Mercurial > repos > galaxyp > myrimatch
view test-data/201208-378803-cm.pep.xml @ 8:10c31f39528d draft default tip
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/bumbershoot commit 3cc1eda0c28ff138ac19c103c9fbb2a4841beed9"
| author | galaxyp |
|---|---|
| date | Wed, 26 May 2021 19:56:43 +0000 |
| parents | 8240d0714a97 |
| children |
line wrap: on
line source
<?xml version="1.0" encoding="UTF-8"?> <msms_pipeline_analysis date="2014-09-19T11:13:55" xmlns="http://regis-web.systemsbiology.net/pepXML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://sashimi.sourceforge.net/schema_revision/pepXML/pepXML_v117.xsd" summary_xml="C:\idpicker\branches\IDPicker-3\TestData\201208-378803.pep.xml"> <msms_run_summary base_name="C:\idpicker\branches\IDPicker-3\TestData\201208-378803" msManufacturer="unknown" msModel="unknown" raw_data_type="raw" raw_data=".mzML"> <sample_enzyme name="Trypsin/P"> <specificity cut="KR" no_cut="-" sense="C"/> </sample_enzyme> <search_summary base_name="C:\idpicker\branches\IDPicker-3\TestData\201208-378803" search_engine="Comet" search_engine_version="2014.02 rev. 0" precursor_mass_type="monoisotopic" fragment_mass_type="monoisotopic" search_id="1"> <search_database local_path="cow.protein.PRG2012-subset.fasta" type="AA"/> <enzymatic_search_constraint enzyme="Trypsin/P" max_num_internal_cleavages="2" min_number_termini="1"/> <aminoacid_modification aminoacid="M" massdiff="15.994900" mass="147.035385" variable="Y" symbol="*"/> <aminoacid_modification aminoacid="Q" massdiff="-17.026000" mass="111.032578" variable="Y" symbol="#"/> <aminoacid_modification aminoacid="Q" massdiff="0.984016" mass="129.042594" variable="Y" symbol="@"/> <aminoacid_modification aminoacid="N" massdiff="0.984016" mass="115.026943" variable="Y" symbol="@"/> <aminoacid_modification aminoacid="C" massdiff="58.005480" mass="161.014665" variable="N"/> <parameter name="# comet_version " value="2014.02"/> <parameter name="activation_method" value="ALL"/> <parameter name="add_A_alanine" value="0.000000"/> <parameter name="add_B_user_amino_acid" value="0.000000"/> <parameter name="add_C_cysteine" value="58.005480"/> <parameter name="add_Cterm_peptide" value="0.000000"/> <parameter name="add_Cterm_protein" value="0.000000"/> <parameter name="add_D_aspartic_acid" value="0.000000"/> <parameter name="add_E_glutamic_acid" value="0.000000"/> <parameter name="add_F_phenylalanine" value="0.000000"/> <parameter name="add_G_glycine" value="0.000000"/> <parameter name="add_H_histidine" value="0.000000"/> <parameter name="add_I_isoleucine" value="0.000000"/> <parameter name="add_J_user_amino_acid" value="0.000000"/> <parameter name="add_K_lysine" value="0.000000"/> <parameter name="add_L_leucine" value="0.000000"/> <parameter name="add_M_methionine" value="0.000000"/> <parameter name="add_N_asparagine" value="0.000000"/> <parameter name="add_Nterm_peptide" value="0.000000"/> <parameter name="add_Nterm_protein" value="0.000000"/> <parameter name="add_O_ornithine" value="0.000000"/> <parameter name="add_P_proline" value="0.000000"/> <parameter name="add_Q_glutamine" value="0.000000"/> <parameter name="add_R_arginine" value="0.000000"/> <parameter name="add_S_serine" value="0.000000"/> <parameter name="add_T_threonine" value="0.000000"/> <parameter name="add_U_user_amino_acid" value="0.000000"/> <parameter name="add_V_valine" value="0.000000"/> <parameter name="add_W_tryptophan" value="0.000000"/> <parameter name="add_X_user_amino_acid" value="0.000000"/> <parameter name="add_Y_tyrosine" value="0.000000"/> <parameter name="add_Z_user_amino_acid" value="0.000000"/> <parameter name="allowed_missed_cleavage" value="2"/> <parameter name="clear_mz_range" value="0.000000 0.000000"/> <parameter name="clip_nterm_methionine" value="1"/> <parameter name="database_name" value="cow.protein.PRG2012-subset.fasta"/> <parameter name="decoy_prefix" value="XXX_"/> <parameter name="decoy_search" value="1"/> <parameter name="digest_mass_range" value="600.000000 5000.000000"/> <parameter name="fragment_bin_offset" value="0.020000"/> <parameter name="fragment_bin_tol" value="0.020000"/> <parameter name="isotope_error" value="1"/> <parameter name="mass_type_fragment" value="1"/> <parameter name="mass_type_parent" value="1"/> <parameter name="max_fragment_charge" value="3"/> <parameter name="max_precursor_charge" value="6"/> <parameter name="max_variable_mods_in_peptide" value="5"/> <parameter name="minimum_intensity" value="0"/> <parameter name="minimum_peaks" value="10"/> <parameter name="ms_level" value="2"/> <parameter name="nucleotide_reading_frame" value="0"/> <parameter name="num_enzyme_termini" value="1"/> <parameter name="num_output_lines" value="5"/> <parameter name="num_results" value="50"/> <parameter name="num_threads" value="0"/> <parameter name="output_outfiles" value="0"/> <parameter name="output_pepxmlfile" value="1"/> <parameter name="output_percolatorfile" value="0"/> <parameter name="output_sqtfile" value="0"/> <parameter name="output_sqtstream" value="0"/> <parameter name="output_suffix" value="-cm"/> <parameter name="output_txtfile" value="0"/> <parameter name="override_charge" value="0"/> <parameter name="peptide_mass_tolerance" value="20.000000"/> <parameter name="peptide_mass_units" value="2"/> <parameter name="precursor_charge" value="1 5"/> <parameter name="print_expect_score" value="1"/> <parameter name="remove_precursor_peak" value="0"/> <parameter name="remove_precursor_tolerance" value="1.500000"/> <parameter name="sample_enzyme_number" value="2"/> <parameter name="scan_range" value="0 0"/> <parameter name="search_enzyme_number" value="2"/> <parameter name="show_fragment_ions" value="0"/> <parameter name="skip_researching" value="1"/> <parameter name="spectrum_batch_size" value="0"/> <parameter name="theoretical_fragment_ions" value="0"/> <parameter name="use_A_ions" value="0"/> <parameter name="use_B_ions" value="1"/> <parameter name="use_C_ions" value="0"/> <parameter name="use_NL_ions" value="1"/> <parameter name="use_X_ions" value="0"/> <parameter name="use_Y_ions" value="1"/> <parameter name="use_Z_ions" value="0"/> <parameter name="use_sparse_matrix" value="0"/> <parameter name="variable_mod01" value="15.994900 M 0 3 -1 0"/> <parameter name="variable_mod02" value="-17.026000 Q 0 1 0 0"/> <parameter name="variable_mod03" value="0.984016 QN 0 3 -1 0"/> <parameter name="variable_mod04" value="0.000000 X 0 3 -1 0"/> <parameter name="variable_mod05" value="0.000000 X 0 3 -1 0"/> <parameter name="variable_mod06" value="0.000000 X 0 3 -1 0"/> <parameter name="variable_mod07" value="0.000000 X 0 3 -1 0"/> <parameter name="variable_mod08" value="0.000000 X 0 3 -1 0"/> <parameter name="variable_mod09" value="0.000000 X 0 3 -1 0"/> </search_summary> <spectrum_query spectrum="201208-378803.00001.00001.3" spectrumNativeID="sample=1 period=1 cycle=1181 experiment=2" start_scan="1" end_scan="1" precursor_neutral_mass="1517.212359" assumed_charge="3" index="1" retention_time_sec="614.4"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00001.00001.2" spectrumNativeID="sample=1 period=1 cycle=1181 experiment=2" start_scan="1" end_scan="1" precursor_neutral_mass="1011.474906" assumed_charge="2" index="2" retention_time_sec="614.4"> <search_result> <search_hit hit_rank="1" peptide="AEPESDLPR" peptide_prev_aa="H" peptide_next_aa="N" protein="XXX_gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1012.482539" massdiff="-1.007633" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="622"> <search_score name="xcorr" value="0.474"/> <search_score name="deltacn" value="0.001"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="9.70E+000"/> </search_hit> <search_hit hit_rank="2" peptide="ASQGMTPFR" peptide_prev_aa="G" peptide_next_aa="S" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1009.465100" massdiff="2.009806" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="622"> <modification_info modified_peptide="ASQGM[147]TPFR"> <mod_aminoacid_mass position="5" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.473"/> <search_score name="deltacn" value="0.043"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="9.74E+000"/> </search_hit> <search_hit hit_rank="3" peptide="NESLDLYR" peptide_prev_aa="L" peptide_next_aa="L" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="1009.471640" massdiff="2.003266" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="622"> <modification_info modified_peptide="N[115]ESLDLYR"> <mod_aminoacid_mass position="1" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.453"/> <search_score name="deltacn" value="0.208"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.8"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.20E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LMQQSSVSK" peptide_prev_aa="I" peptide_next_aa="F" protein="XXX_gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1008.479763" massdiff="2.995144" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="622"> <modification_info modified_peptide="LMQ[129]Q[129]SSVSK"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.359"/> <search_score name="deltacn" value="0.019"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.9"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.16E+001"/> </search_hit> <search_hit hit_rank="5" peptide="KAMGSNMEK" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1010.452487" massdiff="1.022420" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="622"> <modification_info modified_peptide="KAM[147]GSNMEK"> <mod_aminoacid_mass position="3" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.352"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="3.39E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00002.00002.2" spectrumNativeID="sample=1 period=1 cycle=1183 experiment=2" start_scan="2" end_scan="2" precursor_neutral_mass="830.315297" assumed_charge="2" index="3" retention_time_sec="617.5"> <search_result> <search_hit hit_rank="1" peptide="DGCHWR" peptide_prev_aa="P" peptide_next_aa="G" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="10" calc_neutral_pep_mass="830.312972" massdiff="0.002325" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="76"> <modification_info modified_peptide="DGCHWR"> <mod_aminoacid_mass position="3" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.208"/> <search_score name="deltacn" value="0.166"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.20E+001"/> </search_hit> <search_hit hit_rank="2" peptide="YYNEDQ" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="10" calc_neutral_pep_mass="830.308263" massdiff="0.007034" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="76"> <search_score name="xcorr" value="0.173"/> <search_score name="deltacn" value="0.133"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.36E+001"/> </search_hit> <search_hit hit_rank="3" peptide="TMEEMR" peptide_prev_aa="F" peptide_next_aa="K" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="10" calc_neutral_pep_mass="827.315310" massdiff="2.999987" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="76"> <modification_info modified_peptide="TM[147]EEM[147]R"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="5" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.150"/> <search_score name="deltacn" value="0.081"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.72E+001"/> </search_hit> <search_hit hit_rank="4" peptide="WHCGDR" peptide_prev_aa="P" peptide_next_aa="G" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="10" calc_neutral_pep_mass="830.312972" massdiff="0.002325" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="76"> <modification_info modified_peptide="WHCGDR"> <mod_aminoacid_mass position="3" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.138"/> <search_score name="deltacn" value="0.035"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.73E+001"/> </search_hit> <search_hit hit_rank="5" peptide="MEEMTR" peptide_prev_aa="F" peptide_next_aa="K" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="10" calc_neutral_pep_mass="827.315310" massdiff="2.999987" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="76"> <modification_info modified_peptide="M[147]EEM[147]TR"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.133"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="5.20E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00002.00002.3" spectrumNativeID="sample=1 period=1 cycle=1183 experiment=2" start_scan="2" end_scan="2" precursor_neutral_mass="1245.472945" assumed_charge="3" index="4" retention_time_sec="617.5"> <search_result> <search_hit hit_rank="1" peptide="VNSGCMAMENK" peptide_prev_aa="R" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="40" calc_neutral_pep_mass="1242.456662" massdiff="3.016283" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="54"> <modification_info modified_peptide="VN[115]SGCMAMEN[115]K"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="10" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.288"/> <search_score name="deltacn" value="0.321"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.4"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="5.57E+000"/> </search_hit> <search_hit hit_rank="2" peptide="MMTDKEADGSE" peptide_prev_aa="R" peptide_next_aa="T" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1244.453654" massdiff="1.019291" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="54"> <modification_info modified_peptide="M[147]M[147]TDKEADGSE"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.196"/> <search_score name="deltacn" value="0.168"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.71E+001"/> </search_hit> <search_hit hit_rank="3" peptide="MMSASSYNEDL" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="40" calc_neutral_pep_mass="1246.484589" massdiff="-1.011644" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="54"> <search_score name="xcorr" value="0.163"/> <search_score name="deltacn" value="0.284"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.7"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="4.75E+001"/> </search_hit> <search_hit hit_rank="4" peptide="PYDDDAEYMK" peptide_prev_aa="K" peptide_next_aa="H" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="36" calc_neutral_pep_mass="1245.485970" massdiff="-0.013025" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="54"> <search_score name="xcorr" value="0.117"/> <search_score name="deltacn" value="0.002"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.4"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.05E+002"/> </search_hit> <search_hit hit_rank="5" peptide="CHEVFKQHC" peptide_prev_aa="K" peptide_next_aa="M" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="32" calc_neutral_pep_mass="1246.474695" massdiff="-1.001750" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="54"> <modification_info modified_peptide="CHEVFKQ[129]HC"> <mod_aminoacid_mass position="1" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.116"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.05E+002"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00003.00003.3" spectrumNativeID="sample=1 period=1 cycle=1186 experiment=2" start_scan="3" end_scan="3" precursor_neutral_mass="1575.554503" assumed_charge="3" index="5" retention_time_sec="621.2"> <search_result> <search_hit hit_rank="1" peptide="SSSSASQSNHSCTSM" peptide_prev_aa="R" peptide_next_aa="P" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="56" calc_neutral_pep_mass="1574.546067" massdiff="1.008437" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="100"> <modification_info modified_peptide="SSSSASQ[129]SNHSCTSM[147]"> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="12" mass="161.014665"/> <mod_aminoacid_mass position="15" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.197"/> <search_score name="deltacn" value="0.185"/> <search_score name="deltacnstar" value="0.003"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.11E+001"/> </search_hit> <search_hit hit_rank="2" peptide="SSSSASQSNHSCTSM" peptide_prev_aa="R" peptide_next_aa="P" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="56" calc_neutral_pep_mass="1574.546067" massdiff="1.008437" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="100"> <modification_info modified_peptide="SSSSASQSN[115]HSCTSM[147]"> <mod_aminoacid_mass position="9" mass="115.026943"/> <mod_aminoacid_mass position="12" mass="161.014665"/> <mod_aminoacid_mass position="15" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.196"/> <search_score name="deltacn" value="0.183"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.14E+001"/> </search_hit> <search_hit hit_rank="3" peptide="FNRGCEPCVHHC" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="0" tot_num_ions="44" calc_neutral_pep_mass="1574.570069" massdiff="0.984434" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="100"> <modification_info modified_peptide="FNRGCEPCVHHC"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="161.014665"/> <mod_aminoacid_mass position="12" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.160"/> <search_score name="deltacn" value="0.268"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="5.73E+001"/> </search_hit> <search_hit hit_rank="4" peptide="NCDVQGLEHDMEE" peptide_prev_aa="K" peptide_next_aa="I" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="48" calc_neutral_pep_mass="1575.581738" massdiff="-0.027235" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="100"> <modification_info modified_peptide="NCDVQGLEHDMEE"> <mod_aminoacid_mass position="2" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.117"/> <search_score name="deltacn" value="0.114"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.18E+002"/> </search_hit> <search_hit hit_rank="5" peptide="FNRGCEPCVHHC" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="0" tot_num_ions="44" calc_neutral_pep_mass="1575.554085" massdiff="0.000418" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="100"> <modification_info modified_peptide="FN[115]RGCEPCVHHC"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="161.014665"/> <mod_aminoacid_mass position="12" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.104"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.47E+002"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00003.00003.2" spectrumNativeID="sample=1 period=1 cycle=1186 experiment=2" start_scan="3" end_scan="3" precursor_neutral_mass="1050.369669" assumed_charge="2" index="6" retention_time_sec="621.2"> <search_result> <search_hit hit_rank="1" peptide="MMSASSYNE" peptide_prev_aa="R" peptide_next_aa="D" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1050.363382" massdiff="0.006287" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="2"> <modification_info modified_peptide="M[147]M[147]SASSYNE"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.051"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.26E+002"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00004.00004.3" spectrumNativeID="sample=1 period=1 cycle=1187 experiment=2" start_scan="4" end_scan="4" precursor_neutral_mass="1322.050997" assumed_charge="3" index="7" retention_time_sec="623.8"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00004.00004.2" spectrumNativeID="sample=1 period=1 cycle=1187 experiment=2" start_scan="4" end_scan="4" precursor_neutral_mass="881.367331" assumed_charge="2" index="8" retention_time_sec="623.8"> <search_result> <search_hit hit_rank="1" peptide="ATGPNTNFG" peptide_prev_aa="K" peptide_next_aa="V" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="879.361028" massdiff="2.006304" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="552"> <modification_info modified_peptide="ATGPN[115]TN[115]FG"> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.350"/> <search_score name="deltacn" value="0.059"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.1"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="6.45E+000"/> </search_hit> <search_hit hit_rank="2" peptide="DAMETASR" peptide_prev_aa="K" peptide_next_aa="V" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="879.375631" massdiff="1.991700" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="552"> <search_score name="xcorr" value="0.329"/> <search_score name="deltacn" value="0.094"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="8.76E+000"/> </search_hit> <search_hit hit_rank="3" peptide="DFHSAMR" peptide_prev_aa="F" peptide_next_aa="H" protein="XXX_gi|528968221|ref|XP_005212615.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="878.370472" massdiff="2.996860" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="552"> <modification_info modified_peptide="DFHSAM[147]R"> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.298"/> <search_score name="deltacn" value="0.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.39E+001"/> </search_hit> <search_hit hit_rank="4" peptide="MGTACVSR" peptide_prev_aa="V" peptide_next_aa="A" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="881.373523" massdiff="-0.006192" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="552"> <modification_info modified_peptide="MGTACVSR"> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.298"/> <search_score name="deltacn" value="0.135"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.39E+001"/> </search_hit> <search_hit hit_rank="5" peptide="AMGSNMEK" peptide_prev_aa="K" peptide_next_aa="K" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="14" calc_neutral_pep_mass="882.357524" massdiff="-0.990192" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="552"> <modification_info modified_peptide="AM[147]GSNMEK"> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.258"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="18"/> <search_score name="expect" value="2.51E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00005.00005.2" spectrumNativeID="sample=1 period=1 cycle=1188 experiment=2" start_scan="5" end_scan="5" precursor_neutral_mass="976.317927" assumed_charge="2" index="9" retention_time_sec="626.4"> <search_result> <search_hit hit_rank="1" peptide="NEMAMCGK" peptide_prev_aa="S" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="973.319076" massdiff="2.998851" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="6"> <modification_info modified_peptide="N[115]EM[147]AM[147]CGK"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="5" mass="147.035385"/> <mod_aminoacid_mass position="6" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.528"/> <search_score name="deltacn" value="0.355"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="GCMAMENK" peptide_prev_aa="S" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="973.319076" massdiff="2.998851" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="6"> <modification_info modified_peptide="GCM[147]AM[147]EN[115]K"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="5" mass="147.035385"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.341"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.21E+000"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00005.00005.3" spectrumNativeID="sample=1 period=1 cycle=1188 experiment=2" start_scan="5" end_scan="5" precursor_neutral_mass="1464.476891" assumed_charge="3" index="10" retention_time_sec="626.4"> <search_result> <search_hit hit_rank="1" peptide="NCDVQGLEHDME" peptide_prev_aa="K" peptide_next_aa="E" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1464.502077" massdiff="-0.025186" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="20"> <modification_info modified_peptide="N[115]CDVQ[129]GLEHDM[147]E"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.597"/> <search_score name="deltacn" value="0.718"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="MDHELGQVDCNE" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="44" calc_neutral_pep_mass="1464.502077" massdiff="-0.025186" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="20"> <modification_info modified_peptide="M[147]DHELGQ[129]VDCN[115]E"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="161.014665"/> <mod_aminoacid_mass position="11" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.169"/> <search_score name="deltacn" value="0.304"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="8.76E+001"/> </search_hit> <search_hit hit_rank="3" peptide="CSDFCQDDLADD" peptide_prev_aa="K" peptide_next_aa="D" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="44" calc_neutral_pep_mass="1461.454807" massdiff="3.022084" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="20"> <modification_info modified_peptide="CSDFCQDDLADD"> <mod_aminoacid_mass position="1" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.117"/> <search_score name="deltacn" value="0.120"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.70E+002"/> </search_hit> <search_hit hit_rank="4" peptide="DALDDQCFDSCD" peptide_prev_aa="K" peptide_next_aa="D" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="44" calc_neutral_pep_mass="1461.454807" massdiff="3.022084" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="20"> <modification_info modified_peptide="DALDDQCFDSCD"> <mod_aminoacid_mass position="7" mass="161.014665"/> <mod_aminoacid_mass position="11" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.103"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.04E+002"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00006.00006.2" spectrumNativeID="sample=1 period=1 cycle=1188 experiment=3" start_scan="6" end_scan="6" precursor_neutral_mass="855.392468" assumed_charge="2" index="11" retention_time_sec="628.5"> <search_result> <search_hit hit_rank="1" peptide="SSHSGERP" peptide_prev_aa="R" peptide_next_aa="F" protein="gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="3" tot_num_ions="14" calc_neutral_pep_mass="855.383494" massdiff="0.008974" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="354"> <search_score name="xcorr" value="0.389"/> <search_score name="deltacn" value="0.324"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="9.31E+000"/> </search_hit> <search_hit hit_rank="2" peptide="YFWQGR" peptide_prev_aa="V" peptide_next_aa="E" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="10" calc_neutral_pep_mass="855.402773" massdiff="-0.010305" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="354"> <search_score name="xcorr" value="0.263"/> <search_score name="deltacn" value="0.057"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="4.11E+001"/> </search_hit> <search_hit hit_rank="3" peptide="KNNMFAQ" peptide_prev_aa="R" peptide_next_aa="F" protein="gi|528968106|ref|XP_005212568.