_prev_aa="Q" peptide_next_aa="-" protein="XXX_gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" calc_neutral_pep_mass="2162.1400723792" massdiff="0.23038523139" num_tol_term="1" num_missed_cleavages="1" num_matched_ions="43" tot_num_ions="144"> | |
| 1900 <alternative_protein protein="XXX_gi|87196497|ref|NP_776354.2|"/> | |
| 1901 <modification_info> | |
| 1902 <mod_aminoacid_mass position="6" mass="129.0425935114"/> | |
| 1903 <mod_aminoacid_mass position="9" mass="161.0146644778"/> | |
| 1904 <mod_aminoacid_mass position="18" mass="161.0146644778"/> | |
| 1905 </modification_info> | |
| 1906 <search_score name="mvh" value="29.781154070036"/> | |
| 1907 <search_score name="mzFidelity" value="35.827021773039"/> | |
| 1908 <search_score name="xcorr" value="2.5685771738653771"/> | |
| 1909 </search_hit> | |
| 1910 <search_hit hit_rank="3" peptide="ALEASQAIRGGEAQLMDVTAK" peptide_prev_aa="D" peptide_next_aa="R" protein="XXX_gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="2159.0892327131" massdiff="0.205540312089" num_tol_term="1" num_missed_cleavages="1" num_matched_ions="42" tot_num_ions="149"> | |
| 1911 <alternative_protein protein="XXX_gi|528944676|ref|XP_005204734.1|"/> | |
| 1912 <alternative_protein protein="XXX_gi|528944678|ref|XP_005204735.1|"/> | |
| 1913 <modification_info> | |
| 1914 <mod_aminoacid_mass position="14" mass="129.0425935114"/> | |
| 1915 </modification_info> | |
| 1916 <search_score name="mvh" value="29.2612156983"/> | |
| 1917 <search_score name="mzFidelity" value="39.02918497916"/> | |
| 1918 <search_score name="xcorr" value="1.8035651295733732"/> | |
| 1919 </search_hit> | |
| 1920 <search_hit hit_rank="4" peptide="GQDHKVDFILQREPYCR" peptide_prev_aa="W" peptide_next_aa="D" protein="gi|156523214|ref|NP_001096021.1|" num_tot_proteins="1" calc_neutral_pep_mass="2162.0214881905" massdiff="0.11180104269" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="33" tot_num_ions="118"> | |
| 1921 <modification_info> | |
| 1922 <mod_aminoacid_mass position="2" mass="129.0425935114"/> | |
| 1923 <mod_aminoacid_mass position="16" mass="161.0146644778"/> | |
| 1924 </modification_info> | |
| 1925 <search_score name="mvh" value="23.139123433843"/> | |
| 1926 <search_score name="mzFidelity" value="39.894890854424"/> | |
| 1927 <search_score name="xcorr" value="1.7809115181964124"/> | |
| 1928 </search_hit> | |
| 1929 <search_hit hit_rank="5" peptide="LGEDNINVVEGNEQFISASK" peptide_prev_aa="R" peptide_next_aa="S" protein="gi|528947854|ref|XP_002687054.3|" num_tot_proteins="1" calc_neutral_pep_mass="2162.0491416222" massdiff="0.13945447439" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="31" tot_num_ions="141"> | |
| 1930 <search_score name="mvh" value="16.47729630086"/> | |
| 1931 <search_score name="mzFidelity" value="22.644348640351"/> | |
| 1932 <search_score name="xcorr" value="1.2955222464668414"/> | |
| 1933 </search_hit> | |
| 1934 <search_hit hit_rank="6" peptide="EHEAATELSEAEAMKVREM" peptide_prev_aa="R" peptide_next_aa="-" protein="XXX_gi|528968108|ref|XP_005212569.1|" num_tot_proteins="1" calc_neutral_pep_mass="2159.9827183159" massdiff="0.09036099929" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="30" tot_num_ions="139"> | |
| 1935 <search_score name="mvh" value="14.055300347979"/> | |
| 1936 <search_score name="mzFidelity" value="30.701673593397"/> | |
| 1937 <search_score name="xcorr" value="2.1467374554817193"/> | |
| 1938 </search_hit> | |
| 1939 </search_result> | |
| 1940 </spectrum_query> | |
| 1941 <spectrum_query spectrum="201208-378803.12.12.2" spectrumNativeID="sample=1 period=1 cycle=1193 experiment=2" start_scan="12" end_scan="12" precursor_neutral_mass="915.392372425296" assumed_charge="2" index="39" retention_time_sec="643.866"> | |