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="852.379989" massdiff="3.012479" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="354"> <modification_info modified_peptide="KNNMFAQ[129]"> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.248"/> <search_score name="deltacn" value="0.039"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.9"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="4.91E+001"/> </search_hit> <search_hit hit_rank="4" peptide="ISSYDDR" peptide_prev_aa="R" peptide_next_aa="F" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="854.377011" massdiff="1.015457" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="354"> <search_score name="xcorr" value="0.238"/> <search_score name="deltacn" value="0.040"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.4"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="5.49E+001"/> </search_hit> <search_hit hit_rank="5" peptide="MAGRLMY" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="856.393515" massdiff="-1.001047" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="354"> <modification_info modified_peptide="M[147]AGRLMY"> <mod_aminoacid_mass position="1" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.229"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="6.15E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00006.00006.3" spectrumNativeID="sample=1 period=1 cycle=1188 experiment=3" start_scan="6" end_scan="6" precursor_neutral_mass="1283.088702" assumed_charge="3" index="12" retention_time_sec="628.5"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00007.00007.2" spectrumNativeID="sample=1 period=1 cycle=1189 experiment=2" start_scan="7" end_scan="7" precursor_neutral_mass="817.363085" assumed_charge="2" index="13" retention_time_sec="631.2"> <search_result> <search_hit hit_rank="1" peptide="SNQQQGR" peptide_prev_aa="H" peptide_next_aa="K" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="818.351860" massdiff="-0.988775" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="324"> <modification_info modified_peptide="SNQQ[129]Q[129]GR"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.396"/> <search_score name="deltacn" value="0.012"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.04E+001"/> </search_hit> <search_hit hit_rank="2" peptide="NQSDLKD" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="818.377011" massdiff="-1.013927" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="324"> <search_score name="xcorr" value="0.391"/> <search_score name="deltacn" value="0.017"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.9"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.10E+001"/> </search_hit> <search_hit hit_rank="3" peptide="EQIGENK" peptide_prev_aa="V" peptide_next_aa="Y" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="818.365779" massdiff="-1.002694" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="324"> <modification_info modified_peptide="EQ[129]IGEN[115]K"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.384"/> <search_score name="deltacn" value="0.179"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.18E+001"/> </search_hit> <search_hit hit_rank="4" peptide="ELENAKN" peptide_prev_aa="R" peptide_next_aa="M" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="818.365779" massdiff="-1.002694" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="324"> <modification_info modified_peptide="ELEN[115]AKN[115]"> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.315"/> <search_score name="deltacn" value="0.106"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.58E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ELAEDDK" peptide_prev_aa="V" peptide_next_aa="F" protein="XXX_gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="818.365778" massdiff="-1.002693" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="324"> <search_score name="xcorr" value="0.282"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.9"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="3.78E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00007.00007.3" spectrumNativeID="sample=1 period=1 cycle=1189 experiment=2" start_scan="7" end_scan="7" precursor_neutral_mass="1226.044627" assumed_charge="3" index="14" retention_time_sec="631.2"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00008.00008.2" spectrumNativeID="sample=1 period=1 cycle=1191 experiment=2" start_scan="8" end_scan="8" precursor_neutral_mass="869.408037" assumed_charge="2" index="15" retention_time_sec="634.4"> <search_result> <search_hit hit_rank="1" peptide="AFMNNKQ" peptide_prev_aa="R" peptide_next_aa="F" protein="XXX_gi|528968106|ref|XP_005212568.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="867.390873" massdiff="2.017165" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="426"> <modification_info modified_peptide="AFM[147]NNKQ"> <mod_aminoacid_mass position="3" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.461"/> <search_score name="deltacn" value="0.002"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="14.0"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.01E+001"/> </search_hit> <search_hit hit_rank="2" peptide="EKESMKT" peptide_prev_aa="R" peptide_next_aa="S" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="867.400769" massdiff="2.007269" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="426"> <modification_info modified_peptide="EKESM[147]KT"> <mod_aminoacid_mass position="5" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.460"/> <search_score name="deltacn" value="0.023"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="16.1"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.02E+001"/> </search_hit> <search_hit hit_rank="3" peptide="LEEKHDT" peptide_prev_aa="R" peptide_next_aa="E" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="870.408311" massdiff="-1.000274" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="426"> <search_score name="xcorr" value="0.449"/> <search_score name="deltacn" value="0.066"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="16.1"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.14E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LPPVSCPT" peptide_prev_aa="R" peptide_next_aa="M" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="870.415706" massdiff="-1.007668" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="426"> <modification_info modified_peptide="LPPVSCPT"> <mod_aminoacid_mass position="6" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.419"/> <search_score name="deltacn" value="0.021"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="13.8"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.53E+001"/> </search_hit> <search_hit hit_rank="5" peptide="PCSVPPLT" peptide_prev_aa="R" peptide_next_aa="M" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="870.415706" massdiff="-1.007668" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="426"> <modification_info modified_peptide="PCSVPPLT"> <mod_aminoacid_mass position="2" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.411"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="23.2"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.67E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00008.00008.3" spectrumNativeID="sample=1 period=1 cycle=1191 experiment=2" start_scan="8" end_scan="8" precursor_neutral_mass="1304.112056" assumed_charge="3" index="16" retention_time_sec="634.4"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00009.00009.2" spectrumNativeID="sample=1 period=1 cycle=1191 experiment=3" start_scan="9" end_scan="9" precursor_neutral_mass="799.353321" assumed_charge="2" index="17" retention_time_sec="636.5"> <search_result> <search_hit hit_rank="1" peptide="VEDFYQ" peptide_prev_aa="R" peptide_next_aa="K" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="10" calc_neutral_pep_mass="799.338835" massdiff="0.014486" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="236"> <search_score name="xcorr" value="0.664"/> <search_score name="deltacn" value="0.532"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="21.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="YFDEVQ" peptide_prev_aa="R" peptide_next_aa="K" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="10" calc_neutral_pep_mass="799.338835" massdiff="0.014486" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="236"> <search_score name="xcorr" value="0.311"/> <search_score name="deltacn" value="0.077"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.1"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="7.45E+000"/> </search_hit> <search_hit hit_rank="3" peptide="AICDYR" peptide_prev_aa="K" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="10" calc_neutral_pep_mass="797.337790" massdiff="2.015531" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="236"> <modification_info modified_peptide="AICDYR"> <mod_aminoacid_mass position="3" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.287"/> <search_score name="deltacn" value="0.087"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.08E+001"/> </search_hit> <search_hit hit_rank="4" peptide="MFAQFR" peptide_prev_aa="N" peptide_next_aa="K" protein="gi|528968106|ref|XP_005212568.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="10" calc_neutral_pep_mass="799.368696" massdiff="-0.015375" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="236"> <modification_info modified_peptide="MFAQ[129]FR"> <mod_aminoacid_mass position="4" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.262"/> <search_score name="deltacn" value="0.061"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.58E+001"/> </search_hit> <search_hit hit_rank="5" peptide="HEMVER" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="10" calc_neutral_pep_mass="799.364672" massdiff="-0.011352" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="236"> <search_score name="xcorr" value="0.246"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.2"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.02E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00009.00009.3" spectrumNativeID="sample=1 period=1 cycle=1191 experiment=3" start_scan="9" end_scan="9" precursor_neutral_mass="1199.029981" assumed_charge="3" index="18" retention_time_sec="636.5"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00010.00010.2" spectrumNativeID="sample=1 period=1 cycle=1192 experiment=2" start_scan="10" end_scan="10" precursor_neutral_mass="884.462788" assumed_charge="2" index="19" retention_time_sec="639.1"> <search_result> <search_hit hit_rank="1" peptide="LLYYANK" peptide_prev_aa="E" peptide_next_aa="Y" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="12" calc_neutral_pep_mass="884.464370" massdiff="-0.001582" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="342"> <modification_info modified_peptide="LLYYAN[115]K"> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.726"/> <search_score name="deltacn" value="0.429"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="24.9"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="KLHEIQD" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="882.444697" massdiff="2.018091" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="342"> <modification_info modified_peptide="KLHEIQ[129]D"> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.415"/> <search_score name="deltacn" value="0.039"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.3"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="9.76E+000"/> </search_hit> <search_hit hit_rank="3" peptide="AEQLQAIL" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="885.480749" massdiff="-1.017960" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="342"> <modification_info modified_peptide="AEQLQ[129]AIL"> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.399"/> <search_score name="deltacn" value="0.029"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="1.16E+001"/> </search_hit> <search_hit hit_rank="4" peptide="EAPDLVSR" peptide_prev_aa="D" peptide_next_aa="A" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="14" calc_neutral_pep_mass="885.455596" massdiff="-0.992808" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="342"> <search_score name="xcorr" value="0.387"/> <search_score name="deltacn" value="0.049"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.9"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.31E+001"/> </search_hit> <search_hit hit_rank="5" peptide="AEQLQAIL" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="14" calc_neutral_pep_mass="885.480749" massdiff="-1.017960" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="342"> <modification_info modified_peptide="AEQ[129]LQAIL"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.368"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="20"/> <search_score name="expect" value="1.61E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00010.00010.3" spectrumNativeID="sample=1 period=1 cycle=1192 experiment=2" start_scan="10" end_scan="10" precursor_neutral_mass="1326.694182" assumed_charge="3" index="20" retention_time_sec="639.1"> <search_result> <search_hit hit_rank="1" peptide="SARQIMRTAMK" peptide_prev_aa="R" peptide_next_aa="Y" protein="gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1323.675095" massdiff="3.019087" num_tol_term="2" num_missed_cleavages="2" num_matched_peptides="628"> <modification_info modified_peptide="SARQIM[147]RTAM[147]K"> <mod_aminoacid_mass position="6" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.542"/> <search_score name="deltacn" value="0.029"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.8"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="6.35E+000"/> </search_hit> <search_hit hit_rank="2" peptide="GDRADKQLVVAR" peptide_prev_aa="R" peptide_next_aa="G" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1327.720813" massdiff="-1.026631" num_tol_term="2" num_missed_cleavages="2" num_matched_peptides="628"> <modification_info modified_peptide="GDRADKQ[129]LVVAR"> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.527"/> <search_score name="deltacn" value="0.028"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.5"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="7.38E+000"/> </search_hit> <search_hit hit_rank="3" peptide="TLRGCPAINLGR" peptide_prev_aa="A" peptide_next_aa="K" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="4" tot_num_ions="44" calc_neutral_pep_mass="1327.703054" massdiff="-1.008872" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="628"> <modification_info modified_peptide="TLRGCPAINLGR"> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.512"/> <search_score name="deltacn" value="0.071"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.4"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="8.50E+000"/> </search_hit> <search_hit hit_rank="4" peptide="ITNIHKLMNAR" peptide_prev_aa="L" peptide_next_aa="H" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1326.707791" massdiff="-0.013608" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="628"> <modification_info modified_peptide="ITN[115]IHKLM[147]NAR"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.476"/> <search_score name="deltacn" value="0.079"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.6"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.21E+001"/> </search_hit> <search_hit hit_rank="5" peptide="DTNRKLQHEGK" peptide_prev_aa="T" peptide_next_aa="E" protein="gi|528968106|ref|XP_005212568.1|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1324.684761" massdiff="2.009421" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="628"> <search_score name="xcorr" value="0.438"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="1.74E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00011.00011.3" spectrumNativeID="sample=1 period=1 cycle=1192 experiment=3" start_scan="11" end_scan="11" precursor_neutral_mass="1296.540613" assumed_charge="3" index="21" retention_time_sec="641.2"> <search_result> <search_hit hit_rank="1" peptide="QFVSRCSNQIG" peptide_prev_aa="K" peptide_next_aa="G" protein="XXX_gi|529012038|ref|XP_005226889.1|" num_tot_proteins="2" num_matched_ions="4" tot_num_ions="40" calc_neutral_pep_mass="1297.560867" massdiff="-1.020254" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="502"> <modification_info modified_peptide="QFVSRCSN[115]Q[129]IG"> <mod_aminoacid_mass position="6" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.735"/> <search_score name="deltacn" value="0.227"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="18.6"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.92E+000"/> </search_hit> <search_hit hit_rank="2" peptide="AAENLQEHQQQ" peptide_prev_aa="R" peptide_next_aa="G" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1296.558224" massdiff="-0.017611" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="502"> <modification_info modified_peptide="AAENLQ[129]EHQ[129]QQ"> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.569"/> <search_score name="deltacn" value="0.044"/> <search_score name="deltacnstar" value="0.001"/> <search_score name="spscore" value="3.6"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="1.56E+001"/> </search_hit> <search_hit hit_rank="3" peptide="AAENLQEHQQQ" peptide_prev_aa="R" peptide_next_aa="G" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1296.558224" massdiff="-0.017611" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="502"> <modification_info modified_peptide="AAENLQ[129]EHQQQ[129]"> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.568"/> <search_score name="deltacn" value="0.042"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.6"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="1.57E+001"/> </search_hit> <search_hit hit_rank="4" peptide="AAENLQEHQQQ" peptide_prev_aa="R" peptide_next_aa="G" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1296.558224" massdiff="-0.017611" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="502"> <modification_info modified_peptide="AAENLQ[129]EHQQ[129]Q"> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.568"/> <search_score name="deltacn" value="0.042"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.6"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="1.58E+001"/> </search_hit> <search_hit hit_rank="5" peptide="MERAGGQKTGED" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1294.545930" massdiff="1.994684" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="502"> <modification_info modified_peptide="M[147]ERAGGQ[129]KTGED"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.544"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.7"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.92E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00011.00011.2" spectrumNativeID="sample=1 period=1 cycle=1192 experiment=3" start_scan="11" end_scan="11" precursor_neutral_mass="864.360409" assumed_charge="2" index="22" retention_time_sec="641.2"> <search_result> <search_hit hit_rank="1" peptide="AQDDQASK" peptide_prev_aa="D" peptide_next_aa="Q" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="862.366841" massdiff="1.993568" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="322"> <modification_info modified_peptide="AQDDQ[129]ASK"> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.563"/> <search_score name="deltacn" value="0.144"/> <search_score name="deltacnstar" value="0.053"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="20"/> <search_score name="expect" value="4.06E+000"/> </search_hit> <search_hit hit_rank="2" peptide="AQDDQASK" peptide_prev_aa="D" peptide_next_aa="Q" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="863.350857" massdiff="1.009552" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="322"> <modification_info modified_peptide="AQ[129]DDQ[129]ASK"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.533"/> <search_score name="deltacn" value="0.096"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="20"/> <search_score name="expect" value="5.39E+000"/> </search_hit> <search_hit hit_rank="3" peptide="TDSNIDVT" peptide_prev_aa="R" peptide_next_aa="T" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="14" calc_neutral_pep_mass="864.371258" massdiff="-0.010849" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="322"> <modification_info modified_peptide="TDSN[115]IDVT"> <mod_aminoacid_mass position="4" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.482"/> <search_score name="deltacn" value="0.143"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="24.9"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="8.82E+000"/> </search_hit> <search_hit hit_rank="4" peptide="SAQDDQAK" peptide_prev_aa="D" peptide_next_aa="Q" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="862.366841" massdiff="1.993568" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="322"> <modification_info modified_peptide="SAQDDQ[129]AK"> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.413"/> <search_score name="deltacn" value="0.026"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.6"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="1.71E+001"/> </search_hit> <search_hit hit_rank="5" peptide="TDTSSEAR" peptide_prev_aa="E" peptide_next_aa="H" protein="gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="865.377740" massdiff="-1.017331" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="322"> <search_score name="xcorr" value="0.402"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.2"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.89E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00012.00012.3" spectrumNativeID="sample=1 period=1 cycle=1193 experiment=2" start_scan="12" end_scan="12" precursor_neutral_mass="1373.088559" assumed_charge="3" index="23" retention_time_sec="643.9"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00012.00012.2" spectrumNativeID="sample=1 period=1 cycle=1193 experiment=2" start_scan="12" end_scan="12" precursor_neutral_mass="915.392372" assumed_charge="2" index="24" retention_time_sec="643.9"> <search_result> <search_hit hit_rank="1" peptide="LDQMVFF" peptide_prev_aa="K" peptide_next_aa="W" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="12" calc_neutral_pep_mass="915.404792" massdiff="-0.012419" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="192"> <modification_info modified_peptide="LDQ[129]M[147]VFF"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.651"/> <search_score name="deltacn" value="0.077"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="32.9"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.02E+000"/> </search_hit> <search_hit hit_rank="2" peptide="LDPYHSGQ" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="14" calc_neutral_pep_mass="915.408646" massdiff="-0.016273" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="192"> <search_score name="xcorr" value="0.601"/> <search_score name="deltacn" value="0.523"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="26.9"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.97E+000"/> </search_hit> <search_hit hit_rank="3" peptide="GEEPNLEQ" peptide_prev_aa="K" peptide_next_aa="M" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="915.382157" massdiff="0.010216" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="192"> <modification_info modified_peptide="GEEPNLEQ[129]"> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.287"/> <search_score name="deltacn" value="0.038"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="3.35E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LNTCELY" peptide_prev_aa="R" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="913.373901" massdiff="2.018472" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="192"> <modification_info modified_peptide="LN[115]TCELY"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.276"/> <search_score name="deltacn" value="0.021"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.6"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="3.64E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LDPYHSGQ" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="916.392662" massdiff="-1.000289" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="192"> <modification_info modified_peptide="LDPYHSGQ[129]"> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.270"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.8"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="3.82E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00013.00013.3" spectrumNativeID="sample=1 period=1 cycle=1193 experiment=3" start_scan="13" end_scan="13" precursor_neutral_mass="1560.479001" assumed_charge="3" index="25" retention_time_sec="646.0"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00013.00013.2" spectrumNativeID="sample=1 period=1 cycle=1193 experiment=3" start_scan="13" end_scan="13" precursor_neutral_mass="1040.319334" assumed_charge="2" index="26" retention_time_sec="646.0"> <search_result> <search_hit hit_rank="1" peptide="ECCQAEDK" peptide_prev_aa="Q" peptide_next_aa="G" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="1041.326693" massdiff="-1.007359" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="2"> <modification_info modified_peptide="ECCQ[129]AEDK"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="4" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.083"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.36E+002"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00014.00014.2" spectrumNativeID="sample=1 period=1 cycle=1194 experiment=2" start_scan="14" end_scan="14" precursor_neutral_mass="902.379908" assumed_charge="2" index="27" retention_time_sec="648.6"> <search_result> <search_hit hit_rank="1" peptide="SGAGWTPMP" peptide_prev_aa="-" peptide_next_aa="S" protein="XXX_gi|528961845|ref|XP_005211304.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="902.395638" massdiff="-0.015730" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="164"> <search_score name="xcorr" value="0.348"/> <search_score name="deltacn" value="0.252"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.60E+000"/> </search_hit> <search_hit hit_rank="2" peptide="SVHEMTNS" peptide_prev_aa="K" peptide_next_aa="S" protein="XXX_gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="14" calc_neutral_pep_mass="903.375631" massdiff="-0.995723" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="164"> <search_score name="xcorr" value="0.261"/> <search_score name="deltacn" value="0.074"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="7.46E+000"/> </search_hit> <search_hit hit_rank="3" peptide="TSEEMYK" peptide_prev_aa="V" peptide_next_aa="K" protein="gi|528968108|ref|XP_005212569.1|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="902.369134" massdiff="0.010774" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="164"> <modification_info modified_peptide="TSEEM[147]YK"> <mod_aminoacid_mass position="5" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.241"/> <search_score name="deltacn" value="0.361"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.05E+001"/> </search_hit> <search_hit hit_rank="4" peptide="GSAEGGGSQPG" peptide_prev_aa="R" peptide_next_aa="G" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="20" calc_neutral_pep_mass="902.372989" massdiff="0.006920" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="164"> <search_score name="xcorr" value="0.154"/> <search_score name="deltacn" value="0.066"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="4.82E+001"/> </search_hit> <search_hit hit_rank="5" peptide="EPPGTQDGV" peptide_prev_aa="R" peptide_next_aa="F" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="899.387242" massdiff="2.992666" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="164"> <modification_info modified_peptide="EPPGTQ[129]DGV"> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.144"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="5.77E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00014.00014.3" spectrumNativeID="sample=1 period=1 cycle=1194 experiment=2" start_scan="14" end_scan="14" precursor_neutral_mass="1353.569862" assumed_charge="3" index="28" retention_time_sec="648.6"> <search_result> <search_hit hit_rank="1" peptide="DQLQSGKEQCR" peptide_prev_aa="R" peptide_next_aa="W" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1350.572160" massdiff="2.997702" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="464"> <modification_info modified_peptide="DQLQ[129]SGKEQ[129]CR"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.638"/> <search_score name="deltacn" value="0.347"/> <search_score name="deltacnstar" value="0.007"/> <search_score name="spscore" value="15.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.05E+000"/> </search_hit> <search_hit hit_rank="2" peptide="DQLQSGKEQCR" peptide_prev_aa="R" peptide_next_aa="W" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1351.556176" massdiff="2.013686" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="464"> <modification_info modified_peptide="DQ[129]LQ[129]SGKEQ[129]CR"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.634"/> <search_score name="deltacn" value="0.342"/> <search_score name="deltacnstar" value="0.002"/> <search_score name="spscore" value="2.4"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="3.18E+000"/> </search_hit> <search_hit hit_rank="3" peptide="DQLQSGKEQCR" peptide_prev_aa="R" peptide_next_aa="W" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1350.572160" massdiff="2.997702" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="464"> <modification_info modified_peptide="DQ[129]LQ[129]SGKEQCR"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.632"/> <search_score name="deltacn" value="0.341"/> <search_score name="deltacnstar" value="0.013"/> <search_score name="spscore" value="2.4"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="3.22E+000"/> </search_hit> <search_hit hit_rank="4" peptide="DQLQSGKEQCR" peptide_prev_aa="R" peptide_next_aa="W" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1350.572160" massdiff="2.997702" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="464"> <modification_info modified_peptide="DQ[129]LQSGKEQ[129]CR"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.624"/> <search_score name="deltacn" value="0.332"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.48E+000"/> </search_hit> <search_hit hit_rank="5" peptide="QAAENLQEHQQG" peptide_prev_aa="R" peptide_next_aa="I" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1353.579688" massdiff="-0.009826" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="464"> <modification_info modified_peptide="Q[129]AAENLQEHQ[129]QG"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.417"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.18E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00015.00015.2" spectrumNativeID="sample=1 period=1 cycle=1196 experiment=2" start_scan="15" end_scan="15" precursor_neutral_mass="816.360402" assumed_charge="2" index="29" retention_time_sec="651.8"> <search_result> <search_hit hit_rank="1" peptide="EVMEHR" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="10" calc_neutral_pep_mass="815.359572" massdiff="1.000830" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="194"> <modification_info modified_peptide="EVM[147]EHR"> <mod_aminoacid_mass position="3" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.483"/> <search_score name="deltacn" value="0.052"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.9"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="7.98E+000"/> </search_hit> <search_hit hit_rank="2" peptide="GQQQNSR" peptide_prev_aa="H" peptide_next_aa="K" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="817.367844" massdiff="-1.007442" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="194"> <modification_info modified_peptide="GQ[129]QQNSR"> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.458"/> <search_score name="deltacn" value="0.057"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="1.01E+001"/> </search_hit> <search_hit hit_rank="3" peptide="SYASSFR" peptide_prev_aa="L" peptide_next_aa="G" protein="XXX_gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="816.376617" massdiff="-0.016215" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="194"> <search_score name="xcorr" value="0.432"/> <search_score name="deltacn" value="0.043"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.3"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.29E+001"/> </search_hit> <search_hit hit_rank="4" peptide="GQQQNSR" peptide_prev_aa="H" peptide_next_aa="K" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="817.367844" massdiff="-1.007442" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="194"> <modification_info modified_peptide="GQQ[129]QNSR"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.413"/> <search_score name="deltacn" value="0.008"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="1.53E+001"/> </search_hit> <search_hit hit_rank="5" peptide="SNQQQGR" peptide_prev_aa="H" peptide_next_aa="K" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="817.367844" massdiff="-1.007442" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="194"> <modification_info modified_peptide="SN[115]QQQGR"> <mod_aminoacid_mass position="2" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.410"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.8"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="1.58E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00015.00015.3" spectrumNativeID="sample=1 period=1 cycle=1196 experiment=2" start_scan="15" end_scan="15" precursor_neutral_mass="1224.540603" assumed_charge="3" index="30" retention_time_sec="651.8"> <search_result> <search_hit hit_rank="1" peptide="ENQCTEITAR" peptide_prev_aa="I" peptide_next_aa="E" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="36" calc_neutral_pep_mass="1222.513582" massdiff="2.027021" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="694"> <modification_info modified_peptide="EN[115]QCTEITAR"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.830"/> <search_score name="deltacn" value="0.108"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.97E+000"/> </search_hit> <search_hit hit_rank="2" peptide="SSIMALPCSSVG" peptide_prev_aa="K" peptide_next_aa="D" protein="XXX_gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1224.536611" massdiff="0.003992" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="694"> <modification_info modified_peptide="SSIM[147]ALPCSSVG"> <mod_aminoacid_mass position="4" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.740"/> <search_score name="deltacn" value="0.154"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.9"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="4.12E+000"/> </search_hit> <search_hit hit_rank="3" peptide="SSADSLQAWMK" peptide_prev_aa="Q" peptide_next_aa="A" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1223.549239" massdiff="0.991364" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="694"> <modification_info modified_peptide="SSADSLQ[129]AWMK"> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.626"/> <search_score name="deltacn" value="0.071"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.0"/> <search_score name="sprank" value="22"/> <search_score name="expect" value="1.06E+001"/> </search_hit> <search_hit hit_rank="4" peptide="DFNPFDTSKGP" peptide_prev_aa="K" peptide_next_aa="G" protein="XXX_gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1223.545868" massdiff="0.994735" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="694"> <search_score name="xcorr" value="0.582"/> <search_score name="deltacn" value="0.008"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.5"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="1.53E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ENQCTEITAR" peptide_prev_aa="I" peptide_next_aa="E" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="36" calc_neutral_pep_mass="1222.513582" massdiff="2.027021" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="694"> <modification_info modified_peptide="ENQ[129]CTEITAR"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.577"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.0"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="1.60E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00016.00016.2" spectrumNativeID="sample=1 period=1 cycle=1197 experiment=2" start_scan="16" end_scan="16" precursor_neutral_mass="946.406436" assumed_charge="2" index="31" retention_time_sec="654.4"> <search_result> <search_hit hit_rank="1" peptide="NKTQHTSM" peptide_prev_aa="K" peptide_next_aa="A" protein="XXX_gi|528908802|ref|XP_005199340.1|" num_tot_proteins="8" num_matched_ions="3" tot_num_ions="14" calc_neutral_pep_mass="946.417831" massdiff="-0.011395" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="216"> <modification_info modified_peptide="N[115]KTQHTSM"> <mod_aminoacid_mass position="1" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.413"/> <search_score name="deltacn" value="0.388"/> <search_score name="deltacnstar" value="0.185"/> <search_score name="spscore" value="33.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="6.45E+000"/> </search_hit> <search_hit hit_rank="2" peptide="NKTQHTSM" peptide_prev_aa="K" peptide_next_aa="A" protein="XXX_gi|528908802|ref|XP_005199340.1|" num_tot_proteins="8" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="946.417831" massdiff="-0.011395" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="216"> <modification_info modified_peptide="NKTQ[129]HTSM"> <mod_aminoacid_mass position="4" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.337"/> <search_score name="deltacn" value="0.250"/> <search_score name="deltacnstar" value="0.004"/> <search_score name="spscore" value="17.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.54E+001"/> </search_hit> <search_hit hit_rank="3" peptide="NKTQHTSM" peptide_prev_aa="K" peptide_next_aa="A" protein="XXX_gi|528908802|ref|XP_005199340.1|" num_tot_proteins="8" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="947.401847" massdiff="-0.995411" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="216"> <modification_info modified_peptide="N[115]KTQ[129]HTSM"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="4" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.336"/> <search_score name="deltacn" value="0.247"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.3"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.56E+001"/> </search_hit> <search_hit hit_rank="4" peptide="SIIGGQNEE" peptide_prev_aa="R" peptide_next_aa="V" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="946.424356" massdiff="-0.017920" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="216"> <modification_info modified_peptide="SIIGGQN[115]EE"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.253"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.9"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="4.03E+001"/> </search_hit> <search_hit hit_rank="5" peptide="SIIGGQNEE" peptide_prev_aa="R" peptide_next_aa="V" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="946.424356" massdiff="-0.017920" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="216"> <modification_info modified_peptide="SIIGGQ[129]NEE"> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.252"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.9"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="4.05E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00016.00016.3" spectrumNativeID="sample=1 period=1 cycle=1197 experiment=2" start_scan="16" end_scan="16" precursor_neutral_mass="1419.609653" assumed_charge="3" index="32" retention_time_sec="654.4"> <search_result> <search_hit hit_rank="1" peptide="SADFGDPADEVLGQ" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="52" calc_neutral_pep_mass="1419.615404" massdiff="-0.005750" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="398"> <search_score name="xcorr" value="1.062"/> <search_score name="deltacn" value="0.457"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="20.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.17E-001"/> </search_hit> <search_hit hit_rank="2" peptide="EEVMQGEEPNLK" peptide_prev_aa="E" peptide_next_aa="Y" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1419.607528" massdiff="0.002126" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="398"> <modification_info modified_peptide="EEVM[147]Q[129]GEEPN[115]LK"> <mod_aminoacid_mass position="4" mass="147.035385"/> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.576"/> <search_score name="deltacn" value="0.032"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.6"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.09E+001"/> </search_hit> <search_hit hit_rank="3" peptide="SADFGDPADEVLGQ" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1420.599420" massdiff="-0.989766" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="398"> <modification_info modified_peptide="SADFGDPADEVLGQ[129]"> <mod_aminoacid_mass position="14" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.558"/> <search_score name="deltacn" value="0.084"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.2"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.26E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LNPEEGQMVEEK" peptide_prev_aa="E" peptide_next_aa="Y" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1418.623512" massdiff="0.986142" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="398"> <modification_info modified_peptide="LN[115]PEEGQM[147]VEEK"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.511"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="1.84E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LNPEEGQMVEEK" peptide_prev_aa="E" peptide_next_aa="Y" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1419.607528" massdiff="0.002126" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="398"> <modification_info modified_peptide="LN[115]PEEGQ[129]M[147]VEEK"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.500"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="2.00E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00017.00017.2" spectrumNativeID="sample=1 period=1 cycle=1198 experiment=2" start_scan="17" end_scan="17" precursor_neutral_mass="873.371983" assumed_charge="2" index="33" retention_time_sec="657.1"> <search_result> <search_hit hit_rank="1" peptide="GVTEHSNQ" peptide_prev_aa="R" peptide_next_aa="Q" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="871.367175" massdiff="2.004808" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="242"> <modification_info modified_peptide="GVTEHSN[115]Q"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.478"/> <search_score name="deltacn" value="0.360"/> <search_score name="deltacnstar" value="0.138"/> <search_score name="spscore" value="17.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.27E+000"/> </search_hit> <search_hit hit_rank="2" peptide="GVTEHSNQ" peptide_prev_aa="R" peptide_next_aa="Q" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="871.367175" massdiff="2.004808" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="242"> <modification_info modified_peptide="GVTEHSNQ[129]"> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.412"/> <search_score name="deltacn" value="0.257"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="17.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.96E+000"/> </search_hit> <search_hit hit_rank="3" peptide="YRFGDSQ" peptide_prev_aa="K" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="871.382431" massdiff="1.989552" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="242"> <search_score name="xcorr" value="0.306"/> <search_score name="deltacn" value="0.251"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.3"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.74E+001"/> </search_hit> <search_hit hit_rank="4" peptide="NNMFAQF" peptide_prev_aa="K" peptide_next_aa="R" protein="gi|528968106|ref|XP_005212568.1|" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="12" calc_neutral_pep_mass="871.353440" massdiff="2.018544" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="242"> <modification_info modified_peptide="NNMFAQ[129]F"> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.229"/> <search_score name="deltacn" value="0.038"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="4.34E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ENTAYFQ" peptide_prev_aa="K" peptide_next_aa="F" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="872.355214" massdiff="1.016769" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="242"> <modification_info modified_peptide="EN[115]TAYFQ"> <mod_aminoacid_mass position="2" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.221"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="4.81E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00017.00017.3" spectrumNativeID="sample=1 period=1 cycle=1198 experiment=2" start_scan="17" end_scan="17" precursor_neutral_mass="1310.057975" assumed_charge="3" index="34" retention_time_sec="657.1"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00018.00018.3" spectrumNativeID="sample=1 period=1 cycle=1198 experiment=3" start_scan="18" end_scan="18" precursor_neutral_mass="1836.805069" assumed_charge="3" index="35" retention_time_sec="659.2"> <search_result> <search_hit hit_rank="1" peptide="HSGEEADVYRVCEQR" peptide_prev_aa="I" peptide_next_aa="L" protein="gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1834.790426" massdiff="2.014644" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="644"> <modification_info modified_peptide="HSGEEADVYRVCEQR"> <mod_aminoacid_mass position="12" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.546"/> <search_score name="deltacn" value="0.167"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.60E+001"/> </search_hit> <search_hit hit_rank="2" peptide="KNDECVLEDNSQRTK" peptide_prev_aa="C" peptide_next_aa="W" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1835.831956" massdiff="0.973113" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="644"> <modification_info modified_peptide="KNDECVLEDNSQRTK"> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.455"/> <search_score name="deltacn" value="0.054"/> <search_score name="deltacnstar" value="0.001"/> <search_score name="spscore" value="0.8"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="3.35E+001"/> </search_hit> <search_hit hit_rank="3" peptide="KNDECVLEDNSQRTK" peptide_prev_aa="C" peptide_next_aa="W" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1836.815972" massdiff="-0.010903" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="644"> <modification_info modified_peptide="KN[115]DECVLEDNSQRTK"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.455"/> <search_score name="deltacn" value="0.053"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.8"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="3.36E+001"/> </search_hit> <search_hit hit_rank="4" peptide="GIGELKNEMAMCGSNVQ" peptide_prev_aa="R" peptide_next_aa="F" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="64" calc_neutral_pep_mass="1837.800856" massdiff="-0.995787" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="644"> <modification_info modified_peptide="GIGELKNEMAMCGSNVQ"> <mod_aminoacid_mass position="12" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.430"/> <search_score name="deltacn" value="0.037"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="4.08E+001"/> </search_hit> <search_hit hit_rank="5" peptide="HLFSNCKMSVADLDAQ" peptide_prev_aa="R" peptide_next_aa="S" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="60" calc_neutral_pep_mass="1836.802236" massdiff="0.002833" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="644"> <modification_info modified_peptide="HLFSNCKMSVADLDAQ[129]"> <mod_aminoacid_mass position="6" mass="161.014665"/> <mod_aminoacid_mass position="16" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.415"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="20"/> <search_score name="expect" value="4.64E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00018.00018.2" spectrumNativeID="sample=1 period=1 cycle=1198 experiment=3" start_scan="18" end_scan="18" precursor_neutral_mass="1224.536713" assumed_charge="2" index="36" retention_time_sec="659.2"> <search_result> <search_hit hit_rank="1" peptide="LNIDSMDCQK" peptide_prev_aa="I" peptide_next_aa="Y" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1223.516225" massdiff="1.020488" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="560"> <modification_info modified_peptide="LNIDSMDCQK"> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.339"/> <search_score name="deltacn" value="0.085"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="3.83E+001"/> </search_hit> <search_hit hit_rank="2" peptide="ATEGTQLFNDK" peptide_prev_aa="Y" peptide_next_aa="T" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1224.551013" massdiff="-0.014301" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="560"> <modification_info modified_peptide="ATEGTQ[129]LFN[115]DK"> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.310"/> <search_score name="deltacn" value="0.047"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="5.10E+001"/> </search_hit> <search_hit hit_rank="3" peptide="ARWQEYQSR" peptide_prev_aa="D" peptide_next_aa="V" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1224.552351" massdiff="-0.015638" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="560"> <modification_info modified_peptide="ARWQ[129]EYQ[129]SR"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.295"/> <search_score name="deltacn" value="0.007"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.9"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="5.91E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QVSHYRFCK" peptide_prev_aa="P" peptide_next_aa="V" protein="gi|528968108|ref|XP_005212569.1|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1225.554994" massdiff="-1.018281" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="560"> <modification_info modified_peptide="Q[129]VSHYRFCK"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.293"/> <search_score name="deltacn" value="0.017"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.5"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="6.04E+001"/> </search_hit> <search_hit hit_rank="5" peptide="IDNTPDVMMR" peptide_prev_aa="S" peptide_next_aa="I" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1222.532179" massdiff="2.004534" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="560"> <modification_info modified_peptide="IDNTPDVM[147]M[147]R"> <mod_aminoacid_mass position="8" mass="147.035385"/> <mod_aminoacid_mass position="9" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.288"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.6"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="6.35E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00019.00019.3" spectrumNativeID="sample=1 period=1 cycle=1199 experiment=2" start_scan="19" end_scan="19" precursor_neutral_mass="1821.748880" assumed_charge="3" index="37" retention_time_sec="661.8"> <search_result> <search_hit hit_rank="1" peptide="DFHPQDNKSDHEHGR" peptide_prev_aa="K" peptide_next_aa="I" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1819.751004" massdiff="1.997877" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="280"> <modification_info modified_peptide="DFHPQ[129]DN[115]KSDHEHGR"> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.523"/> <search_score name="deltacn" value="0.277"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="2.84E+000"/> </search_hit> <search_hit hit_rank="2" peptide="FGFGRGCEDCVCPKK" peptide_prev_aa="E" peptide_next_aa="S" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1818.737528" massdiff="3.011352" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="280"> <modification_info modified_peptide="FGFGRGCEDCVCPKK"> <mod_aminoacid_mass position="7" mass="161.014665"/> <mod_aminoacid_mass position="10" mass="161.014665"/> <mod_aminoacid_mass position="12" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.379"/> <search_score name="deltacn" value="0.016"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.25E+001"/> </search_hit> <search_hit hit_rank="3" peptide="FDEEPQKEEAEAAAEQ" peptide_prev_aa="K" peptide_next_aa="C" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="60" calc_neutral_pep_mass="1821.742850" massdiff="0.006031" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="280"> <modification_info modified_peptide="FDEEPQ[129]KEEAEAAAEQ[129]"> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="16" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.373"/> <search_score name="deltacn" value="0.064"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.8"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.33E+001"/> </search_hit> <search_hit hit_rank="4" peptide="DFHPQDNKSDHEHGR" peptide_prev_aa="K" peptide_next_aa="I" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1818.766988" massdiff="2.981893" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="280"> <modification_info modified_peptide="DFHPQ[129]DNKSDHEHGR"> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.349"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.3"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="1.70E+001"/> </search_hit> <search_hit hit_rank="5" peptide="DFHPQDNKSDHEHGR" peptide_prev_aa="K" peptide_next_aa="I" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1818.766988" massdiff="2.981893" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="280"> <modification_info modified_peptide="DFHPQDN[115]KSDHEHGR"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.334"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.3"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="1.98E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00019.00019.2" spectrumNativeID="sample=1 period=1 cycle=1199 experiment=2" start_scan="19" end_scan="19" precursor_neutral_mass="1214.499254" assumed_charge="2" index="38" retention_time_sec="661.8"> <search_result> <search_hit hit_rank="1" peptide="TFNLHNSSSFG" peptide_prev_aa="K" peptide_next_aa="Q" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="20" calc_neutral_pep_mass="1211.509483" massdiff="2.989771" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="158"> <modification_info modified_peptide="TFN[115]LHN[115]SSSFG"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.357"/> <search_score name="deltacn" value="0.222"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.6"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.32E+000"/> </search_hit> <search_hit hit_rank="2" peptide="DQSDDYEVNK" peptide_prev_aa="F" peptide_next_aa="A" protein="XXX_gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1212.478242" massdiff="2.021012" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="158"> <modification_info modified_peptide="DQSDDYEVN[115]K"> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.278"/> <search_score name="deltacn" value="0.073"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.40E+001"/> </search_hit> <search_hit hit_rank="3" peptide="YSTHFNQSMV" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1213.507374" massdiff="0.991880" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="158"> <modification_info modified_peptide="YSTHFNQ[129]SMV"> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.257"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.8"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.89E+001"/> </search_hit> <search_hit hit_rank="4" peptide="YSTHFNQSMV" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1213.507374" massdiff="0.991880" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="158"> <modification_info modified_peptide="YSTHFN[115]QSMV"> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.257"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.8"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.89E+001"/> </search_hit> <search_hit hit_rank="5" peptide="YSTHFNQSMV" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1214.491390" massdiff="0.007864" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="158"> <modification_info modified_peptide="YSTHFN[115]Q[129]SMV"> <mod_aminoacid_mass position="6" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.256"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.8"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.93E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00020.00020.3" spectrumNativeID="sample=1 period=1 cycle=1199 experiment=3" start_scan="20" end_scan="20" precursor_neutral_mass="1482.533961" assumed_charge="3" index="39" retention_time_sec="664.0"> <search_result> <search_hit hit_rank="1" peptide="NDECVLEDNSQR" peptide_prev_aa="K" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="44" calc_neutral_pep_mass="1481.546400" massdiff="0.987562" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="60"> <modification_info modified_peptide="N[115]DECVLEDN[115]SQ[129]R"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="9" mass="115.026943"/> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.451"/> <search_score name="deltacn" value="0.192"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.20E+001"/> </search_hit> <search_hit hit_rank="2" peptide="QSNDELVCEDNR" peptide_prev_aa="K" peptide_next_aa="T" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1481.546400" massdiff="0.987562" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="60"> <modification_info modified_peptide="Q[129]SN[115]DELVCEDN[115]R"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="8" mass="161.014665"/> <mod_aminoacid_mass position="11" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.365"/> <search_score name="deltacn" value="0.158"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.5"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.63E+001"/> </search_hit> <search_hit hit_rank="3" peptide="VCSDQHYNTEQT" peptide_prev_aa="R" peptide_next_aa="S" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1483.540920" massdiff="-1.006959" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="60"> <modification_info modified_peptide="VCSDQ[129]HYN[115]TEQT"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.307"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.44E+001"/> </search_hit> <search_hit hit_rank="4" peptide="VCSDQHYNTEQT" peptide_prev_aa="R" peptide_next_aa="S" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1482.556904" massdiff="-0.022943" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="60"> <modification_info modified_peptide="VCSDQHYN[115]TEQT"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.304"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.55E+001"/> </search_hit> <search_hit hit_rank="5" peptide="VCSDQHYNTEQT" peptide_prev_aa="R" peptide_next_aa="S" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1482.556904" massdiff="-0.022943" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="60"> <modification_info modified_peptide="VCSDQ[129]HYNTEQT"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.304"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.55E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00020.00020.2" spectrumNativeID="sample=1 period=1 cycle=1199 experiment=3" start_scan="20" end_scan="20" precursor_neutral_mass="988.355974" assumed_charge="2" index="40" retention_time_sec="664.0"> <search_result> <search_hit hit_rank="1" peptide="EYDSETDAG" peptide_prev_aa="K" peptide_next_aa="S" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="985.351250" massdiff="3.004724" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="50"> <search_score name="xcorr" value="0.324"/> <search_score name="deltacn" value="0.293"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.7"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="5.67E+000"/> </search_hit> <search_hit hit_rank="2" peptide="ADTESDYEG" peptide_prev_aa="K" peptide_next_aa="S" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="985.351250" massdiff="3.004724" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="50"> <search_score name="xcorr" value="0.229"/> <search_score name="deltacn" value="0.