| 1942 <search_result num_target_comparisons="4375" num_decoy_comparisons="3753"> | |
| 1943 <search_hit hit_rank="1" peptide="IDALNENK" peptide_prev_aa="K" peptide_next_aa="V" protein="gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" calc_neutral_pep_mass="915.4661604752" massdiff="0.073788049904" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="11" tot_num_ions="15"> | |
| 1944 <alternative_protein protein="gi|87196497|ref|NP_776354.2|"/> | |
| 1945 <search_score name="mvh" value="30.550733310771"/> | |
| 1946 <search_score name="mzFidelity" value="58.405187582457"/> | |
| 1947 <search_score name="xcorr" value="2.4908993934988977"/> | |
| 1948 </search_hit> | |
| 1949 <search_hit hit_rank="2" peptide="IDALNENK" peptide_prev_aa="K" peptide_next_aa="V" protein="gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" calc_neutral_pep_mass="916.4501764752" massdiff="0.049139134304" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="11" tot_num_ions="15"> | |
| 1950 <alternative_protein protein="gi|87196497|ref|NP_776354.2|"/> | |
| 1951 <modification_info> | |
| 1952 <mod_aminoacid_mass position="5" mass="115.0269434472"/> | |
| 1953 </modification_info> | |
| 1954 <search_score name="mvh" value="28.855387571211"/> | |
| 1955 <search_score name="mzFidelity" value="62.499532144679"/> | |
| 1956 <search_score name="xcorr" value="2.31661231187582"/> | |
| 1957 </search_hit> | |
| 1958 <search_hit hit_rank="3" peptide="IDALNENK" peptide_prev_aa="K" peptide_next_aa="V" protein="gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" calc_neutral_pep_mass="916.4501764752" massdiff="0.049139134304" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="11" tot_num_ions="15"> | |
| 1959 <alternative_protein protein="gi|87196497|ref|NP_776354.2|"/> | |
| 1960 <modification_info> | |
| 1961 <mod_aminoacid_mass position="7" mass="115.0269434472"/> | |
| 1962 </modification_info> | |
| 1963 <search_score name="mvh" value="25.673629409299"/> | |
| 1964 <search_score name="mzFidelity" value="60.196947051685"/> | |
| 1965 <search_score name="xcorr" value="2.2012118913054466"/> | |
| 1966 </search_hit> | |
| 1967 <search_hit hit_rank="4" peptide="NEGIQEVQ" peptide_prev_aa="K" peptide_next_aa="F" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="1" calc_neutral_pep_mass="916.4137909689" massdiff="0.012753628004" num_tol_term="1" num_missed_cleavages="0" num_matched_ions="10" tot_num_ions="15"> | |
| 1968 <modification_info> | |
| 1969 <mod_aminoacid_mass position="8" mass="129.0425935114"/> | |
| 1970 </modification_info> | |
| 1971 <search_score name="mvh" value="21.4213318813"/> | |
| 1972 <search_score name="mzFidelity" value="55.200185329855"/> | |
| 1973 <search_score name="xcorr" value="1.6374151481986046"/> | |
| 1974 </search_hit> | |
| 1975 <search_hit hit_rank="5" peptide="VEQIGENK" peptide_prev_aa="Q" peptide_next_aa="Y" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="1" calc_neutral_pep_mass="916.4501764752" massdiff="0.049139134304" num_tol_term="1" num_missed_cleavages="0" num_matched_ions="9" tot_num_ions="15"> | |
| 1976 <modification_info> | |
| 1977 <mod_aminoacid_mass position="7" mass="115.0269434472"/> | |
| 1978 </modification_info> | |
| 1979 <search_score name="mvh" value="17.223287956808"/> | |
| 1980 <search_score name="mzFidelity" value="42.776874535627"/> | |
| 1981 <search_score name="xcorr" value="1.1658588475108147"/> | |
| 1982 </search_hit> | |
| 1983 <search_hit hit_rank="6" peptide="QDSTLQIK" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528908806|ref|XP_005199342.1|" num_tot_proteins="2" calc_neutral_pep_mass="914.4714606036" massdiff="0.087753093904" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="8" tot_num_ions="15"> | |