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="2.28E+001"/> </search_hit> <search_hit hit_rank="3" peptide="CRHEPCQ" peptide_prev_aa="R" peptide_next_aa="Y" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="988.337867" massdiff="0.018107" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="50"> <modification_info modified_peptide="CRHEPCQ[129]"> <mod_aminoacid_mass position="1" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.229"/> <search_score name="deltacn" value="0.019"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.28E+001"/> </search_hit> <search_hit hit_rank="4" peptide="CPEHRCQ" peptide_prev_aa="R" peptide_next_aa="Y" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="988.337867" massdiff="0.018107" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="50"> <modification_info modified_peptide="CPEHRCQ[129]"> <mod_aminoacid_mass position="1" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.224"/> <search_score name="deltacn" value="0.223"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.43E+001"/> </search_hit> <search_hit hit_rank="5" peptide="PYDDDAEY" peptide_prev_aa="K" peptide_next_aa="M" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="986.350522" massdiff="2.005452" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="50"> <search_score name="xcorr" value="0.174"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="5.05E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00021.00021.2" spectrumNativeID="sample=1 period=1 cycle=1200 experiment=2" start_scan="21" end_scan="21" precursor_neutral_mass="1124.410142" assumed_charge="2" index="41" retention_time_sec="666.6"> <search_result> <search_hit hit_rank="1" peptide="SEDNPMNQDG" peptide_prev_aa="L" peptide_next_aa="-" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1121.393117" massdiff="3.017025" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="78"> <modification_info modified_peptide="SEDNPM[147]NQDG"> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.448"/> <search_score name="deltacn" value="0.379"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="WENGECAQK" peptide_prev_aa="K" peptide_next_aa="K" protein="gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1123.412806" massdiff="0.997336" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="78"> <modification_info modified_peptide="WEN[115]GECAQ[129]K"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.278"/> <search_score name="deltacn" value="0.186"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="8.42E+000"/> </search_hit> <search_hit hit_rank="3" peptide="SMENEDKEE" peptide_prev_aa="K" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1125.413184" massdiff="-1.003042" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="78"> <modification_info modified_peptide="SM[147]ENEDKEE"> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.226"/> <search_score name="deltacn" value="0.028"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.5"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.96E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QACEGNEWK" peptide_prev_aa="K" peptide_next_aa="K" protein="XXX_gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1123.412806" massdiff="0.997336" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="78"> <modification_info modified_peptide="Q[129]ACEGN[115]EWK"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.220"/> <search_score name="deltacn" value="0.138"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="2.17E+001"/> </search_hit> <search_hit hit_rank="5" peptide="DLTEIQCDM" peptide_prev_aa="K" peptide_next_aa="S" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1125.420593" massdiff="-1.010451" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="78"> <modification_info modified_peptide="DLTEIQ[129]CDM"> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.190"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="3.56E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00021.00021.3" spectrumNativeID="sample=1 period=1 cycle=1200 experiment=2" start_scan="21" end_scan="21" precursor_neutral_mass="1686.615213" assumed_charge="3" index="42" retention_time_sec="666.6"> <search_result> <search_hit hit_rank="1" peptide="SEDNPMNQDLMQSTG" peptide_prev_aa="S" peptide_next_aa="-" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1683.623982" massdiff="2.991230" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="90"> <modification_info modified_peptide="SEDN[115]PM[147]NQDLMQ[129]STG"> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="147.035385"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.420"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.40E+001"/> </search_hit> <search_hit hit_rank="2" peptide="SEDNPMNQDLMQSTG" peptide_prev_aa="S" peptide_next_aa="-" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1683.623982" massdiff="2.991230" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="90"> <modification_info modified_peptide="SEDNPMNQ[129]DLM[147]Q[129]STG"> <mod_aminoacid_mass position="8" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="147.035385"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.413"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.49E+001"/> </search_hit> <search_hit hit_rank="3" peptide="SEDNPMNQDLMQSTG" peptide_prev_aa="S" peptide_next_aa="-" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1683.623982" massdiff="2.991230" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="90"> <modification_info modified_peptide="SEDNPMN[115]QDLM[147]Q[129]STG"> <mod_aminoacid_mass position="7" mass="115.026943"/> <mod_aminoacid_mass position="11" mass="147.035385"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.413"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.49E+001"/> </search_hit> <search_hit hit_rank="4" peptide="SEDNPMNQDLMQSTG" peptide_prev_aa="S" peptide_next_aa="-" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1684.607998" massdiff="2.007214" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="90"> <modification_info modified_peptide="SEDNPMN[115]Q[129]DLM[147]Q[129]STG"> <mod_aminoacid_mass position="7" mass="115.026943"/> <mod_aminoacid_mass position="8" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="147.035385"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.391"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.84E+001"/> </search_hit> <search_hit hit_rank="5" peptide="SEDNPMNQDLMQSTG" peptide_prev_aa="S" peptide_next_aa="-" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1683.623982" massdiff="2.991230" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="90"> <modification_info modified_peptide="SEDN[115]PM[147]N[115]QDLMQSTG"> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="147.035385"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.389"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.86E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00022.00022.2" spectrumNativeID="sample=1 period=1 cycle=1200 experiment=3" start_scan="22" end_scan="22" precursor_neutral_mass="898.390940" assumed_charge="2" index="43" retention_time_sec="668.7"> <search_result> <search_hit hit_rank="1" peptide="TMFTMPR" peptide_prev_aa="G" peptide_next_aa="L" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="12" calc_neutral_pep_mass="898.404080" massdiff="-0.013140" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="266"> <modification_info modified_peptide="TMFTM[147]PR"> <mod_aminoacid_mass position="5" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.455"/> <search_score name="deltacn" value="0.178"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="16.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.52E+000"/> </search_hit> <search_hit hit_rank="2" peptide="EPPGTQDGV" peptide_prev_aa="R" peptide_next_aa="F" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="899.387242" massdiff="-0.996303" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="266"> <modification_info modified_peptide="EPPGTQ[129]DGV"> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.374"/> <search_score name="deltacn" value="0.051"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.5"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="9.75E+000"/> </search_hit> <search_hit hit_rank="3" peptide="TMFTMPR" peptide_prev_aa="G" peptide_next_aa="L" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="12" calc_neutral_pep_mass="898.404080" massdiff="-0.013140" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="266"> <modification_info modified_peptide="TM[147]FTMPR"> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.355"/> <search_score name="deltacn" value="0.021"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.4"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.24E+001"/> </search_hit> <search_hit hit_rank="4" peptide="SASEELQH" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="899.398475" massdiff="-1.007536" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="266"> <search_score name="xcorr" value="0.348"/> <search_score name="deltacn" value="0.082"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="1.36E+001"/> </search_hit> <search_hit hit_rank="5" peptide="EPPGTQDGV" peptide_prev_aa="R" peptide_next_aa="F" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="898.403226" massdiff="-0.012287" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="266"> <search_score name="xcorr" value="0.319"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.5"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.95E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00022.00022.3" spectrumNativeID="sample=1 period=1 cycle=1200 experiment=3" start_scan="22" end_scan="22" precursor_neutral_mass="1347.586409" assumed_charge="3" index="44" retention_time_sec="668.7"> <search_result> <search_hit hit_rank="1" peptide="WWDHIGNGAFM" peptide_prev_aa="-" peptide_next_aa="K" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="40" calc_neutral_pep_mass="1348.565877" massdiff="-0.979468" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="328"> <modification_info modified_peptide="WWDHIGNGAFM[147]"> <mod_aminoacid_mass position="11" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.762"/> <search_score name="deltacn" value="0.038"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.7"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="4.99E+000"/> </search_hit> <search_hit hit_rank="2" peptide="EWRSNLEEQR" peptide_prev_aa="M" peptide_next_aa="A" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="36" calc_neutral_pep_mass="1347.605509" massdiff="-0.019099" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="328"> <modification_info modified_peptide="EWRSN[115]LEEQ[129]R"> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.732"/> <search_score name="deltacn" value="0.022"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.3"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="6.09E+000"/> </search_hit> <search_hit hit_rank="3" peptide="SDDQGSEHTVDR" peptide_prev_aa="S" peptide_next_aa="K" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="44" calc_neutral_pep_mass="1344.554201" massdiff="3.032209" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="328"> <search_score name="xcorr" value="0.717"/> <search_score name="deltacn" value="0.065"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.9"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="6.79E+000"/> </search_hit> <search_hit hit_rank="4" peptide="PDDLGRGGNEEST" peptide_prev_aa="K" peptide_next_aa="K" protein="gi|528935739|ref|XP_005201142.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="48" calc_neutral_pep_mass="1345.574602" massdiff="2.011808" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="328"> <search_score name="xcorr" value="0.670"/> <search_score name="deltacn" value="0.084"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="22"/> <search_score name="expect" value="9.36E+000"/> </search_hit> <search_hit hit_rank="5" peptide="SQLQQEREETT" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1348.610653" massdiff="-1.024244" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="328"> <modification_info modified_peptide="SQ[129]LQQEREETT"> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.613"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.2"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.38E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00023.00023.3" spectrumNativeID="sample=1 period=1 cycle=1200 experiment=4" start_scan="23" end_scan="23" precursor_neutral_mass="1659.608169" assumed_charge="3" index="45" retention_time_sec="670.8"> <search_result> <search_hit hit_rank="1" peptide="HEPCQYGLMNNFQ" peptide_prev_aa="R" peptide_next_aa="V" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="48" calc_neutral_pep_mass="1656.607211" massdiff="3.000958" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="64"> <modification_info modified_peptide="HEPCQ[129]YGLM[147]N[115]NFQ[129]"> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="115.026943"/> <mod_aminoacid_mass position="13" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.291"/> <search_score name="deltacn" value="0.210"/> <search_score name="deltacnstar" value="0.153"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="3.61E+001"/> </search_hit> <search_hit hit_rank="2" peptide="HEPCQYGLMNNFQ" peptide_prev_aa="R" peptide_next_aa="V" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="48" calc_neutral_pep_mass="1656.607211" massdiff="3.000958" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="64"> <modification_info modified_peptide="HEPCQ[129]YGLM[147]N[115]N[115]FQ"> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="115.026943"/> <mod_aminoacid_mass position="11" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.246"/> <search_score name="deltacn" value="0.068"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="5.33E+001"/> </search_hit> <search_hit hit_rank="3" peptide="MVNNGHSFNVEYDD" peptide_prev_aa="R" peptide_next_aa="S" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="52" calc_neutral_pep_mass="1657.620217" massdiff="1.987952" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="64"> <modification_info modified_peptide="M[147]VN[115]NGHSFN[115]VEYDD"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.230"/> <search_score name="deltacn" value="0.205"/> <search_score name="deltacnstar" value="0.001"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="6.17E+001"/> </search_hit> <search_hit hit_rank="4" peptide="MVNNGHSFNVEYDD" peptide_prev_aa="R" peptide_next_aa="S" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="52" calc_neutral_pep_mass="1657.620217" massdiff="1.987952" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="64"> <modification_info modified_peptide="M[147]VNN[115]GHSFN[115]VEYDD"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.229"/> <search_score name="deltacn" value="0.204"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="6.19E+001"/> </search_hit> <search_hit hit_rank="5" peptide="TQSDFFGRFMNMC" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="48" calc_neutral_pep_mass="1657.621086" massdiff="1.987083" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="64"> <modification_info modified_peptide="TQSDFFGRFMN[115]M[147]C"> <mod_aminoacid_mass position="11" mass="115.026943"/> <mod_aminoacid_mass position="12" mass="147.035385"/> <mod_aminoacid_mass position="13" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.183"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="9.32E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00023.00023.2" spectrumNativeID="sample=1 period=1 cycle=1200 experiment=4" start_scan="23" end_scan="23" precursor_neutral_mass="1106.405446" assumed_charge="2" index="46" retention_time_sec="670.8"> <search_result> <search_hit hit_rank="1" peptide="NFCYTLCK" peptide_prev_aa="C" peptide_next_aa="P" protein="XXX_gi|528968221|ref|XP_005212615.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="1107.425285" massdiff="-1.019839" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="42"> <modification_info modified_peptide="N[115]FCYTLCK"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.251"/> <search_score name="deltacn" value="0.041"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="5.25E+000"/> </search_hit> <search_hit hit_rank="2" peptide="CLTYCFNK" peptide_prev_aa="C" peptide_next_aa="P" protein="gi|528968221|ref|XP_005212615.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="1107.425285" massdiff="-1.019839" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="42"> <modification_info modified_peptide="CLTYCFN[115]K"> <mod_aminoacid_mass position="1" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.241"/> <search_score name="deltacn" value="0.018"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="6.39E+000"/> </search_hit> <search_hit hit_rank="3" peptide="IMKDCNYC" peptide_prev_aa="K" peptide_next_aa="R" protein="XXX_gi|528954392|ref|XP_005208526.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="1104.392605" massdiff="2.012842" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="42"> <modification_info modified_peptide="IMKDCNYC"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.236"/> <search_score name="deltacn" value="0.155"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="6.94E+000"/> </search_hit> <search_hit hit_rank="4" peptide="DQNMPNDESG" peptide_prev_aa="L" peptide_next_aa="-" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1105.398217" massdiff="1.007229" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="42"> <search_score name="xcorr" value="0.200"/> <search_score name="deltacn" value="0.254"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.39E+001"/> </search_hit> <search_hit hit_rank="5" peptide="KAQDDQASDQ" peptide_prev_aa="K" peptide_next_aa="V" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1107.420394" massdiff="-1.014948" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="42"> <modification_info modified_peptide="KAQ[129]DDQ[129]ASDQ[129]"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.149"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="3.62E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00024.00024.2" spectrumNativeID="sample=1 period=1 cycle=1201 experiment=2" start_scan="24" end_scan="24" precursor_neutral_mass="878.349536" assumed_charge="2" index="47" retention_time_sec="673.5"> <search_result> <search_hit hit_rank="1" peptide="NESICEK" peptide_prev_aa="R" peptide_next_aa="S" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="879.364398" massdiff="-1.014862" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="236"> <modification_info modified_peptide="NESICEK"> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.395"/> <search_score name="deltacn" value="0.121"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="20.6"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.17E+000"/> </search_hit> <search_hit hit_rank="2" peptide="DATGSVNDT" peptide_prev_aa="R" peptide_next_aa="I" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="878.361755" massdiff="-0.012219" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="236"> <search_score name="xcorr" value="0.348"/> <search_score name="deltacn" value="0.374"/> <search_score name="deltacnstar" value="0.245"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="6.18E+000"/> </search_hit> <search_hit hit_rank="3" peptide="DATGSVNDT" peptide_prev_aa="R" peptide_next_aa="I" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="879.345771" massdiff="-0.996235" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="236"> <modification_info modified_peptide="DATGSVN[115]DT"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.262"/> <search_score name="deltacn" value="0.171"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="2.03E+001"/> </search_hit> <search_hit hit_rank="4" peptide="EQQGTNEA" peptide_prev_aa="K" peptide_next_aa="T" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="876.346106" massdiff="2.003431" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="236"> <modification_info modified_peptide="EQQGTN[115]EA"> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.217"/> <search_score name="deltacn" value="0.016"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.2"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="3.81E+001"/> </search_hit> <search_hit hit_rank="5" peptide="DDACELR" peptide_prev_aa="L" peptide_next_aa="A" protein="XXX_gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="12" calc_neutral_pep_mass="878.343997" massdiff="0.005539" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="236"> <modification_info modified_peptide="DDACELR"> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.214"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="4.00E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00024.00024.3" spectrumNativeID="sample=1 period=1 cycle=1201 experiment=2" start_scan="24" end_scan="24" precursor_neutral_mass="1317.524304" assumed_charge="3" index="48" retention_time_sec="673.5"> <search_result> <search_hit hit_rank="1" peptide="QWSSQGFSGDSK" peptide_prev_aa="V" peptide_next_aa="Y" protein="gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1314.536426" massdiff="2.987878" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="118"> <modification_info modified_peptide="Q[129]WSSQ[129]GFSGDSK"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.871"/> <search_score name="deltacn" value="0.416"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.9"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="SMAGGSRMMTDK" peptide_prev_aa="H" peptide_next_aa="E" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1318.531512" massdiff="-1.007208" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="118"> <modification_info modified_peptide="SM[147]AGGSRM[147]M[147]TDK"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="147.035385"/> <mod_aminoacid_mass position="9" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.509"/> <search_score name="deltacn" value="0.017"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.1"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="6.19E+000"/> </search_hit> <search_hit hit_rank="3" peptide="SDGSFGQSSWQK" peptide_prev_aa="V" peptide_next_aa="Y" protein="XXX_gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1314.536426" massdiff="2.987878" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="118"> <modification_info modified_peptide="SDGSFGQ[129]SSWQ[129]K"> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.500"/> <search_score name="deltacn" value="0.055"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="6.72E+000"/> </search_hit> <search_hit hit_rank="4" peptide="AGPDTSHEDDFK" peptide_prev_aa="S" peptide_next_aa="V" protein="XXX_gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1317.547324" massdiff="-0.023020" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="118"> <search_score name="xcorr" value="0.473"/> <search_score name="deltacn" value="0.092"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="8.67E+000"/> </search_hit> <search_hit hit_rank="5" peptide="WSNYGPMGHDR" peptide_prev_aa="R" peptide_next_aa="G" protein="XXX_gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="4" tot_num_ions="40" calc_neutral_pep_mass="1318.551304" massdiff="-1.027000" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="118"> <search_score name="xcorr" value="0.430"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.30E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00025.00025.2" spectrumNativeID="sample=1 period=1 cycle=1201 experiment=3" start_scan="25" end_scan="25" precursor_neutral_mass="1022.419389" assumed_charge="2" index="49" retention_time_sec="675.6"> <search_result> <search_hit hit_rank="1" peptide="LECDDQNK" peptide_prev_aa="G" peptide_next_aa="R" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="1021.402241" massdiff="1.017149" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="242"> <modification_info modified_peptide="LECDDQNK"> <mod_aminoacid_mass position="3" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.579"/> <search_score name="deltacn" value="0.043"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="14.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="NQDDCELK" peptide_prev_aa="G" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="1021.402241" massdiff="1.017149" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="242"> <modification_info modified_peptide="NQDDCELK"> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.554"/> <search_score name="deltacn" value="0.268"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.2"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.11E+000"/> </search_hit> <search_hit hit_rank="3" peptide="CNLAGNQIE" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1020.406992" massdiff="2.012397" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="242"> <modification_info modified_peptide="CN[115]LAGN[115]QIE"> <mod_aminoacid_mass position="1" mass="161.014665"/> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.406"/> <search_score name="deltacn" value="0.108"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.0"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="6.78E+000"/> </search_hit> <search_hit hit_rank="4" peptide="PDVSNNYGR" peptide_prev_aa="Q" peptide_next_aa="I" protein="XXX_gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="1022.430504" massdiff="-0.011115" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="242"> <modification_info modified_peptide="PDVSN[115]N[115]YGR"> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.362"/> <search_score name="deltacn" value="0.061"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="17.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.16E+001"/> </search_hit> <search_hit hit_rank="5" peptide="DFVTSYCK" peptide_prev_aa="A" peptide_next_aa="L" protein="XXX_gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="1019.426999" massdiff="2.992390" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="242"> <modification_info modified_peptide="DFVTSYCK"> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.340"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.3"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.51E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00025.00025.3" spectrumNativeID="sample=1 period=1 cycle=1201 experiment=3" start_scan="25" end_scan="25" precursor_neutral_mass="1533.629084" assumed_charge="3" index="50" retention_time_sec="675.6"> <search_result> <search_hit hit_rank="1" peptide="QKYNCDKMICR" peptide_prev_aa="A" peptide_next_aa="K" protein="gi|528954392|ref|XP_005208526.1|" num_tot_proteins="2" num_matched_ions="4" tot_num_ions="40" calc_neutral_pep_mass="1533.626172" massdiff="0.002912" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="378"> <modification_info modified_peptide="QKYN[115]CDKM[147]ICR"> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.712"/> <search_score name="deltacn" value="0.095"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="17.9"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.51E+000"/> </search_hit> <search_hit hit_rank="2" peptide="TSNMFCAGYLEGGK" peptide_prev_aa="I" peptide_next_aa="D" protein="gi|528903801|ref|XP_871686.4|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1534.643216" massdiff="-1.014132" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="378"> <modification_info modified_peptide="TSNMFCAGYLEGGK"> <mod_aminoacid_mass position="6" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.645"/> <search_score name="deltacn" value="0.014"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.6"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="6.11E+000"/> </search_hit> <search_hit hit_rank="3" peptide="QKYNCDKMICR" peptide_prev_aa="A" peptide_next_aa="K" protein="gi|528954392|ref|XP_005208526.1|" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1532.642156" massdiff="0.986928" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="378"> <modification_info modified_peptide="QKYNCDKM[147]ICR"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.636"/> <search_score name="deltacn" value="0.131"/> <search_score name="deltacnstar" value="0.095"/> <search_score name="spscore" value="12.