| 1984 <alternative_protein protein="XXX_gi|528959657|ref|XP_002689899.2|"/> | |
| 1985 <modification_info> | |
| 1986 <mod_aminoacid_mass position="1" mass="111.0325775114"/> | |
| 1987 </modification_info> | |
| 1988 <search_score name="mvh" value="14.160099674158"/> | |
| 1989 <search_score name="mzFidelity" value="38.116585050418"/> | |
| 1990 <search_score name="xcorr" value="0.95390982844829564"/> | |
| 1991 </search_hit> | |
| 1992 </search_result> | |
| 1993 </spectrum_query> | |
| 1994 <spectrum_query spectrum="201208-378803.12.12.4" spectrumNativeID="sample=1 period=1 cycle=1193 experiment=2" start_scan="12" end_scan="12" precursor_neutral_mass="1830.784744850592" assumed_charge="4" index="40" retention_time_sec="643.866"> | |
| 1995 <search_result num_target_comparisons="4375" num_decoy_comparisons="3753"> | |
| 1996 <search_hit hit_rank="1" peptide="QMEAESISSSEQKHIQ" peptide_prev_aa="K" peptide_next_aa="K" protein="gi|528953238|ref|XP_005208082.1|" num_tot_proteins="1" calc_neutral_pep_mass="1830.8417913836" massdiff="0.057046533008" num_tol_term="1" num_missed_cleavages="1" num_matched_ions="27" tot_num_ions="90"> | |
| 1997 <search_score name="mvh" value="23.876197725465"/> | |
| 1998 <search_score name="mzFidelity" value="40.86836403579"/> | |
| 1999 <search_score name="xcorr" value="1.280892409837598"/> | |
| 2000 </search_hit> | |
| 2001 <search_hit hit_rank="2" peptide="QMEAESISSSEQKHIQ" peptide_prev_aa="K" peptide_next_aa="K" protein="gi|528953238|ref|XP_005208082.1|" num_tot_proteins="1" calc_neutral_pep_mass="1831.8258073836" massdiff="0.032397617408" num_tol_term="1" num_missed_cleavages="1" num_matched_ions="27" tot_num_ions="90"> | |
| 2002 <modification_info> | |
| 2003 <mod_aminoacid_mass position="12" mass="129.0425935114"/> | |
| 2004 </modification_info> | |
| 2005 <search_score name="mvh" value="23.744230054817"/> | |
| 2006 <search_score name="mzFidelity" value="38.41698007804"/> | |
| 2007 <search_score name="xcorr" value="1.0703007025247882"/> | |
| 2008 </search_hit> | |
| 2009 <search_hit hit_rank="3" peptide="QMEAESISSSEQKHIQ" peptide_prev_aa="K" peptide_next_aa="K" protein="gi|528953238|ref|XP_005208082.1|" num_tot_proteins="1" calc_neutral_pep_mass="1831.8258073836" massdiff="0.032397617408" num_tol_term="1" num_missed_cleavages="1" num_matched_ions="26" tot_num_ions="90"> | |
| 2010 <modification_info> | |
| 2011 <mod_aminoacid_mass position="16" mass="129.0425935114"/> | |
| 2012 </modification_info> | |
| 2013 <search_score name="mvh" value="22.079409996531"/> | |
| 2014 <search_score name="mzFidelity" value="37.322435196217"/> | |
| 2015 <search_score name="xcorr" value="1.1118699625873436"/> | |
| 2016 </search_hit> | |
| 2017 <search_hit hit_rank="4" peptide="EEAEAAAEKGEKDEAGAK" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" calc_neutral_pep_mass="1831.8435655226" massdiff="0.050155756408" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="25" tot_num_ions="102"> | |
| 2018 <alternative_protein protein="XXX_gi|528921180|ref|XP_005195747.1|"/> | |
| 2019 <alternative_protein protein="XXX_gi|528995523|ref|XP_002695913.2|"/> | |
| 2020 <search_score name="mvh" value="21.51850454061"/> | |
| 2021 <search_score name="mzFidelity" value="39.97868581291"/> | |
| 2022 <search_score name="xcorr" value="1.8747835384210012"/> | |
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| 2917 <alternative_protein protein="gi|528995523|ref|XP_002695913.2|"/> | |
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| 2968 <modification_info> | |
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| 3014 <modification_info> | |
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| 3022 <modification_info> | |
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| 3077 <modification_info> | |
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| 3087 <modification_info> | |
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| 3097 <search_score name="mvh" value="9.747134710307"/> | |
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| 3102 <search_score name="mvh" value="8.624696326442"/> | |
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| 3111 <modification_info> | |
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| 19571 <alternative_protein protein="gi|528968108|ref|XP_005212569.1|"/> | |
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| 19582 <modification_info> | |
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| 19685 <modification_info> | |
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| 19689 <search_score name="mvh" value="5.577217808333"/> | |
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| 19710 <alternative_protein protein="XXX_gi|528993971|ref|XP_005219929.1|"/> | |
| 19711 <alternative_protein protein="XXX_gi|528993973|ref|XP_005219930.1|"/> | |
| 19712 <alternative_protein protein="XXX_gi|528993975|ref|XP_005219931.1|"/> | |
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| 19718 <search_score name="mzFidelity" value="19.981039427908"/> | |
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| 19721 <search_hit hit_rank="2" peptide="NNFPLYALGHDWAEQNVAMLG" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|27806851|ref|NP_776358.1|" num_tot_proteins="4" calc_neutral_pep_mass="2361.0735830641" massdiff="-0.199519867548" num_tol_term="1" num_missed_cleavages="0" num_matched_ions="21" tot_num_ions="108"> | |
| 19722 <alternative_protein protein="XXX_gi|528993971|ref|XP_005219929.1|"/> | |
| 19723 <alternative_protein protein="XXX_gi|528993973|ref|XP_005219930.1|"/> | |
| 19724 <alternative_protein protein="XXX_gi|528993975|ref|XP_005219931.1|"/> | |
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| 19726 <mod_aminoacid_mass position="1" mass="115.0269434472"/> | |
| 19727 <mod_aminoacid_mass position="16" mass="115.0269434472"/> | |
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| 19729 <search_score name="mvh" value="19.10796392667"/> | |
| 19730 <search_score name="mzFidelity" value="17.863884165666"/> | |
| 19731 <search_score name="xcorr" value="1.1789460250463633"/> | |
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| 19733 <search_hit hit_rank="2" peptide="NNFPLYALGHDWAEQNVAMLG" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|27806851|ref|NP_776358.1|" num_tot_proteins="4" calc_neutral_pep_mass="2361.0735830641" massdiff="-0.199519867548" num_tol_term="1" num_missed_cleavages="0" num_matched_ions="21" tot_num_ions="108"> | |
| 19734 <alternative_protein protein="XXX_gi|528993971|ref|XP_005219929.1|"/> | |
| 19735 <alternative_protein protein="XXX_gi|528993973|ref|XP_005219930.1|"/> | |
| 19736 <alternative_protein protein="XXX_gi|528993975|ref|XP_005219931.1|"/> | |
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| 19738 <mod_aminoacid_mass position="1" mass="115.0269434472"/> | |
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| 19741 <search_score name="mvh" value="19.10796392667"/> | |
| 19742 <search_score name="mzFidelity" value="17.863884165666"/> | |
| 19743 <search_score name="xcorr" value="1.2015391119069554"/> | |
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| 19745 <search_hit hit_rank="3" peptide="IFAMAIVFTLFYGRLPENNK" peptide_prev_aa="L" peptide_next_aa="G" protein="XXX_gi|297479727|ref|XP_002690982.1|" num_tot_proteins="4" calc_neutral_pep_mass="2360.2238610789" massdiff="-0.040576937148" num_tol_term="1" num_missed_cleavages="1" num_matched_ions="25" tot_num_ions="104"> | |