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="6.58E+000"/> </search_hit> <search_hit hit_rank="4" peptide="QKYNCDKMICR" peptide_prev_aa="A" peptide_next_aa="K" protein="gi|528954392|ref|XP_005208526.1|" num_tot_proteins="2" num_matched_ions="4" tot_num_ions="40" calc_neutral_pep_mass="1534.610188" massdiff="-0.981104" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="378"> <modification_info modified_peptide="Q[129]KYN[115]CDKM[147]ICR"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.575"/> <search_score name="deltacn" value="0.040"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.6"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.08E+001"/> </search_hit> <search_hit hit_rank="5" peptide="AGMKQRCGTFGDMG" peptide_prev_aa="-" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="52" calc_neutral_pep_mass="1532.605770" massdiff="1.023313" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="378"> <modification_info modified_peptide="AGMKQ[129]RCGTFGDM[147]G"> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="161.014665"/> <mod_aminoacid_mass position="13" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.553"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.4"/> <search_score name="sprank" value="29"/> <search_score name="expect" value="1.31E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00026.00026.3" spectrumNativeID="sample=1 period=1 cycle=1201 experiment=4" start_scan="26" end_scan="26" precursor_neutral_mass="2375.477259" assumed_charge="3" index="51" retention_time_sec="677.7"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00026.00026.2" spectrumNativeID="sample=1 period=1 cycle=1201 experiment=4" start_scan="26" end_scan="26" precursor_neutral_mass="1583.651506" assumed_charge="2" index="52" retention_time_sec="677.7"> <search_result> <search_hit hit_rank="1" peptide="AQNFCLSIFHGGTE" peptide_prev_aa="K" peptide_next_aa="T" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="26" calc_neutral_pep_mass="1582.660975" massdiff="0.990531" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="442"> <modification_info modified_peptide="AQ[129]N[115]FCLSIFHGGTE"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.185"/> <search_score name="deltacn" value="0.182"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.77E+001"/> </search_hit> <search_hit hit_rank="2" peptide="SCLNEKSPNIAMNT" peptide_prev_aa="K" peptide_next_aa="F" protein="XXX_gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="26" calc_neutral_pep_mass="1581.653842" massdiff="1.997665" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="442"> <modification_info modified_peptide="SCLN[115]EKSPN[115]IAMN[115]T"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="115.026943"/> <mod_aminoacid_mass position="13" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.151"/> <search_score name="deltacn" value="0.013"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="3.62E+001"/> </search_hit> <search_hit hit_rank="3" peptide="RMVNNGHSFNVEY" peptide_prev_aa="R" peptide_next_aa="D" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="24" calc_neutral_pep_mass="1583.667442" massdiff="-0.015936" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="442"> <modification_info modified_peptide="RM[147]VN[115]N[115]GHSFNVEY"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.149"/> <search_score name="deltacn" value="0.009"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.9"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.77E+001"/> </search_hit> <search_hit hit_rank="4" peptide="SCLNEKSPNIAMNT" peptide_prev_aa="K" peptide_next_aa="F" protein="XXX_gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="26" calc_neutral_pep_mass="1580.669826" massdiff="2.981681" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="442"> <modification_info modified_peptide="SCLN[115]EKSPNIAMN[115]T"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="13" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.148"/> <search_score name="deltacn" value="0.109"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="3.89E+001"/> </search_hit> <search_hit hit_rank="5" peptide="DFHSAMFVGAGCER" peptide_prev_aa="D" peptide_next_aa="H" protein="XXX_gi|528968221|ref|XP_005212615.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="26" calc_neutral_pep_mass="1583.649698" massdiff="0.001808" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="442"> <modification_info modified_peptide="DFHSAMFVGAGCER"> <mod_aminoacid_mass position="12" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.132"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="5.49E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00027.00027.3" spectrumNativeID="sample=1 period=1 cycle=1202 experiment=2" start_scan="27" end_scan="27" precursor_neutral_mass="1464.686591" assumed_charge="3" index="53" retention_time_sec="680.4"> <search_result> <search_hit hit_rank="1" peptide="QFVKHADMLNMK" peptide_prev_aa="V" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="44" calc_neutral_pep_mass="1462.694858" massdiff="1.991733" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1006"> <modification_info modified_peptide="Q[129]FVKHADMLN[115]MK"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.799"/> <search_score name="deltacn" value="0.258"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.26E+000"/> </search_hit> <search_hit hit_rank="2" peptide="VGMSVLPKDCPEN" peptide_prev_aa="R" peptide_next_aa="P" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1461.647952" massdiff="3.038638" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1006"> <modification_info modified_peptide="VGM[147]SVLPKDCPEN"> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.593"/> <search_score name="deltacn" value="0.107"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.8"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="8.27E+000"/> </search_hit> <search_hit hit_rank="3" peptide="DQFRDLAEESEK" peptide_prev_aa="N" peptide_next_aa="W" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1465.668502" massdiff="-0.981912" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1006"> <search_score name="xcorr" value="0.529"/> <search_score name="deltacn" value="0.008"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.8"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="1.48E+001"/> </search_hit> <search_hit hit_rank="4" peptide="SRMHQIYVQCK" peptide_prev_aa="A" peptide_next_aa="E" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1465.680590" massdiff="-0.993999" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1006"> <modification_info modified_peptide="SRM[147]HQIYVQCK"> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.525"/> <search_score name="deltacn" value="0.045"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.6"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.53E+001"/> </search_hit> <search_hit hit_rank="5" peptide="HVMAVNSGDIVIHG" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1464.703099" massdiff="-0.016509" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1006"> <modification_info modified_peptide="HVM[147]AVN[115]SGDIVIHG"> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.501"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.2"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.91E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00027.00027.2" spectrumNativeID="sample=1 period=1 cycle=1202 experiment=2" start_scan="27" end_scan="27" precursor_neutral_mass="976.457727" assumed_charge="2" index="54" retention_time_sec="680.4"> <search_result> <search_hit hit_rank="1" peptide="QVDPLQMK" peptide_prev_aa="E" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="975.458284" massdiff="0.999443" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="610"> <modification_info modified_peptide="Q[129]VDPLQ[129]M[147]K"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.515"/> <search_score name="deltacn" value="0.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.2"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.79E+001"/> </search_hit> <search_hit hit_rank="2" peptide="QPEQNFSK" peptide_prev_aa="Y" peptide_next_aa="N" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="976.461410" massdiff="-0.003683" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="610"> <search_score name="xcorr" value="0.515"/> <search_score name="deltacn" value="0.011"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.6"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.79E+001"/> </search_hit> <search_hit hit_rank="3" peptide="ASINPNNDK" peptide_prev_aa="S" peptide_next_aa="K" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="973.435255" massdiff="3.022472" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="610"> <modification_info modified_peptide="ASIN[115]PN[115]NDK"> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.509"/> <search_score name="deltacn" value="0.011"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.5"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.88E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LFNNLLNE" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|28849955|ref|NP_788795.1|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="977.470578" massdiff="-1.012851" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="610"> <modification_info modified_peptide="LFN[115]NLLN[115]E"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.504"/> <search_score name="deltacn" value="0.018"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.96E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QDLLCQAK" peptide_prev_aa="L" peptide_next_aa="V" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="975.469532" massdiff="0.988195" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="610"> <modification_info modified_peptide="QDLLCQAK"> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.495"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.6"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="2.10E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00028.00028.2" spectrumNativeID="sample=1 period=1 cycle=1202 experiment=3" start_scan="28" end_scan="28" precursor_neutral_mass="845.342640" assumed_charge="2" index="55" retention_time_sec="682.5"> <search_result> <search_hit hit_rank="1" peptide="SIQWYM" peptide_prev_aa="R" peptide_next_aa="N" protein="XXX_gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="10" calc_neutral_pep_mass="843.347277" massdiff="1.995364" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="84"> <modification_info modified_peptide="SIQ[129]WYM[147]"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.383"/> <search_score name="deltacn" value="0.009"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="38.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="9.09E+000"/> </search_hit> <search_hit hit_rank="2" peptide="SAEGGGSQPG" peptide_prev_aa="R" peptide_next_aa="G" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="846.335541" massdiff="-0.992900" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="84"> <modification_info modified_peptide="SAEGGGSQ[129]PG"> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.380"/> <search_score name="deltacn" value="0.079"/> <search_score name="deltacnstar" value="0.048"/> <search_score name="spscore" value="8.8"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="9.45E+000"/> </search_hit> <search_hit hit_rank="3" peptide="SAEGGGSQPG" peptide_prev_aa="R" peptide_next_aa="G" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="845.351525" massdiff="-0.008884" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="84"> <search_score name="xcorr" value="0.361"/> <search_score name="deltacn" value="0.032"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.1"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.16E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QYNFFGA" peptide_prev_aa="R" peptide_next_aa="S" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="846.354820" massdiff="-1.012179" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="84"> <modification_info modified_peptide="QYN[115]FFGA"> <mod_aminoacid_mass position="3" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.350"/> <search_score name="deltacn" value="0.018"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.1"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.32E+001"/> </search_hit> <search_hit hit_rank="5" peptide="DLQDDIQ" peptide_prev_aa="K" peptide_next_aa="N" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="12" calc_neutral_pep_mass="846.360693" massdiff="-1.018053" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="84"> <modification_info modified_peptide="DLQ[129]DDIQ"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.344"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="1.42E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00028.00028.3" spectrumNativeID="sample=1 period=1 cycle=1202 experiment=3" start_scan="28" end_scan="28" precursor_neutral_mass="1268.013961" assumed_charge="3" index="56" retention_time_sec="682.5"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00029.00029.3" spectrumNativeID="sample=1 period=1 cycle=1203 experiment=2" start_scan="29" end_scan="29" precursor_neutral_mass="1598.204501" assumed_charge="3" index="57" retention_time_sec="685.1"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00029.00029.2" spectrumNativeID="sample=1 period=1 cycle=1203 experiment=2" start_scan="29" end_scan="29" precursor_neutral_mass="1065.469667" assumed_charge="2" index="58" retention_time_sec="685.1"> <search_result> <search_hit hit_rank="1" peptide="CTHYGNVSK" peptide_prev_aa="G" peptide_next_aa="D" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="1065.454945" massdiff="0.014723" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="578"> <modification_info modified_peptide="CTHYGNVSK"> <mod_aminoacid_mass position="1" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.765"/> <search_score name="deltacn" value="0.430"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="14.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="ACSNKNLEK" peptide_prev_aa="Q" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1064.480826" massdiff="0.988842" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="578"> <modification_info modified_peptide="ACSNKN[115]LEK"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.436"/> <search_score name="deltacn" value="0.041"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.2"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="6.25E+000"/> </search_hit> <search_hit hit_rank="3" peptide="STEVDDMIR" peptide_prev_aa="S" peptide_next_aa="K" protein="gi|528968108|ref|XP_005212569.1|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="1064.480825" massdiff="0.988843" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="578"> <search_score name="xcorr" value="0.419"/> <search_score name="deltacn" value="0.038"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="13.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="7.71E+000"/> </search_hit> <search_hit hit_rank="4" peptide="ACSNKNLEK" peptide_prev_aa="Q" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1065.464842" massdiff="0.004826" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="578"> <modification_info modified_peptide="ACSN[115]KN[115]LEK"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.403"/> <search_score name="deltacn" value="0.330"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.7"/> <search_score name="sprank" value="17"/> <search_score name="expect" value="9.33E+000"/> </search_hit> <search_hit hit_rank="5" peptide="RGCSEELSK" peptide_prev_aa="A" peptide_next_aa="E" protein="gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1065.476074" massdiff="-0.006407" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="578"> <modification_info modified_peptide="RGCSEELSK"> <mod_aminoacid_mass position="3" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.270"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.5"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="4.55E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00030.00030.2" spectrumNativeID="sample=1 period=1 cycle=1203 experiment=3" start_scan="30" end_scan="30" precursor_neutral_mass="1038.462310" assumed_charge="2" index="59" retention_time_sec="687.2"> <search_result> <search_hit hit_rank="1" peptide="VAGMEWEAK" peptide_prev_aa="S" peptide_next_aa="A" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1035.469517" massdiff="2.992793" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="458"> <modification_info modified_peptide="VAGM[147]EWEAK"> <mod_aminoacid_mass position="4" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.491"/> <search_score name="deltacn" value="0.171"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="5.68E+000"/> </search_hit> <search_hit hit_rank="2" peptide="AICDYRQI" peptide_prev_aa="K" peptide_next_aa="E" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="1038.480431" massdiff="-0.018122" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="458"> <modification_info modified_peptide="AICDYRQI"> <mod_aminoacid_mass position="3" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.407"/> <search_score name="deltacn" value="0.007"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="14.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.46E+001"/> </search_hit> <search_hit hit_rank="3" peptide="TQEFMDLR" peptide_prev_aa="I" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="1038.480431" massdiff="-0.018121" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="458"> <search_score name="xcorr" value="0.404"/> <search_score name="deltacn" value="0.154"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.51E+001"/> </search_hit> <search_hit hit_rank="4" peptide="EESTSLQEN" peptide_prev_aa="R" peptide_next_aa="S" protein="XXX_gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1035.435649" massdiff="3.026661" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="458"> <search_score name="xcorr" value="0.342"/> <search_score name="deltacn" value="0.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.9"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="3.05E+001"/> </search_hit> <search_hit hit_rank="5" peptide="AEWEMGAVK" peptide_prev_aa="S" peptide_next_aa="A" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1035.469517" massdiff="2.992793" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="458"> <modification_info modified_peptide="AEWEM[147]GAVK"> <mod_aminoacid_mass position="5" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.342"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.5"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="3.06E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00030.00030.3" spectrumNativeID="sample=1 period=1 cycle=1203 experiment=3" start_scan="30" end_scan="30" precursor_neutral_mass="1557.693464" assumed_charge="3" index="60" retention_time_sec="687.2"> <search_result> <search_hit hit_rank="1" peptide="LGVQGQPPSTQGPYQ" peptide_prev_aa="R" peptide_next_aa="R" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1558.715119" massdiff="-1.021655" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="522"> <modification_info modified_peptide="LGVQ[129]GQ[129]PPSTQ[129]GPYQ"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.540"/> <search_score name="deltacn" value="0.056"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.4"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="2.08E+001"/> </search_hit> <search_hit hit_rank="2" peptide="YPGQTSPPQGQVGLQ" peptide_prev_aa="R" peptide_next_aa="R" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1558.715119" massdiff="-1.021655" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="522"> <modification_info modified_peptide="YPGQ[129]TSPPQ[129]GQ[129]VGLQ"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.510"/> <search_score name="deltacn" value="0.014"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.61E+001"/> </search_hit> <search_hit hit_rank="3" peptide="EMMNGIIDPESYR" peptide_prev_aa="S" peptide_next_aa="I" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="48" calc_neutral_pep_mass="1554.669430" massdiff="3.024034" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="522"> <modification_info modified_peptide="EMMN[115]GIIDPESYR"> <mod_aminoacid_mass position="4" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.502"/> <search_score name="deltacn" value="0.038"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="26"/> <search_score name="expect" value="2.75E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LGVQGQPPSTQGPYQ" peptide_prev_aa="R" peptide_next_aa="R" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1558.715119" massdiff="-1.021655" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="522"> <modification_info modified_peptide="LGVQ[129]GQ[129]PPSTQGPYQ[129]"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="15" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.483"/> <search_score name="deltacn" value="0.037"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="18"/> <search_score name="expect" value="3.18E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LINFSCFHASYAK" peptide_prev_aa="A" peptide_next_aa="S" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="48" calc_neutral_pep_mass="1558.712617" massdiff="-1.019152" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="522"> <modification_info modified_peptide="LIN[115]FSCFHASYAK"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.465"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="3.63E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00031.00031.3" spectrumNativeID="sample=1 period=1 cycle=1204 experiment=2" start_scan="31" end_scan="31" precursor_neutral_mass="1866.732833" assumed_charge="3" index="61" retention_time_sec="689.9"> <search_result> <search_hit hit_rank="1" peptide="NNGHSFNVEYDDSQDK" peptide_prev_aa="V" peptide_next_aa="A" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="60" calc_neutral_pep_mass="1867.760899" massdiff="-1.028065" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="102"> <search_score name="xcorr" value="0.476"/> <search_score name="deltacn" value="0.226"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.4"/> <search_score name="sprank" value="19"/> <search_score name="expect" value="5.70E+000"/> </search_hit> <search_hit hit_rank="2" peptide="QNCDQFEKLGEYGFQ" peptide_prev_aa="K" peptide_next_aa="N" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1864.746162" massdiff="1.986672" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="102"> <modification_info modified_peptide="Q[129]N[115]CDQFEKLGEYGFQ"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.368"/> <search_score name="deltacn" value="0.121"/> <search_score name="deltacnstar" value="0.008"/> <search_score name="spscore" value="1.8"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.78E+001"/> </search_hit> <search_hit hit_rank="3" peptide="QNCDQFEKLGEYGFQ" peptide_prev_aa="K" peptide_next_aa="N" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1865.730178" massdiff="1.002656" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="102"> <modification_info modified_peptide="Q[129]N[115]CDQFEKLGEYGFQ[129]"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="15" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.365"/> <search_score name="deltacn" value="0.114"/> <search_score name="deltacnstar" value="0.079"/> <search_score name="spscore" value="7.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.84E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QNCDQFEKLGEYGFQ" peptide_prev_aa="K" peptide_next_aa="N" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1865.730178" massdiff="1.002656" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="102"> <modification_info modified_peptide="Q[129]N[115]CDQ[129]FEKLGEYGFQ"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.336"/> <search_score name="deltacn" value="0.038"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.8"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="2.50E+001"/> </search_hit> <search_hit hit_rank="5" peptide="TISDVFGQYHFNCME" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528968104|ref|XP_005212567.1|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1864.728388" massdiff="2.004445" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="102"> <modification_info modified_peptide="TISDVFGQ[129]YHFNCM[147]E"> <mod_aminoacid_mass position="8" mass="129.042594"/> <mod_aminoacid_mass position="13" mass="161.014665"/> <mod_aminoacid_mass position="14" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.323"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="2.86E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00031.00031.2" spectrumNativeID="sample=1 period=1 cycle=1204 experiment=2" start_scan="31" end_scan="31" precursor_neutral_mass="1244.488556" assumed_charge="2" index="62" retention_time_sec="689.9"> <search_result> <search_hit hit_rank="1" peptide="PDDLGRGGNEES" peptide_prev_aa="K" peptide_next_aa="T" protein="gi|528935739|ref|XP_005201142.1|" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="22" calc_neutral_pep_mass="1245.510939" massdiff="-1.022383" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="82"> <modification_info modified_peptide="PDDLGRGGN[115]EES"> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.475"/> <search_score name="deltacn" value="0.114"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="14.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.73E+000"/> </search_hit> <search_hit hit_rank="2" peptide="LNIDSMDCQK" peptide_prev_aa="I" peptide_next_aa="Y" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1241.479157" massdiff="3.009399" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="82"> <modification_info modified_peptide="LN[115]IDSM[147]DCQ[129]K"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="161.014665"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.421"/> <search_score name="deltacn" value="0.114"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="5.15E+000"/> </search_hit> <search_hit hit_rank="3" peptide="EMSCGKGESEK" peptide_prev_aa="A" peptide_next_aa="L" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1241.490404" massdiff="2.998152" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="82"> <modification_info modified_peptide="EMSCGKGESEK"> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.373"/> <search_score name="deltacn" value="0.018"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.9"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="9.05E+000"/> </search_hit> <search_hit hit_rank="4" peptide="ESEGKGCSMEK" peptide_prev_aa="A" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1241.490404" massdiff="2.998152" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="82"> <modification_info modified_peptide="ESEGKGCSMEK"> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.366"/> <search_score name="deltacn" value="0.079"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.9"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="9.78E+000"/> </search_hit> <search_hit hit_rank="5" peptide="SCPTMKMDEK" peptide_prev_aa="V" peptide_next_aa="T" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1242.493032" massdiff="1.995524" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="82"> <modification_info modified_peptide="SCPTMKM[147]DEK"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.337"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.1"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.37E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00032.00032.3" spectrumNativeID="sample=1 period=1 cycle=1204 experiment=3" start_scan="32" end_scan="32" precursor_neutral_mass="2165.295836" assumed_charge="3" index="63" retention_time_sec="692.0"> <search_result> <search_hit hit_rank="1" peptide="EVQNPRRSIPLGIVITIFI" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="72" calc_neutral_pep_mass="2165.257225" massdiff="0.038611" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="10"> <modification_info modified_peptide="EVQ[129]NPRRSIPLGIVITIFI"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.118"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.43E+002"/> </search_hit> <search_hit hit_rank="2" peptide="EVQNPRRSIPLGIVITIFI" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="72" calc_neutral_pep_mass="2165.257225" massdiff="0.038611" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="10"> <modification_info modified_peptide="EVQN[115]PRRSIPLGIVITIFI"> <mod_aminoacid_mass position="4" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.118"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.44E+002"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00032.00032.2" spectrumNativeID="sample=1 period=1 cycle=1204 experiment=3" start_scan="32" end_scan="32" precursor_neutral_mass="1443.530557" assumed_charge="2" index="64" retention_time_sec="692.0"> <search_result> <search_hit hit_rank="1" peptide="LFEESEDGMEEQ" peptide_prev_aa="R" peptide_next_aa="V" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="22" calc_neutral_pep_mass="1442.539522" massdiff="0.991036" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="6"> <modification_info modified_peptide="LFEESEDGMEEQ[129]"> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.148"/> <search_score name="deltacn" value="0.153"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="6.12E+001"/> </search_hit> <search_hit hit_rank="2" peptide="EEMGDESEEFLQ" peptide_prev_aa="R" peptide_next_aa="V" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="22" calc_neutral_pep_mass="1442.539522" massdiff="0.991036" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="6"> <modification_info modified_peptide="EEMGDESEEFLQ[129]"> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.125"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="8.90E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00033.00033.2" spectrumNativeID="sample=1 period=1 cycle=1204 experiment=4" start_scan="33" end_scan="33" precursor_neutral_mass="926.360519" assumed_charge="2" index="65" retention_time_sec="694.2"> <search_result> <search_hit hit_rank="1" peptide="DFDSADSGL" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="925.366506" massdiff="0.994012" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="290"> <search_score name="xcorr" value="0.592"/> <search_score name="deltacn" value="0.243"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="27.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="TSEMDVTE" peptide_prev_aa="K" peptide_next_aa="V" protein="XXX_gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="926.353878" massdiff="0.006641" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="290"> <modification_info modified_peptide="TSEM[147]DVTE"> <mod_aminoacid_mass position="4" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.449"/> <search_score name="deltacn" value="0.082"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.6"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.84E+000"/> </search_hit> <search_hit hit_rank="3" peptide="TVDMESTE" peptide_prev_aa="K" peptide_next_aa="V" protein="gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="926.353878" massdiff="0.006641" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="290"> <modification_info modified_peptide="TVDM[147]ESTE"> <mod_aminoacid_mass position="4" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.412"/> <search_score name="deltacn" value="0.009"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.0"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="3.03E+000"/> </search_hit> <search_hit hit_rank="4" peptide="FCVGSELD" peptide_prev_aa="R" peptide_next_aa="I" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="926.369149" massdiff="-0.008631" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="290"> <modification_info modified_peptide="FCVGSELD"> <mod_aminoacid_mass position="2" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.408"/> <search_score name="deltacn" value="0.237"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.6"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="3.18E+000"/> </search_hit> <search_hit hit_rank="5" peptide="DSMAQDEK" peptide_prev_aa="Q" peptide_next_aa="E" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="923.354227" massdiff="3.006291" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="290"> <modification_info modified_peptide="DSMAQ[129]DEK"> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.311"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.19E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00033.00033.3" spectrumNativeID="sample=1 period=1 cycle=1204 experiment=4" start_scan="33" end_scan="33" precursor_neutral_mass="1389.540778" assumed_charge="3" index="66" retention_time_sec="694.2"> <search_result> <search_hit hit_rank="1" peptide="VNSGCMAMENKL" peptide_prev_aa="R" peptide_next_aa="E" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="44" calc_neutral_pep_mass="1386.546510" massdiff="2.994269" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="152"> <modification_info modified_peptide="VN[115]SGCM[147]AM[147]ENKL"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.314"/> <search_score name="deltacn" value="0.022"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.7"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.29E+001"/> </search_hit> <search_hit hit_rank="2" peptide="DMVTQFMETADS" peptide_prev_aa="R" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="44" calc_neutral_pep_mass="1390.526834" massdiff="-0.986056" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="152"> <modification_info modified_peptide="DM[147]VTQ[129]FMETADS"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.307"/> <search_score name="deltacn" value="0.049"/> <search_score name="deltacnstar" value="0.018"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.42E+001"/> </search_hit> <search_hit hit_rank="3" peptide="DMVTQFMETADS" peptide_prev_aa="R" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1389.542818" massdiff="-0.002040" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="152"> <modification_info modified_peptide="DM[147]VTQFMETADS"> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.302"/> <search_score name="deltacn" value="0.032"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.54E+001"/> </search_hit> <search_hit hit_rank="4" peptide="FGRGCESCVYPG" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="44" calc_neutral_pep_mass="1389.532938" massdiff="0.007840" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="152"> <modification_info modified_peptide="FGRGCESCVYPG"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.292"/> <search_score name="deltacn" value="0.009"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.7"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.76E+001"/> </search_hit> <search_hit hit_rank="5" peptide="EIEKMCNFHY" peptide_prev_aa="R" peptide_next_aa="Q" protein="gi|528968104|ref|XP_005212567.1|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="36" calc_neutral_pep_mass="1386.558409" massdiff="2.982369" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="152"> <modification_info modified_peptide="EIEKM[147]CNFHY"> <mod_aminoacid_mass position="5" mass="147.035385"/> <mod_aminoacid_mass position="6" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.289"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.83E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00034.00034.3" spectrumNativeID="sample=1 period=1 cycle=1206 experiment=2" start_scan="34" end_scan="34" precursor_neutral_mass="1866.343049" assumed_charge="3" index="67" retention_time_sec="697.3"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00034.00034.2" spectrumNativeID="sample=1 period=1 cycle=1206 experiment=2" start_scan="34" end_scan="34" precursor_neutral_mass="1244.228700" assumed_charge="2" index="68" retention_time_sec="697.3"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00035.00035.3" spectrumNativeID="sample=1 period=1 cycle=1207 experiment=2" start_scan="35" end_scan="35" precursor_neutral_mass="1617.715550" assumed_charge="3" index="69" retention_time_sec="700.0"> <search_result> <search_hit hit_rank="1" peptide="DGFGPTMGLISMYSK" peptide_prev_aa="A" peptide_next_aa="T" protein="XXX_gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1618.737101" massdiff="-1.021551" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="430"> <modification_info modified_peptide="DGFGPTM[147]GLISMYSK"> <mod_aminoacid_mass position="7" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.751"/> <search_score name="deltacn" value="0.051"/> <search_score name="deltacnstar" value="0.041"/> <search_score name="spscore" value="3.2"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="4.50E+000"/> </search_hit> <search_hit hit_rank="2" peptide="DGFGPTMGLISMYSK" peptide_prev_aa="A" peptide_next_aa="T" protein="XXX_gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1618.737101" massdiff="-1.021551" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="430"> <modification_info modified_peptide="DGFGPTMGLISM[147]YSK"> <mod_aminoacid_mass position="12" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.721"/> <search_score name="deltacn" value="0.010"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="5.65E+000"/> </search_hit> <search_hit hit_rank="3" peptide="RDVTHESGQDDSSGK" peptide_prev_aa="W" peptide_next_aa="K" protein="XXX_gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1617.686672" massdiff="0.028878" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="430"> <modification_info modified_peptide="RDVTHESGQ[129]DDSSGK"> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.713"/> <search_score name="deltacn" value="0.192"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.2"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="5.96E+000"/> </search_hit> <search_hit hit_rank="4" peptide="NEAQEDGPTGEGNAVK" peptide_prev_aa="V" peptide_next_aa="G" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="60" calc_neutral_pep_mass="1616.680190" massdiff="1.035360" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="430"> <modification_info modified_peptide="N[115]EAQ[129]EDGPTGEGNAVK"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="4" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.577"/> <search_score name="deltacn" value="0.014"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.64E+001"/> </search_hit> <search_hit hit_rank="5" peptide="PHTSSRQRSEMMR" peptide_prev_aa="K" peptide_next_aa="K" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="48" calc_neutral_pep_mass="1617.746377" massdiff="-0.030828" num_tol_term="2" num_missed_cleavages="2" num_matched_peptides="430"> <modification_info modified_peptide="PHTSSRQRSEMM[147]R"> <mod_aminoacid_mass position="12" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.569"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.75E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00035.00035.2" spectrumNativeID="sample=1 period=1 cycle=1207 experiment=2" start_scan="35" end_scan="35" precursor_neutral_mass="1078.477033" assumed_charge="2" index="70" retention_time_sec="700.0"> <search_result> <search_hit hit_rank="1" peptide="LTSQLQQEQ" peptide_prev_aa="R" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1076.487351" massdiff="1.989682" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="626"> <modification_info modified_peptide="LTSQ[129]LQ[129]Q[129]EQ"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.419"/> <search_score name="deltacn" value="0.083"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="21"/> <search_score name="expect" value="1.58E+001"/> </search_hit> <search_hit hit_rank="2" peptide="SDQLLDELM" peptide_prev_aa="R" peptide_next_aa="D" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1079.469243" massdiff="-0.992210" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="626"> <modification_info modified_peptide="SDQ[129]LLDELM[147]"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.384"/> <search_score name="deltacn" value="0.038"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="2.26E+001"/> </search_hit> <search_hit hit_rank="3" peptide="GMSDVAQEKN" peptide_prev_aa="K" peptide_next_aa="R" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1078.460090" massdiff="0.016944" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="626"> <modification_info modified_peptide="GMSDVAQEKN[115]"> <mod_aminoacid_mass position="10" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.369"/> <search_score name="deltacn" value="0.017"/> <search_score name="deltacnstar" value="0.008"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="2.62E+001"/> </search_hit> <search_hit hit_rank="4" peptide="GMSDVAQEKN" peptide_prev_aa="K" peptide_next_aa="R" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1078.460090" massdiff="0.016944" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="626"> <modification_info modified_peptide="GMSDVAQ[129]EKN"> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.366"/> <search_score name="deltacn" value="0.009"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="2.70E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ESTEELQQI" peptide_prev_aa="K" peptide_next_aa="R" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1077.471366" massdiff="1.005667" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="626"> <modification_info modified_peptide="ESTEELQ[129]Q[129]I"> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.363"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="2.80E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00036.00036.2" spectrumNativeID="sample=1 period=1 cycle=1207 experiment=3" start_scan="36" end_scan="36" precursor_neutral_mass="932.457606" assumed_charge="2" index="71" retention_time_sec="702.1"> <search_result> <search_hit hit_rank="1" peptide="RLNLSSNQ" peptide_prev_aa="R" peptide_next_aa="I" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="14" calc_neutral_pep_mass="931.472309" massdiff="0.985296" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="846"> <modification_info modified_peptide="RLNLSSN[115]Q"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.467"/> <search_score name="deltacn" value="0.203"/> <search_score name="deltacnstar" value="0.065"/> <search_score name="spscore" value="13.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="5.29E+000"/> </search_hit> <search_hit hit_rank="2" peptide="RLNLSSNQ" peptide_prev_aa="R" peptide_next_aa="I" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="14" calc_neutral_pep_mass="931.472309" massdiff="0.985296" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="846"> <modification_info modified_peptide="RLNLSSNQ[129]"> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.437"/> <search_score name="deltacn" value="0.148"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="13.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="7.48E+000"/> </search_hit> <search_hit hit_rank="3" peptide="DLPFLSNE" peptide_prev_aa="K" peptide_next_aa="Y" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="933.444363" massdiff="-0.986757" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="846"> <search_score name="xcorr" value="0.372"/> <search_score name="deltacn" value="0.055"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.9"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.58E+001"/> </search_hit> <search_hit hit_rank="4" peptide="RLNLSSNQ" peptide_prev_aa="R" peptide_next_aa="I" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="932.456325" massdiff="0.001280" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="846"> <modification_info modified_peptide="RLN[115]LSSN[115]Q"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.352"/> <search_score name="deltacn" value="0.009"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.9"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.00E+001"/> </search_hit> <search_hit hit_rank="5" peptide="PKEGTHTY" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="24" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="931.439946" massdiff="1.017660" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="846"> <search_score name="xcorr" value="0.348"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.7"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="2.07E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00036.00036.3" spectrumNativeID="sample=1 period=1 cycle=1207 experiment=3" start_scan="36" end_scan="36" precursor_neutral_mass="1398.686408" assumed_charge="3" index="72" retention_time_sec="702.1"> <search_result> <search_hit hit_rank="1" peptide="PRNVKPGSVSGTNS" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1399.705557" massdiff="-1.019148" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="910"> <modification_info modified_peptide="PRN[115]VKPGSVSGTNS"> <mod_aminoacid_mass position="3" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.541"/> <search_score name="deltacn" value="0.083"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.7"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="4.28E+000"/> </search_hit> <search_hit hit_rank="2" peptide="LQQSDGFRYKR" peptide_prev_aa="N" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1397.705163" massdiff="0.981246" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="910"> <modification_info modified_peptide="LQQ[129]SDGFRYKR"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.496"/> <search_score name="deltacn" value="0.135"/> <search_score name="deltacnstar" value="0.073"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="6.83E+000"/> </search_hit> <search_hit hit_rank="3" peptide="LQQSDGFRYKR" peptide_prev_aa="N" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1397.705163" massdiff="0.981246" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="910"> <modification_info modified_peptide="LQ[129]QSDGFRYKR"> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.460"/> <search_score name="deltacn" value="0.067"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="9.94E+000"/> </search_hit> <search_hit hit_rank="4" peptide="QQPPASTSQTLDK" peptide_prev_aa="E" peptide_next_aa="N" protein="gi|297486082|ref|XP_002695413.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="48" calc_neutral_pep_mass="1399.694323" massdiff="-1.007915" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="910"> <search_score name="xcorr" value="0.429"/> <search_score name="deltacn" value="0.169"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.2"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.37E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QDHKVDFILQR" peptide_prev_aa="G" peptide_next_aa="E" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1399.709580" massdiff="-1.023171" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="910"> <modification_info modified_peptide="Q[129]DHKVDFILQ[129]R"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.357"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.88E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00037.00037.3" spectrumNativeID="sample=1 period=1 cycle=1208 experiment=2" start_scan="37" end_scan="37" precursor_neutral_mass="1860.744174" assumed_charge="3" index="73" retention_time_sec="704.7"> <search_result> <search_hit hit_rank="1" peptide="SLGQDSETYLQSEICE" peptide_prev_aa="K" peptide_next_aa="F" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="60" calc_neutral_pep_mass="1859.761871" massdiff="0.982304" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="112"> <modification_info modified_peptide="SLGQ[129]DSETYLQSEICE"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="15" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.561"/> <search_score name="deltacn" value="0.071"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.5"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="7.26E+000"/> </search_hit> <search_hit hit_rank="2" peptide="EMFSQLADLDDELDGM" peptide_prev_aa="R" peptide_next_aa="G" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="60" calc_neutral_pep_mass="1860.728098" massdiff="0.016076" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="112"> <modification_info modified_peptide="EM[147]FSQ[129]LADLDDELDGM[147]"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="16" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.521"/> <search_score name="deltacn" value="0.001"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.2"/> <search_score name="sprank" value="17"/> <search_score name="expect" value="9.93E+000"/> </search_hit> <search_hit hit_rank="3" peptide="SRCSRESLTEEDSSSE" peptide_prev_aa="-" peptide_next_aa="R" protein="XXX_gi|219804516|ref|NP_001137332.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="60" calc_neutral_pep_mass="1858.748680" massdiff="1.995494" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="112"> <modification_info modified_peptide="SRCSRESLTEEDSSSE"> <mod_aminoacid_mass position="3" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.521"/> <search_score name="deltacn" value="0.059"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="9.97E+000"/> </search_hit> <search_hit hit_rank="4" peptide="SLGQDSETYLQSEICE" peptide_prev_aa="K" peptide_next_aa="F" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="60" calc_neutral_pep_mass="1860.745887" massdiff="-0.001712" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="112"> <modification_info modified_peptide="SLGQ[129]DSETYLQ[129]SEICE"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="129.042594"/> <mod_aminoacid_mass position="15" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.490"/> <search_score name="deltacn" value="0.029"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.27E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ELKNEMAMCGSNVRQG" peptide_prev_aa="K" peptide_next_aa="I" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="60" calc_neutral_pep_mass="1857.754271" massdiff="2.989903" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="112"> <modification_info modified_peptide="ELKNEM[147]AM[147]CGSN[115]VRQ[129]G"> <mod_aminoacid_mass position="6" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="147.035385"/> <mod_aminoacid_mass position="9" mass="161.014665"/> <mod_aminoacid_mass position="12" mass="115.026943"/> <mod_aminoacid_mass position="15" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.476"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.42E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00037.00037.2" spectrumNativeID="sample=1 period=1 cycle=1208 experiment=2" start_scan="37" end_scan="37" precursor_neutral_mass="1240.496116" assumed_charge="2" index="74" retention_time_sec="704.7"> <search_result> <search_hit hit_rank="1" peptide="TPDVMMSDTEN" peptide_prev_aa="K" peptide_next_aa="D" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1238.479504" massdiff="2.016612" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="380"> <search_score name="xcorr" value="0.666"/> <search_score name="deltacn" value="0.262"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.2"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="ESEGKGCSMEK" peptide_prev_aa="A" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1241.490404" massdiff="-0.994287" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="380"> <modification_info modified_peptide="ESEGKGCSMEK"> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.492"/> <search_score name="deltacn" value="0.134"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="4.55E+000"/> </search_hit> <search_hit hit_rank="3" peptide="TNAQEKQCTR" peptide_prev_aa="L" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1238.508498" massdiff="1.987619" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="380"> <modification_info modified_peptide="TN[115]AQ[129]EKQ[129]CTR"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.426"/> <search_score name="deltacn" value="0.015"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.9"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="9.14E+000"/> </search_hit> <search_hit hit_rank="4" peptide="QCDMSDINLK" peptide_prev_aa="I" peptide_next_aa="Y" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1241.479157" massdiff="-0.983040" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="380"> <modification_info modified_peptide="Q[129]CDM[147]SDIN[115]LK"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="4" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.420"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="9.77E+000"/> </search_hit> <search_hit hit_rank="5" peptide="QCDMSDINLK" peptide_prev_aa="I" peptide_next_aa="Y" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1240.495141" massdiff="0.000976" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="380"> <modification_info modified_peptide="QCDM[147]SDIN[115]LK"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="4" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.417"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="1.01E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00038.00038.2" spectrumNativeID="sample=1 period=1 cycle=1208 experiment=3" start_scan="38" end_scan="38" precursor_neutral_mass="978.393545" assumed_charge="2" index="75" retention_time_sec="706.8"> <search_result> <search_hit hit_rank="1" peptide="SSAPGEYHQ" peptide_prev_aa="R" peptide_next_aa="V" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="975.393390" massdiff="3.000155" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="220"> <modification_info modified_peptide="SSAPGEYHQ[129]"> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.399"/> <search_score name="deltacn" value="0.103"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="6.38E+000"/> </search_hit> <search_hit hit_rank="2" peptide="NGNVTACSR" peptide_prev_aa="M" peptide_next_aa="G" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="979.402910" massdiff="-1.009364" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="220"> <modification_info modified_peptide="N[115]GNVTACSR"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.358"/> <search_score name="deltacn" value="0.046"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.1"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.02E+001"/> </search_hit> <search_hit hit_rank="3" peptide="SCATVNGNR" peptide_prev_aa="M" peptide_next_aa="G" protein="XXX_gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="979.402910" massdiff="-1.009364" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="220"> <modification_info modified_peptide="SCATVNGN[115]R"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.341"/> <search_score name="deltacn" value="0.107"/> <search_score name="deltacnstar" value="0.009"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.24E+001"/> </search_hit> <search_hit hit_rank="4" peptide="SCATVNGNR" peptide_prev_aa="M" peptide_next_aa="G" protein="XXX_gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="979.402910" massdiff="-1.009364" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="220"> <modification_info modified_peptide="SCATVN[115]GNR"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.338"/> <search_score name="deltacn" value="0.099"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.28E+001"/> </search_hit> <search_hit hit_rank="5" peptide="EGTSMDPAR" peptide_prev_aa="P" peptide_next_aa="E" protein="XXX_gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="978.407645" massdiff="-0.014100" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="220"> <modification_info modified_peptide="EGTSM[147]DPAR"> <mod_aminoacid_mass position="5" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.305"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="1.88E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00038.00038.3" spectrumNativeID="sample=1 period=1 cycle=1208 experiment=3" start_scan="38" end_scan="38" precursor_neutral_mass="1467.590318" assumed_charge="3" index="76" retention_time_sec="706.8"> <search_result> <search_hit hit_rank="1" peptide="SDEETLSERSCR" peptide_prev_aa="S" peptide_next_aa="S" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1468.610002" massdiff="-1.019684" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="174"> <modification_info modified_peptide="SDEETLSERSCR"> <mod_aminoacid_mass position="11" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.492"/> <search_score name="deltacn" value="0.228"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.0"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="5.11E+000"/> </search_hit> <search_hit hit_rank="2" peptide="SEESSSVHEMTNI" peptide_prev_aa="K" peptide_next_aa="I" protein="XXX_gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="48" calc_neutral_pep_mass="1464.603838" massdiff="2.986480" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="174"> <modification_info modified_peptide="SEESSSVHEM[147]TNI"> <mod_aminoacid_mass position="10" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.380"/> <search_score name="deltacn" value="0.023"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.7"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="1.66E+001"/> </search_hit> <search_hit hit_rank="3" peptide="LSFNPTQLEEQC" peptide_prev_aa="R" peptide_next_aa="H" protein="gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1467.607543" massdiff="-0.017225" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="174"> <modification_info modified_peptide="LSFNPTQ[129]LEEQ[129]C"> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="129.042594"/> <mod_aminoacid_mass position="12" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.371"/> <search_score name="deltacn" value="0.035"/> <search_score name="deltacnstar" value="0.008"/> <search_score name="spscore" value="5.9"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.82E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LSFNPTQLEEQC" peptide_prev_aa="R" peptide_next_aa="H" protein="gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1467.607543" massdiff="-0.017225" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="174"> <modification_info modified_peptide="LSFN[115]PTQLEEQ[129]C"> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="11" mass="129.042594"/> <mod_aminoacid_mass position="12" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.368"/> <search_score name="deltacn" value="0.027"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.9"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.88E+001"/> </search_hit> <search_hit hit_rank="5" peptide="WNEAEQSNPYTK" peptide_prev_aa="I" peptide_next_aa="K" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1467.615405" massdiff="-0.025087" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="174"> <modification_info modified_peptide="WN[115]EAEQSN[115]PYTK"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.358"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.9"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="2.08E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00039.00039.3" spectrumNativeID="sample=1 period=1 cycle=1209 experiment=2" start_scan="39" end_scan="39" precursor_neutral_mass="1353.742104" assumed_charge="3" index="77" retention_time_sec="709.5"> <search_result> <search_hit hit_rank="1" peptide="QTFAVAVDRFAK" peptide_prev_aa="M" peptide_next_aa="E" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="14" num_matched_ions="5" tot_num_ions="44" calc_neutral_pep_mass="1351.724835" massdiff="2.017269" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="450"> <search_score name="xcorr" value="1.088"/> <search_score name="deltacn" value="0.098"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="21.