| 19746 <alternative_protein protein="XXX_gi|358414198|ref|XP_002700672.2|"/> | |
| 19747 <alternative_protein protein="XXX_gi|528966552|ref|XP_005211956.1|"/> | |
| 19748 <alternative_protein protein="XXX_gi|528966554|ref|XP_005211957.1|"/> | |
| 19749 <modification_info> | |
| 19750 <mod_aminoacid_mass position="4" mass="147.0353846062"/> | |
| 19751 <mod_aminoacid_mass position="18" mass="115.0269434472"/> | |
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| 19753 <search_score name="mvh" value="19.103495897785"/> | |
| 19754 <search_score name="mzFidelity" value="26.001318189042"/> | |
| 19755 <search_score name="xcorr" value="1.2906772505172093"/> | |
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| 19757 <search_hit hit_rank="4" peptide="QSAELADREKITGQLESLESR" peptide_prev_aa="A" peptide_next_aa="W" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="1" calc_neutral_pep_mass="2361.1659631244" massdiff="-0.107139807248" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="23" tot_num_ions="111"> | |
| 19758 <modification_info> | |
| 19759 <mod_aminoacid_mass position="1" mass="129.0425935114"/> | |
| 19760 <mod_aminoacid_mass position="14" mass="129.0425935114"/> | |
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| 19762 <search_score name="mvh" value="18.13945078176"/> | |
| 19763 <search_score name="mzFidelity" value="19.915436529506"/> | |
| 19764 <search_score name="xcorr" value="2.4773009901021639"/> | |
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| 19766 <search_hit hit_rank="5" peptide="MFAGNGIHDWWMKIAALTER" peptide_prev_aa="-" peptide_next_aa="R" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="1" calc_neutral_pep_mass="2362.1350624314" massdiff="-0.146705415848" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="17" tot_num_ions="105"> | |
| 19767 <modification_info> | |
| 19768 <mod_aminoacid_mass position="12" mass="147.0353846062"/> | |
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| 19770 <search_score name="mvh" value="11.767399115599"/> | |
| 19771 <search_score name="mzFidelity" value="20.531805617291"/> | |
| 19772 <search_score name="xcorr" value="1.1864361975205768"/> | |
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| 19774 <search_hit hit_rank="6" peptide="ELKMQMEEVWSLLEYVFR" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="1" calc_neutral_pep_mass="2361.1384614322" massdiff="-0.134641499448" num_tol_term="2" num_missed_cleavages="1" num_matched_ions="15" tot_num_ions="95"> | |
| 19775 <modification_info> | |
| 19776 <mod_aminoacid_mass position="4" mass="147.0353846062"/> | |
| 19777 <mod_aminoacid_mass position="6" mass="147.0353846062"/> | |
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| 19779 <search_score name="mvh" value="10.285465019609"/> | |
| 19780 <search_score name="mzFidelity" value="13.80735614367"/> | |
| 19781 <search_score name="xcorr" value="1.1984396555433436"/> | |
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| 19784 </spectrum_query> | |
| 19785 <spectrum_query spectrum="201208-378803.103.103.5" spectrumNativeID="sample=1 period=1 cycle=1283 experiment=2" start_scan="103" end_scan="103" precursor_neutral_mass="2952.60004358016" assumed_charge="5" index="392" retention_time_sec="883.49500000002"> | |
| 19786 <search_result num_target_comparisons="5004" num_decoy_comparisons="5853"> | |
| 19787 <search_hit hit_rank="1" peptide="VVMFGGVDHRYYKGELNWIPVSQTR" peptide_prev_aa="S" peptide_next_aa="Y" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" calc_neutral_pep_mass="2952.4592487943" massdiff="-0.14079478586" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="33" tot_num_ions="170"> | |
| 19788 <modification_info> | |