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.05E+000"/> </search_hit> <search_hit hit_rank="2" peptide="QKAMKPWIQPK" peptide_prev_aa="H" peptide_next_aa="T" protein="gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1354.743128" massdiff="-1.001024" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="450"> <modification_info modified_peptide="QKAMKPWIQ[129]PK"> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.982"/> <search_score name="deltacn" value="0.248"/> <search_score name="deltacnstar" value="0.003"/> <search_score name="spscore" value="16.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.08E+000"/> </search_hit> <search_hit hit_rank="3" peptide="QKAMKPWIQPK" peptide_prev_aa="H" peptide_next_aa="T" protein="gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1353.759112" massdiff="-0.017008" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="450"> <search_score name="xcorr" value="0.978"/> <search_score name="deltacn" value="0.245"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="16.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.12E+000"/> </search_hit> <search_hit hit_rank="4" peptide="ALPDKPGSGAAAAAR" peptide_prev_aa="A" peptide_next_aa="K" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1351.720812" massdiff="2.021292" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="450"> <search_score name="xcorr" value="0.739"/> <search_score name="deltacn" value="0.012"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.1"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="9.85E+000"/> </search_hit> <search_hit hit_rank="5" peptide="VPYSELVKKCK" peptide_prev_aa="I" peptide_next_aa="I" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="40" calc_neutral_pep_mass="1350.721724" massdiff="3.020380" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="450"> <modification_info modified_peptide="VPYSELVKKCK"> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.730"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.1"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.04E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00039.00039.2" spectrumNativeID="sample=1 period=1 cycle=1209 experiment=2" start_scan="39" end_scan="39" precursor_neutral_mass="902.494736" assumed_charge="2" index="78" retention_time_sec="709.5"> <search_result> <search_hit hit_rank="1" peptide="DRQSRLK" peptide_prev_aa="A" peptide_next_aa="D" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="12" calc_neutral_pep_mass="902.493379" massdiff="0.001357" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="702"> <modification_info modified_peptide="DRQ[129]SRLK"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.534"/> <search_score name="deltacn" value="0.006"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="16.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.02E+001"/> </search_hit> <search_hit hit_rank="2" peptide="KNLTNWK" peptide_prev_aa="R" peptide_next_aa="V" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="902.497401" massdiff="-0.002665" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="702"> <search_score name="xcorr" value="0.531"/> <search_score name="deltacn" value="0.003"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.8"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="2.07E+001"/> </search_hit> <search_hit hit_rank="3" peptide="SELWQLK" peptide_prev_aa="V" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="902.486168" massdiff="0.008568" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="702"> <search_score name="xcorr" value="0.529"/> <search_score name="deltacn" value="0.035"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.9"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="2.10E+001"/> </search_hit> <search_hit hit_rank="4" peptide="KENASRAK" peptide_prev_aa="P" peptide_next_aa="E" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="902.493379" massdiff="0.001358" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="702"> <search_score name="xcorr" value="0.511"/> <search_score name="deltacn" value="0.032"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="2.43E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QVELASQK" peptide_prev_aa="L" peptide_next_aa="T" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="14" calc_neutral_pep_mass="901.486896" massdiff="1.007840" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="702"> <search_score name="xcorr" value="0.494"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="17"/> <search_score name="expect" value="2.76E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00040.00040.3" spectrumNativeID="sample=1 period=1 cycle=1209 experiment=3" start_scan="40" end_scan="40" precursor_neutral_mass="1709.086685" assumed_charge="3" index="79" retention_time_sec="711.6"> <search_result> <search_hit hit_rank="1" peptide="TGLLLLGARELILVTK" peptide_prev_aa="M" peptide_next_aa="I" protein="gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="60" calc_neutral_pep_mass="1709.081492" massdiff="0.005193" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="12"> <search_score name="xcorr" value="0.245"/> <search_score name="deltacn" value="0.014"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.44E+001"/> </search_hit> <search_hit hit_rank="2" peptide="TVLILERAGLLLLGTK" peptide_prev_aa="M" peptide_next_aa="I" protein="XXX_gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="60" calc_neutral_pep_mass="1709.081492" massdiff="0.005193" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="12"> <search_score name="xcorr" value="0.242"/> <search_score name="deltacn" value="0.072"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.58E+001"/> </search_hit> <search_hit hit_rank="3" peptide="SRAANLIVLSLPVARK" peptide_prev_aa="H" peptide_next_aa="G" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="60" calc_neutral_pep_mass="1707.051923" massdiff="2.034762" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="12"> <search_score name="xcorr" value="0.224"/> <search_score name="deltacn" value="0.473"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="4.45E+001"/> </search_hit> <search_hit hit_rank="4" peptide="RAVPLSLVILNAARSK" peptide_prev_aa="H" peptide_next_aa="G" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="60" calc_neutral_pep_mass="1707.051923" massdiff="2.034762" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="12"> <search_score name="xcorr" value="0.118"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.67E+002"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00040.00040.2" spectrumNativeID="sample=1 period=1 cycle=1209 experiment=3" start_scan="40" end_scan="40" precursor_neutral_mass="1139.391123" assumed_charge="2" index="80" retention_time_sec="711.6"> <search_result> <search_hit hit_rank="1" peptide="DMMSHGESQT" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1137.406659" massdiff="1.984465" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="32"> <modification_info modified_peptide="DM[147]MSHGESQT"> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.117"/> <search_score name="deltacn" value="0.714"/> <search_score name="deltacnstar" value="0.018"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.09E+002"/> </search_hit> <search_hit hit_rank="2" peptide="DMMSHGESQT" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1137.406659" massdiff="1.984465" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="32"> <modification_info modified_peptide="DMM[147]SHGESQT"> <mod_aminoacid_mass position="3" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.115"/> <search_score name="deltacn" value="0.708"/> <search_score name="deltacnstar" value="0.409"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.13E+002"/> </search_hit> <search_hit hit_rank="3" peptide="DMMSHGESQT" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1138.390675" massdiff="1.000449" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="32"> <modification_info modified_peptide="DM[147]MSHGESQ[129]T"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.068"/> <search_score name="deltacn" value="0.507"/> <search_score name="deltacnstar" value="0.031"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.45E+002"/> </search_hit> <search_hit hit_rank="4" peptide="DMMSHGESQT" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1138.390675" massdiff="1.000449" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="32"> <modification_info modified_peptide="DMM[147]SHGESQ[129]T"> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.066"/> <search_score name="deltacn" value="0.491"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.54E+002"/> </search_hit> <search_hit hit_rank="5" peptide="QSEGHSMMDT" peptide_prev_aa="R" peptide_next_aa="L" protein="gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1137.406659" massdiff="1.984465" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="32"> <modification_info modified_peptide="QSEGHSMM[147]DT"> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.034"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.34E+002"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00041.00041.3" spectrumNativeID="sample=1 period=1 cycle=1209 experiment=4" start_scan="41" end_scan="41" precursor_neutral_mass="1440.575201" assumed_charge="3" index="81" retention_time_sec="713.7"> <search_result> <search_hit hit_rank="1" peptide="TMEEMFTQHER" peptide_prev_aa="A" peptide_next_aa="K" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1438.585701" massdiff="1.989500" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="334"> <modification_info modified_peptide="TMEEMFTQ[129]HER"> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.447"/> <search_score name="deltacn" value="0.091"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="6.84E+000"/> </search_hit> <search_hit hit_rank="2" peptide="DSFFQFYATNEA" peptide_prev_aa="K" peptide_next_aa="R" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="44" calc_neutral_pep_mass="1439.588127" massdiff="0.987074" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="334"> <modification_info modified_peptide="DSFFQFYATN[115]EA"> <mod_aminoacid_mass position="10" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.407"/> <search_score name="deltacn" value="0.014"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="17"/> <search_score name="expect" value="1.07E+001"/> </search_hit> <search_hit hit_rank="3" peptide="TFNLHNSSSFGQT" peptide_prev_aa="K" peptide_next_aa="H" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1441.599755" massdiff="-1.024554" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="334"> <modification_info modified_peptide="TFN[115]LHN[115]SSSFGQ[129]T"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="115.026943"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.401"/> <search_score name="deltacn" value="0.018"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.6"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.14E+001"/> </search_hit> <search_hit hit_rank="4" peptide="AMSSSDEETLSER" peptide_prev_aa="W" peptide_next_aa="S" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="48" calc_neutral_pep_mass="1440.603853" massdiff="-0.028652" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="334"> <search_score name="xcorr" value="0.394"/> <search_score name="deltacn" value="0.119"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.1"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.24E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ERPFVCQQCGR" peptide_prev_aa="G" peptide_next_aa="G" protein="gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1439.580952" massdiff="0.994250" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="334"> <modification_info modified_peptide="ERPFVCQ[129]Q[129]CGR"> <mod_aminoacid_mass position="6" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.347"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.0"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="2.09E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00041.00041.2" spectrumNativeID="sample=1 period=1 cycle=1209 experiment=4" start_scan="41" end_scan="41" precursor_neutral_mass="960.383467" assumed_charge="2" index="82" retention_time_sec="713.7"> <search_result> <search_hit hit_rank="1" peptide="TMEEMFR" peptide_prev_aa="T" peptide_next_aa="K" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="12" calc_neutral_pep_mass="958.388824" massdiff="1.994644" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="136"> <modification_info modified_peptide="TM[147]EEMFR"> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.413"/> <search_score name="deltacn" value="0.128"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="22.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="5.20E+000"/> </search_hit> <search_hit hit_rank="2" peptide="YWQISMN" peptide_prev_aa="R" peptide_next_aa="R" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="957.390204" massdiff="2.993263" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="136"> <modification_info modified_peptide="YWQISM[147]N[115]"> <mod_aminoacid_mass position="6" mass="147.035385"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.360"/> <search_score name="deltacn" value="0.099"/> <search_score name="deltacnstar" value="0.002"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="9.67E+000"/> </search_hit> <search_hit hit_rank="3" peptide="YWQISMN" peptide_prev_aa="R" peptide_next_aa="R" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="958.374220" massdiff="2.009247" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="136"> <modification_info modified_peptide="YWQ[129]ISM[147]N[115]"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="147.035385"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.360"/> <search_score name="deltacn" value="0.097"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="9.74E+000"/> </search_hit> <search_hit hit_rank="4" peptide="TMEEMFR" peptide_prev_aa="T" peptide_next_aa="K" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="958.388824" massdiff="1.994644" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="136"> <modification_info modified_peptide="TMEEM[147]FR"> <mod_aminoacid_mass position="5" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.325"/> <search_score name="deltacn" value="0.061"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.47E+001"/> </search_hit> <search_hit hit_rank="5" peptide="PQSGGGEASGGG" peptide_prev_aa="R" peptide_next_aa="E" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="22" calc_neutral_pep_mass="959.394452" massdiff="0.989015" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="136"> <search_score name="xcorr" value="0.305"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="1.86E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00042.00042.3" spectrumNativeID="sample=1 period=1 cycle=1209 experiment=5" start_scan="42" end_scan="42" precursor_neutral_mass="1209.554789" assumed_charge="3" index="83" retention_time_sec="715.8"> <search_result> <search_hit hit_rank="1" peptide="SSLEATRDMVT" peptide_prev_aa="K" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="40" calc_neutral_pep_mass="1208.570702" massdiff="0.984087" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="964"> <search_score name="xcorr" value="0.794"/> <search_score name="deltacn" value="0.169"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.5"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="5.49E+000"/> </search_hit> <search_hit hit_rank="2" peptide="MSAICTNGVVR" peptide_prev_aa="S" peptide_next_aa="G" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="40" calc_neutral_pep_mass="1208.552945" massdiff="1.001845" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="964"> <modification_info modified_peptide="MSAICTN[115]GVVR"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.660"/> <search_score name="deltacn" value="0.005"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.4"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.51E+001"/> </search_hit> <search_hit hit_rank="3" peptide="EVASTTMEKNT" peptide_prev_aa="K" peptide_next_aa="N" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="40" calc_neutral_pep_mass="1210.538734" massdiff="-0.983945" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="964"> <modification_info modified_peptide="EVASTTMEKN[115]T"> <mod_aminoacid_mass position="10" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.657"/> <search_score name="deltacn" value="0.020"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.5"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="1.55E+001"/> </search_hit> <search_hit hit_rank="4" peptide="AEAMKVREME" peptide_prev_aa="-" peptide_next_aa="S" protein="XXX_gi|528968104|ref|XP_005212567.1|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="36" calc_neutral_pep_mass="1208.552929" massdiff="1.001860" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="964"> <modification_info modified_peptide="AEAMKVREM[147]E"> <mod_aminoacid_mass position="9" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.644"/> <search_score name="deltacn" value="0.042"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.5"/> <search_score name="sprank" value="23"/> <search_score name="expect" value="1.71E+001"/> </search_hit> <search_hit hit_rank="5" peptide="PEGSVVMFGGVD" peptide_prev_aa="K" peptide_next_aa="H" protein="gi|119924469|ref|XP_001252524.1|" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1208.538325" massdiff="1.016464" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="964"> <modification_info modified_peptide="PEGSVVM[147]FGGVD"> <mod_aminoacid_mass position="7" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.616"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.0"/> <search_score name="sprank" value="22"/> <search_score name="expect" value="2.10E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00042.00042.2" spectrumNativeID="sample=1 period=1 cycle=1209 experiment=5" start_scan="42" end_scan="42" precursor_neutral_mass="806.369860" assumed_charge="2" index="84" retention_time_sec="715.8"> <search_result> <search_hit hit_rank="1" peptide="QQFQPR" peptide_prev_aa="I" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="10" calc_neutral_pep_mass="805.360634" massdiff="1.009225" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="438"> <modification_info modified_peptide="Q[129]Q[129]FQ[129]PR"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.503"/> <search_score name="deltacn" value="0.015"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="26.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.09E+001"/> </search_hit> <search_hit hit_rank="2" peptide="DKDQDGK" peptide_prev_aa="I" peptide_next_aa="I" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="12" calc_neutral_pep_mass="804.361361" massdiff="2.008498" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="438"> <search_score name="xcorr" value="0.495"/> <search_score name="deltacn" value="0.065"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.9"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.17E+001"/> </search_hit> <search_hit hit_rank="3" peptide="QQFQPR" peptide_prev_aa="I" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="10" calc_neutral_pep_mass="804.376618" massdiff="1.993241" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="438"> <modification_info modified_peptide="Q[129]Q[129]FQPR"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.463"/> <search_score name="deltacn" value="0.096"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="26.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.56E+001"/> </search_hit> <search_hit hit_rank="4" peptide="ENPSLVM" peptide_prev_aa="R" peptide_next_aa="P" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="804.368740" massdiff="2.001119" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="438"> <modification_info modified_peptide="ENPSLVM[147]"> <mod_aminoacid_mass position="7" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.418"/> <search_score name="deltacn" value="0.013"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.1"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="2.33E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QSQQAKN" peptide_prev_aa="K" peptide_next_aa="R" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="804.361362" massdiff="2.008497" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="438"> <modification_info modified_peptide="Q[129]SQQAKN[115]"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.413"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.1"/> <search_score name="sprank" value="20"/> <search_score name="expect" value="2.45E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00043.00043.3" spectrumNativeID="sample=1 period=1 cycle=1210 experiment=2" start_scan="43" end_scan="43" precursor_neutral_mass="1788.845318" assumed_charge="3" index="85" retention_time_sec="718.5"> <search_result> <search_hit hit_rank="1" peptide="EQKWHVVSSKMEER" peptide_prev_aa="L" peptide_next_aa="K" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="52" calc_neutral_pep_mass="1787.862453" massdiff="0.982865" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="976"> <modification_info modified_peptide="EQKWHVVSSKM[147]EER"> <mod_aminoacid_mass position="11" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.875"/> <search_score name="deltacn" value="0.414"/> <search_score name="deltacnstar" value="0.068"/> <search_score name="spscore" value="4.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.95E+000"/> </search_hit> <search_hit hit_rank="2" peptide="EQKWHVVSSKMEER" peptide_prev_aa="L" peptide_next_aa="K" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1788.846469" massdiff="-0.001151" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="976"> <modification_info modified_peptide="EQ[129]KWHVVSSKM[147]EER"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.815"/> <search_score name="deltacn" value="0.371"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.8"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="3.06E+000"/> </search_hit> <search_hit hit_rank="3" peptide="YQKALNEINQFYQK" peptide_prev_aa="H" peptide_next_aa="F" protein="gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1788.857032" massdiff="-0.011714" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="976"> <modification_info modified_peptide="YQ[129]KALNEIN[115]Q[129]FYQK"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="115.026943"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.513"/> <search_score name="deltacn" value="0.010"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="18"/> <search_score name="expect" value="2.98E+001"/> </search_hit> <search_hit hit_rank="4" peptide="YNDSDLINRFIGSWS" peptide_prev_aa="K" peptide_next_aa="P" protein="XXX_gi|528968108|ref|XP_005212569.1|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1785.832213" massdiff="3.013105" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="976"> <search_score name="xcorr" value="0.508"/> <search_score name="deltacn" value="0.015"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="3.10E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QYFQNIENLAKQYK" peptide_prev_aa="H" peptide_next_aa="F" protein="XXX_gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1788.857032" massdiff="-0.011714" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="976"> <modification_info modified_peptide="QYFQ[129]N[115]IEN[115]LAKQYK"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.500"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.9"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="3.27E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00043.00043.2" spectrumNativeID="sample=1 period=1 cycle=1210 experiment=2" start_scan="43" end_scan="43" precursor_neutral_mass="1192.563545" assumed_charge="2" index="86" retention_time_sec="718.5"> <search_result> <search_hit hit_rank="1" peptide="PNTEPTHHFI" peptide_prev_aa="R" peptide_next_aa="H" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1191.567272" massdiff="0.996274" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="978"> <search_score name="xcorr" value="0.457"/> <search_score name="deltacn" value="0.187"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.01E+000"/> </search_hit> <search_hit hit_rank="2" peptide="IVSWGSGCAQK" peptide_prev_aa="G" peptide_next_aa="N" protein="gi|528903801|ref|XP_871686.4|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1192.554659" massdiff="0.008887" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="978"> <modification_info modified_peptide="IVSWGSGCAQK"> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.372"/> <search_score name="deltacn" value="0.014"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.4"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="9.72E+000"/> </search_hit> <search_hit hit_rank="3" peptide="AQEMQQLRDA" peptide_prev_aa="R" peptide_next_aa="Q" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1189.539737" massdiff="3.023809" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="978"> <modification_info modified_peptide="AQ[129]EMQQLRDA"> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.366"/> <search_score name="deltacn" value="0.110"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.4"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.04E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LANGQATTEER" peptide_prev_aa="V" peptide_next_aa="D" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1190.541511" massdiff="2.022034" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="978"> <modification_info modified_peptide="LAN[115]GQ[129]ATTEER"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.326"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.0"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.81E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LANGQATTEER" peptide_prev_aa="V" peptide_next_aa="D" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1189.557495" massdiff="3.006050" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="978"> <modification_info modified_peptide="LAN[115]GQATTEER"> <mod_aminoacid_mass position="3" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.326"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.0"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.83E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00044.00044.2" spectrumNativeID="sample=1 period=1 cycle=1210 experiment=3" start_scan="44" end_scan="44" precursor_neutral_mass="921.417898" assumed_charge="2" index="87" retention_time_sec="720.6"> <search_result> <search_hit hit_rank="1" peptide="AGMEWEAK" peptide_prev_aa="V" peptide_next_aa="A" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="920.406203" massdiff="1.011695" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="560"> <search_score name="xcorr" value="0.514"/> <search_score name="deltacn" value="0.031"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.1"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="9.22E+000"/> </search_hit> <search_hit hit_rank="2" peptide="TSEENSKK" peptide_prev_aa="S" peptide_next_aa="T" protein="gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="14" calc_neutral_pep_mass="922.424356" massdiff="-1.006458" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="560"> <modification_info modified_peptide="TSEEN[115]SKK"> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.498"/> <search_score name="deltacn" value="0.035"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="18.