| 19789 <mod_aminoacid_mass position="17" mass="115.0269434472"/> | |
| 19790 <mod_aminoacid_mass position="23" mass="129.0425935114"/> | |
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| 19792 <search_score name="mvh" value="22.429499753974"/> | |
| 19793 <search_score name="mzFidelity" value="13.487824830084"/> | |
| 19794 <search_score name="xcorr" value="1.7179008825312954"/> | |
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| 19796 <search_hit hit_rank="2" peptide="HQELLSQQQNFILATQSAQAFLDQHG" peptide_prev_aa="R" peptide_next_aa="H" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="2952.4365986816" massdiff="-0.163444898561" num_tol_term="1" num_missed_cleavages="0" num_matched_ions="35" tot_num_ions="178"> | |
| 19797 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/> | |
| 19798 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/> | |
| 19799 <modification_info> | |
| 19800 <mod_aminoacid_mass position="2" mass="129.0425935114"/> | |
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| 19802 <search_score name="mvh" value="19.859454219408"/> | |
| 19803 <search_score name="mzFidelity" value="15.180123811766"/> | |
| 19804 <search_score name="xcorr" value="2.4333670980415167"/> | |
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| 19806 <search_hit hit_rank="2" peptide="HQELLSQQQNFILATQSAQAFLDQHG" peptide_prev_aa="R" peptide_next_aa="H" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="2952.4365986816" massdiff="-0.163444898561" num_tol_term="1" num_missed_cleavages="0" num_matched_ions="35" tot_num_ions="178"> | |
| 19807 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/> | |
| 19808 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/> | |
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| 19810 <mod_aminoacid_mass position="9" mass="129.0425935114"/> | |
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| 19812 <search_score name="mvh" value="19.859454219408"/> | |
| 19813 <search_score name="mzFidelity" value="17.067193460799"/> | |
| 19814 <search_score name="xcorr" value="2.3662811372370296"/> | |
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| 19816 <search_hit hit_rank="2" peptide="HQELLSQQQNFILATQSAQAFLDQHG" peptide_prev_aa="R" peptide_next_aa="H" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="2952.4365986816" massdiff="-0.163444898561" num_tol_term="1" num_missed_cleavages="0" num_matched_ions="35" tot_num_ions="178"> | |
| 19817 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/> | |
| 19818 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/> | |
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| 19820 <mod_aminoacid_mass position="10" mass="115.0269434472"/> | |
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| 19822 <search_score name="mvh" value="19.859454219408"/> | |
| 19823 <search_score name="mzFidelity" value="17.067193460799"/> | |
| 19824 <search_score name="xcorr" value="2.3549003563371445"/> | |
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| 19826 <search_hit hit_rank="3" peptide="HQELLSQQQNFILATQSAQAFLDQHG" peptide_prev_aa="R" peptide_next_aa="H" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="2951.4525826816" massdiff="-0.13879598296" num_tol_term="1" num_missed_cleavages="0" num_matched_ions="35" tot_num_ions="178"> | |
| 19827 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/> | |
| 19828 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/> | |
| 19829 <search_score name="mvh" value="19.389450590163"/> | |
| 19830 <search_score name="mzFidelity" value="17.067193460799"/> | |
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| 19833 <search_hit hit_rank="4" peptide="AKELNILEPQDASDVLGLNSALTVSVKK" peptide_prev_aa="S" peptide_next_aa="G" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" calc_neutral_pep_mass="2952.6019326754" massdiff="0.00188909524" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="36" tot_num_ions="193"> | |
| 19834 <modification_info> | |
| 19835 <mod_aminoacid_mass position="5" mass="115.0269434472"/> | |
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| 19837 <search_score name="mvh" value="18.878944082189"/> | |
| 19838 <search_score name="mzFidelity" value="15.016979577699"/> | |
| 19839 <search_score name="xcorr" value="1.4985242211895593"/> | |
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| 19841 <search_hit hit_rank="5" peptide="LQQRNISATVDKLMLCLPVLEMYSK" peptide_prev_aa="R" peptide_next_aa="L" protein="gi|528968108|ref|XP_005212569.1|" num_tot_proteins="1" calc_neutral_pep_mass="2952.501039225" massdiff="-0.099004355161" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="28" tot_num_ions="169"> | |
| 19842 <modification_info> | |
| 19843 <mod_aminoacid_mass position="2" mass="129.0425935114"/> | |
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| 19847 <search_score name="mvh" value="14.250199248078"/> | |
| 19848 <search_score name="mzFidelity" value="13.437246861948"/> | |
| 19849 <search_score name="xcorr" value="0.95639821296623106"/> | |
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| 19851 <search_hit hit_rank="6" peptide="QTFAVAVDRFAMLAEDRTTLLGPAMNK" peptide_prev_aa="K" peptide_next_aa="T" protein="XXX_gi|528908806|ref|XP_005199342.1|" num_tot_proteins="1" calc_neutral_pep_mass="2949.4733986343" massdiff="-0.100650199061" num_tol_term="2" num_missed_cleavages="2" num_matched_ions="28" tot_num_ions="185"> | |
| 19852 <modification_info> | |
| 19853 <mod_aminoacid_mass position="1" mass="111.0325775114"/> | |
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| 19856 <search_score name="mvh" value="13.175798551987"/> | |
| 19857 <search_score name="mzFidelity" value="9.129145971061"/> | |
| 19858 <search_score name="xcorr" value="1.0569280933581355"/> | |
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| 19861 </spectrum_query> | |
| 19862 <spectrum_query spectrum="201208-378803.104.104.2" spectrumNativeID="sample=1 period=1 cycle=1428 experiment=2" start_scan="104" end_scan="104" precursor_neutral_mass="1168.588478613516" assumed_charge="2" index="393" retention_time_sec="961.06600000002"> | |
| 19863 <search_result num_target_comparisons="5176" num_decoy_comparisons="5985"> | |
| 19864 <search_hit hit_rank="1" peptide="VGPLLACLLGR" peptide_prev_aa="R" peptide_next_aa="Q" protein="gi|27806851|ref|NP_776358.1|" num_tot_proteins="4" calc_neutral_pep_mass="1168.663815117" massdiff="0.075336503484" num_tol_term="2" num_missed_cleavages="0" num_matched_ions="14" tot_num_ions="21"> | |
| 19865 <alternative_protein protein="gi|528993971|ref|XP_005219929.1|"/> | |
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| 19869 <mod_aminoacid_mass position="7" mass="161.0146644778"/> | |
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| 19871 <search_score name="mvh" value="36.405421662056"/> | |
| 19872 <search_score name="mzFidelity" value="68.964090326898"/> | |
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| 19875 <search_hit hit_rank="2" peptide="PRNPAAEKMR" peptide_prev_aa="A" peptide_next_aa="L" protein="gi|297488451|ref|XP_002696970.1|" num_tot_proteins="4" calc_neutral_pep_mass="1168.6135101894" massdiff="0.025031575884" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="5" tot_num_ions="19"> | |
| 19876 <alternative_protein protein="gi|358418103|ref|XP_600387.4|"/> | |
| 19877 <alternative_protein protein="gi|528923273|ref|XP_005196452.1|"/> | |
| 19878 <alternative_protein protein="gi|529000951|ref|XP_005222651.1|"/> | |
| 19879 <search_score name="mvh" value="13.147438029883"/> | |
| 19880 <search_score name="mzFidelity" value="22.906375200816"/> | |
| 19881 <search_score name="xcorr" value="1.104832747632265"/> | |
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| 19884 <modification_info> | |
| 19885 <mod_aminoacid_mass position="8" mass="161.0146644778"/> | |
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| 19887 <search_score name="mvh" value="11.686425009567"/> | |
| 19888 <search_score name="mzFidelity" value="25.291025246864"/> | |
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| 19891 <search_hit hit_rank="4" peptide="PGNAGEAIIKAK" peptide_prev_aa="T" peptide_next_aa="V" protein="XXX_gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" calc_neutral_pep_mass="1167.6611718885" massdiff="0.081358190584" num_tol_term="1" num_missed_cleavages="1" num_matched_ions="5" tot_num_ions="23"> | |
| 19892 <search_score name="mvh" value="7.448992489351"/> | |
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| 19899 <search_result num_target_comparisons="5176" num_decoy_comparisons="5985"> | |
| 19900 <search_hit hit_rank="1" peptide="FPEVFGKEKVNELSK" peptide_prev_aa="P" peptide_next_aa="D" protein="gi|30794348|ref|NP_851372.1|" num_tot_proteins="6" calc_neutral_pep_mass="1750.9141521059" massdiff="0.048764016826" num_tol_term="1" num_missed_cleavages="2" num_matched_ions="9" tot_num_ions="58"> | |
| 19901 <alternative_protein protein="gi|528953234|ref|XP_005208080.1|"/> | |
| 19902 <alternative_protein protein="gi|528953236|ref|XP_005208081.1|"/> | |
| 19903 <alternative_protein protein="gi|528953238|ref|XP_005208082.1|"/> | |
| 19904 <alternative_protein protein="gi|528953240|ref|XP_005208083.1|"/> | |
| 19905 <alternative_protein protein="gi|528953246|ref|XP_005208086.1|"/> | |
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| 19909 <search_score name="mvh" value="15.276852566437"/> | |
| 19910 <search_score name="mzFidelity" value="13.876987745415"/> | |
| 19911 <search_score name="xcorr" value="1.5297381467793907"/> | |
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| 19913 <search_hit hit_rank="2" peptide="LIAEHQTFMEEMTR" peptide_prev_aa="A" peptide_next_aa="K" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="1750.8018262022" massdiff="-0.063561886874" num_tol_term="1" num_missed_cleavages="0" num_matched_ions="10" tot_num_ions="53"> | |
| 19914 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/> | |
| 19915 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/> | |
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| 19917 <mod_aminoacid_mass position="12" mass="147.0353846062"/> | |
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| 19919 <search_score name="mvh" value="11.974753504895"/> | |
| 19920 <search_score name="mzFidelity" value="18.446316300584"/> | |
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| 19923 <search_hit hit_rank="3" peptide="QQFQSSADSLQAWMK" peptide_prev_aa="Y" peptide_next_aa="A" protein="gi|219804516|ref|NP_001137332.1|" num_tot_proteins="3" calc_neutral_pep_mass="1752.7782690432" massdiff="-0.104448877074" num_tol_term="1" num_missed_cleavages="0" num_matched_ions="10" tot_num_ions="57"> | |
| 19924 <alternative_protein protein="gi|528944676|ref|XP_005204734.1|"/> | |
| 19925 <alternative_protein protein="gi|528944678|ref|XP_005204735.1|"/> | |
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| 19927 <mod_aminoacid_mass position="1" mass="111.0325775114"/> | |
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| 19930 <search_score name="mvh" value="11.362299055601"/> | |
| 19931 <search_score name="mzFidelity" value="23.981772958838"/> | |
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