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.08E+001"/> </search_hit> <search_hit hit_rank="3" peptide="ISMNGNVTA" peptide_prev_aa="R" peptide_next_aa="C" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="921.422567" massdiff="-0.004668" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="560"> <modification_info modified_peptide="ISM[147]NGNVTA"> <mod_aminoacid_mass position="3" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.481"/> <search_score name="deltacn" value="0.015"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.2"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="1.27E+001"/> </search_hit> <search_hit hit_rank="4" peptide="KSNEESTK" peptide_prev_aa="S" peptide_next_aa="T" protein="XXX_gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="922.424356" massdiff="-1.006458" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="560"> <modification_info modified_peptide="KSN[115]EESTK"> <mod_aminoacid_mass position="3" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.474"/> <search_score name="deltacn" value="0.155"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.1"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="1.37E+001"/> </search_hit> <search_hit hit_rank="5" peptide="KCVTDWL" peptide_prev_aa="R" peptide_next_aa="S" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="921.426605" massdiff="-0.008706" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="560"> <modification_info modified_peptide="KCVTDWL"> <mod_aminoacid_mass position="2" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.400"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.8"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="2.77E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00044.00044.3" spectrumNativeID="sample=1 period=1 cycle=1210 experiment=3" start_scan="44" end_scan="44" precursor_neutral_mass="1382.126847" assumed_charge="3" index="88" retention_time_sec="720.6"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00045.00045.3" spectrumNativeID="sample=1 period=1 cycle=1210 experiment=4" start_scan="45" end_scan="45" precursor_neutral_mass="1640.306310" assumed_charge="3" index="89" retention_time_sec="722.7"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00045.00045.2" spectrumNativeID="sample=1 period=1 cycle=1210 experiment=4" start_scan="45" end_scan="45" precursor_neutral_mass="1093.537540" assumed_charge="2" index="90" retention_time_sec="722.7"> <search_result> <search_hit hit_rank="1" peptide="MVTSELRNK" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1093.543745" massdiff="-0.006205" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="888"> <modification_info modified_peptide="M[147]VTSELRN[115]K"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.514"/> <search_score name="deltacn" value="0.004"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.01E+001"/> </search_hit> <search_hit hit_rank="2" peptide="AMKQAQQQR" peptide_prev_aa="T" peptide_next_aa="N" protein="gi|528968108|ref|XP_005212569.1|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1090.507709" massdiff="3.029830" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="888"> <modification_info modified_peptide="AMKQ[129]AQ[129]Q[129]QR"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.512"/> <search_score name="deltacn" value="0.084"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="1.04E+001"/> </search_hit> <search_hit hit_rank="3" peptide="EQSVVTSLDL" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1090.539386" massdiff="2.998154" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="888"> <modification_info modified_peptide="EQ[129]SVVTSLDL"> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.469"/> <search_score name="deltacn" value="0.184"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.58E+001"/> </search_hit> <search_hit hit_rank="4" peptide="VNQLSNSLTI" peptide_prev_aa="R" peptide_next_aa="K" protein="XXX_gi|528968108|ref|XP_005212569.1|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1090.539387" massdiff="2.998153" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="888"> <modification_info modified_peptide="VN[115]Q[129]LSN[115]SLTI"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.382"/> <search_score name="deltacn" value="0.023"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.6"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="3.70E+001"/> </search_hit> <search_hit hit_rank="5" peptide="AMGSNMEKVK" peptide_prev_aa="C" peptide_next_aa="K" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1093.526001" massdiff="0.011539" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="888"> <search_score name="xcorr" value="0.374"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="4.03E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00046.00046.3" spectrumNativeID="sample=1 period=1 cycle=1211 experiment=2" start_scan="46" end_scan="46" precursor_neutral_mass="1323.524087" assumed_charge="3" index="91" retention_time_sec="725.3"> <search_result> <search_hit hit_rank="1" peptide="GYQCPEHRCL" peptide_prev_aa="R" peptide_next_aa="M" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="36" calc_neutral_pep_mass="1320.522708" massdiff="3.001380" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="222"> <modification_info modified_peptide="GYQCPEHRCL"> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="9" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.429"/> <search_score name="deltacn" value="0.183"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="9.63E+000"/> </search_hit> <search_hit hit_rank="2" peptide="SIDEMNNAWEN" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="40" calc_neutral_pep_mass="1322.508496" massdiff="1.015591" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="222"> <modification_info modified_peptide="SIDEMN[115]NAWEN"> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.351"/> <search_score name="deltacn" value="0.011"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.4"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="2.29E+001"/> </search_hit> <search_hit hit_rank="3" peptide="EWQSIDIEDDA" peptide_prev_aa="K" peptide_next_aa="S" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="40" calc_neutral_pep_mass="1320.535757" massdiff="2.988331" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="222"> <modification_info modified_peptide="EWQ[129]SIDIEDDA"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.347"/> <search_score name="deltacn" value="0.005"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.6"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="2.38E+001"/> </search_hit> <search_hit hit_rank="4" peptide="SIDEMNNAWEN" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="40" calc_neutral_pep_mass="1322.508496" massdiff="1.015591" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="222"> <modification_info modified_peptide="SIDEMNN[115]AWEN"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.345"/> <search_score name="deltacn" value="0.006"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.4"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="2.43E+001"/> </search_hit> <search_hit hit_rank="5" peptide="CRHEPCQYGL" peptide_prev_aa="R" peptide_next_aa="M" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="36" calc_neutral_pep_mass="1321.506724" massdiff="2.017364" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="222"> <modification_info modified_peptide="CRHEPCQ[129]YGL"> <mod_aminoacid_mass position="1" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.343"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="2.49E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00046.00046.2" spectrumNativeID="sample=1 period=1 cycle=1211 experiment=2" start_scan="46" end_scan="46" precursor_neutral_mass="882.349392" assumed_charge="2" index="92" retention_time_sec="725.3"> <search_result> <search_hit hit_rank="1" peptide="MEELSGTT" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="5" tot_num_ions="14" calc_neutral_pep_mass="882.364049" massdiff="-0.014657" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="372"> <modification_info modified_peptide="M[147]EELSGTT"> <mod_aminoacid_mass position="1" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.881"/> <search_score name="deltacn" value="0.343"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="93.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="MTTSAVEE" peptide_prev_aa="K" peptide_next_aa="K" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="882.364049" massdiff="-0.014657" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="372"> <modification_info modified_peptide="M[147]TTSAVEE"> <mod_aminoacid_mass position="1" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.579"/> <search_score name="deltacn" value="0.121"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.1"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="2.47E+000"/> </search_hit> <search_hit hit_rank="3" peptide="MSQNFHT" peptide_prev_aa="K" peptide_next_aa="S" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="12" calc_neutral_pep_mass="880.338503" massdiff="2.010889" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="372"> <modification_info modified_peptide="M[147]SQN[115]FHT"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.509"/> <search_score name="deltacn" value="0.161"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="37.6"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="5.19E+000"/> </search_hit> <search_hit hit_rank="4" peptide="PSSSTDMGT" peptide_prev_aa="K" peptide_next_aa="K" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="881.343662" massdiff="1.005729" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="372"> <search_score name="xcorr" value="0.427"/> <search_score name="deltacn" value="0.096"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="17.6"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.24E+001"/> </search_hit> <search_hit hit_rank="5" peptide="AQQEMMK" peptide_prev_aa="T" peptide_next_aa="P" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="12" calc_neutral_pep_mass="881.362275" massdiff="0.987117" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="372"> <modification_info modified_peptide="AQ[129]QEMM[147]K"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.386"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="25"/> <search_score name="expect" value="1.91E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00047.00047.2" spectrumNativeID="sample=1 period=1 cycle=1211 experiment=3" start_scan="47" end_scan="47" precursor_neutral_mass="1012.443024" assumed_charge="2" index="93" retention_time_sec="727.5"> <search_result> <search_hit hit_rank="1" peptide="RIHSGEEAD" peptide_prev_aa="K" peptide_next_aa="V" protein="gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="1012.457387" massdiff="-0.014363" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="460"> <search_score name="xcorr" value="0.560"/> <search_score name="deltacn" value="0.184"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="27.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.41E+001"/> </search_hit> <search_hit hit_rank="2" peptide="YQPEQNFS" peptide_prev_aa="R" peptide_next_aa="K" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="1011.429775" massdiff="1.013249" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="460"> <search_score name="xcorr" value="0.457"/> <search_score name="deltacn" value="0.001"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.7"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="2.78E+001"/> </search_hit> <search_hit hit_rank="3" peptide="KAMGSNMEK" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1011.436503" massdiff="1.006521" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="460"> <modification_info modified_peptide="KAMGSN[115]M[147]EK"> <mod_aminoacid_mass position="6" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.456"/> <search_score name="deltacn" value="0.003"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.8"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="2.79E+001"/> </search_hit> <search_hit hit_rank="4" peptide="KEMNSGMAK" peptide_prev_aa="V" peptide_next_aa="K" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="1011.436503" massdiff="1.006521" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="460"> <modification_info modified_peptide="KEMN[115]SGM[147]AK"> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.455"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.2"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.81E+001"/> </search_hit> <search_hit hit_rank="5" peptide="KEMNSGMAK" peptide_prev_aa="V" peptide_next_aa="K" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="1010.452487" massdiff="1.990537" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="460"> <modification_info modified_peptide="KEMNSGM[147]AK"> <mod_aminoacid_mass position="7" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.406"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.2"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.90E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00047.00047.3" spectrumNativeID="sample=1 period=1 cycle=1211 experiment=3" start_scan="47" end_scan="47" precursor_neutral_mass="1518.664536" assumed_charge="3" index="94" retention_time_sec="727.5"> <search_result> <search_hit hit_rank="1" peptide="EKSYQEVPFDSTS" peptide_prev_aa="K" peptide_next_aa="T" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="48" calc_neutral_pep_mass="1515.672919" massdiff="2.991617" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="590"> <search_score name="xcorr" value="0.772"/> <search_score name="deltacn" value="0.183"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.07E+000"/> </search_hit> <search_hit hit_rank="2" peptide="FCALHSASEELQQ" peptide_prev_aa="R" peptide_next_aa="A" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="48" calc_neutral_pep_mass="1519.661309" massdiff="-0.996773" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="590"> <modification_info modified_peptide="FCALHSASEELQQ"> <mod_aminoacid_mass position="2" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.631"/> <search_score name="deltacn" value="0.022"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="6.60E+000"/> </search_hit> <search_hit hit_rank="3" peptide="ANGEGTPGDEQAENK" peptide_prev_aa="V" peptide_next_aa="G" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1516.627760" massdiff="2.036776" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="590"> <modification_info modified_peptide="AN[115]GEGTPGDEQAENK"> <mod_aminoacid_mass position="2" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.617"/> <search_score name="deltacn" value="0.018"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="7.39E+000"/> </search_hit> <search_hit hit_rank="4" peptide="EKSYQEVPFDSTS" peptide_prev_aa="K" peptide_next_aa="T" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="48" calc_neutral_pep_mass="1516.656935" massdiff="2.007601" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="590"> <modification_info modified_peptide="EKSYQ[129]EVPFDSTS"> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.606"/> <search_score name="deltacn" value="0.120"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="8.08E+000"/> </search_hit> <search_hit hit_rank="5" peptide="AGMKQRCGTFGDMG" peptide_prev_aa="-" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1515.626854" massdiff="3.037681" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="590"> <modification_info modified_peptide="AGMKQRCGTFGDMG"> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.533"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="1.47E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00048.00048.2" spectrumNativeID="sample=1 period=1 cycle=1211 experiment=4" start_scan="48" end_scan="48" precursor_neutral_mass="1352.510701" assumed_charge="2" index="95" retention_time_sec="729.6"> <search_result> <search_hit hit_rank="1" peptide="KQYSCCGKCR" peptide_prev_aa="V" peptide_next_aa="E" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1349.505010" massdiff="3.005692" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="76"> <modification_info modified_peptide="KQ[129]YSCCGKCR"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="161.014665"/> <mod_aminoacid_mass position="9" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.407"/> <search_score name="deltacn" value="0.043"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.98E+000"/> </search_hit> <search_hit hit_rank="2" peptide="AETCNAQDADEK" peptide_prev_aa="K" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="22" calc_neutral_pep_mass="1352.503806" massdiff="0.006896" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="76"> <modification_info modified_peptide="AETCNAQ[129]DADEK"> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.389"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="4.91E+000"/> </search_hit> <search_hit hit_rank="3" peptide="AETCNAQDADEK" peptide_prev_aa="K" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="22" calc_neutral_pep_mass="1352.503806" massdiff="0.006896" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="76"> <modification_info modified_peptide="AETCN[115]AQDADEK"> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.389"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="4.91E+000"/> </search_hit> <search_hit hit_rank="4" peptide="AETCNAQDADEK" peptide_prev_aa="K" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="22" calc_neutral_pep_mass="1353.487822" massdiff="-0.977120" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="76"> <modification_info modified_peptide="AETCN[115]AQ[129]DADEK"> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.389"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="4.91E+000"/> </search_hit> <search_hit hit_rank="5" peptide="AETCNAQDADEK" peptide_prev_aa="K" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="22" calc_neutral_pep_mass="1351.519790" massdiff="0.990912" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="76"> <modification_info modified_peptide="AETCNAQDADEK"> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.389"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="4.91E+000"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00048.00048.3" spectrumNativeID="sample=1 period=1 cycle=1211 experiment=4" start_scan="48" end_scan="48" precursor_neutral_mass="2028.766052" assumed_charge="3" index="96" retention_time_sec="729.6"> <search_result> <search_hit hit_rank="1" peptide="INPNNDSWDYALEEEES" peptide_prev_aa="K" peptide_next_aa="A" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="64" calc_neutral_pep_mass="2025.796342" massdiff="2.969710" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="80"> <modification_info modified_peptide="IN[115]PN[115]NDSWDYALEEEES"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="4" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.321"/> <search_score name="deltacn" value="0.161"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.7"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.61E+001"/> </search_hit> <search_hit hit_rank="2" peptide="INPNNDSWDYALEEEES" peptide_prev_aa="K" peptide_next_aa="A" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="64" calc_neutral_pep_mass="2025.796342" massdiff="2.969710" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="80"> <modification_info modified_peptide="IN[115]PNN[115]DSWDYALEEEES"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.321"/> <search_score name="deltacn" value="0.161"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.7"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.61E+001"/> </search_hit> <search_hit hit_rank="3" peptide="RMVNNGHSFNVEYDDSQ" peptide_prev_aa="R" peptide_next_aa="D" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="64" calc_neutral_pep_mass="2029.795951" massdiff="-1.029899" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="80"> <modification_info modified_peptide="RM[147]VN[115]N[115]GHSFN[115]VEYDDSQ"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="10" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.270"/> <search_score name="deltacn" value="0.030"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="4.63E+001"/> </search_hit> <search_hit hit_rank="4" peptide="EEEELAYDWSDNNPNIS" peptide_prev_aa="K" peptide_next_aa="A" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="64" calc_neutral_pep_mass="2026.780358" massdiff="1.985694" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="80"> <modification_info modified_peptide="EEEELAYDWSDN[115]N[115]PN[115]IS"> <mod_aminoacid_mass position="12" mass="115.026943"/> <mod_aminoacid_mass position="13" mass="115.026943"/> <mod_aminoacid_mass position="15" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.262"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="5.06E+001"/> </search_hit> <search_hit hit_rank="5" peptide="EEEELAYDWSDNNPNIS" peptide_prev_aa="K" peptide_next_aa="A" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="64" calc_neutral_pep_mass="2025.796342" massdiff="2.969710" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="80"> <modification_info modified_peptide="EEEELAYDWSDN[115]NPN[115]IS"> <mod_aminoacid_mass position="12" mass="115.026943"/> <mod_aminoacid_mass position="15" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.257"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="5.31E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00049.00049.2" spectrumNativeID="sample=1 period=1 cycle=1211 experiment=5" start_scan="49" end_scan="49" precursor_neutral_mass="994.454933" assumed_charge="2" index="97" retention_time_sec="731.7"> <search_result> <search_hit hit_rank="1" peptide="EVSQKENTG" peptide_prev_aa="R" peptide_next_aa="Q" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="992.429836" massdiff="2.025097" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="662"> <modification_info modified_peptide="EVSQ[129]KEN[115]TG"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.699"/> <search_score name="deltacn" value="0.100"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.3"/> <search_score name="sprank" value="19"/> <search_score name="expect" value="1.04E+001"/> </search_hit> <search_hit hit_rank="2" peptide="KAMGSNMEK" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="995.441603" massdiff="-0.986670" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="662"> <modification_info modified_peptide="KAMGSN[115]MEK"> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.629"/> <search_score name="deltacn" value="0.045"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.7"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="1.64E+001"/> </search_hit> <search_hit hit_rank="3" peptide="ESISSSEQK" peptide_prev_aa="A" peptide_next_aa="H" protein="gi|528953238|ref|XP_005208082.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="994.445485" massdiff="0.009447" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="662"> <modification_info modified_peptide="ESISSSEQ[129]K"> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.601"/> <search_score name="deltacn" value="0.023"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="30"/> <search_score name="expect" value="1.97E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LSTSEENSK" peptide_prev_aa="Q" peptide_next_aa="K" protein="gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="994.445485" massdiff="0.009447" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="662"> <modification_info modified_peptide="LSTSEEN[115]SK"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.587"/> <search_score name="deltacn" value="0.004"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.1"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="2.16E+001"/> </search_hit> <search_hit hit_rank="5" peptide="KEMNSGMAK" peptide_prev_aa="V" peptide_next_aa="K" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="994.457587" massdiff="-0.002654" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="662"> <search_score name="xcorr" value="0.585"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="14.8"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="2.19E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00049.00049.3" spectrumNativeID="sample=1 period=1 cycle=1211 experiment=5" start_scan="49" end_scan="49" precursor_neutral_mass="1491.682399" assumed_charge="3" index="98" retention_time_sec="731.7"> <search_result> <search_hit hit_rank="1" peptide="LQQYMQPNILNQ" peptide_prev_aa="R" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1491.691547" massdiff="-0.009148" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1226"> <modification_info modified_peptide="LQ[129]Q[129]YMQPNILN[115]Q"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.979"/> <search_score name="deltacn" value="0.040"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.1"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="4.14E+000"/> </search_hit> <search_hit hit_rank="2" peptide="HTKCAEVEEELF" peptide_prev_aa="R" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1491.655161" massdiff="0.027238" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1226"> <modification_info modified_peptide="HTKCAEVEEELF"> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.940"/> <search_score name="deltacn" value="0.020"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.3"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="5.37E+000"/> </search_hit> <search_hit hit_rank="3" peptide="LQQYMQPNILNQ" peptide_prev_aa="R" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1491.691547" massdiff="-0.009148" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1226"> <modification_info modified_peptide="LQ[129]Q[129]YMQPNILNQ[129]"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.921"/> <search_score name="deltacn" value="0.116"/> <search_score name="deltacnstar" value="0.091"/> <search_score name="spscore" value="6.1"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="6.07E+000"/> </search_hit> <search_hit hit_rank="4" peptide="LQQYMQPNILNQ" peptide_prev_aa="R" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1491.691547" massdiff="-0.009148" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1226"> <modification_info modified_peptide="LQ[129]Q[129]YMQPN[115]ILNQ"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.838"/> <search_score name="deltacn" value="0.028"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.6"/> <search_score name="sprank" value="21"/> <search_score name="expect" value="1.06E+001"/> </search_hit> <search_hit hit_rank="5" peptide="CQAEDKGACLLPK" peptide_prev_aa="C" peptide_next_aa="I" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1490.674517" massdiff="1.007882" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1226"> <modification_info modified_peptide="CQAEDKGACLLPK"> <mod_aminoacid_mass position="1" mass="161.014665"/> <mod_aminoacid_mass position="9" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.814"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.0"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.23E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00050.00050.2" spectrumNativeID="sample=1 period=1 cycle=1212 experiment=2" start_scan="50" end_scan="50" precursor_neutral_mass="1304.605855" assumed_charge="2" index="99" retention_time_sec="734.3"> <search_result> <search_hit hit_rank="1" peptide="PGGPQASTTFWR" peptide_prev_aa="A" peptide_next_aa="S" protein="gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="22" calc_neutral_pep_mass="1304.614951" massdiff="-0.009095" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="770"> <modification_info modified_peptide="PGGPQ[129]ASTTFWR"> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.414"/> <search_score name="deltacn" value="0.090"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="14.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.23E+001"/> </search_hit> <search_hit hit_rank="2" peptide="QGFGNVGLHSMR" peptide_prev_aa="V" peptide_next_aa="Y" protein="gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="22" calc_neutral_pep_mass="1302.613905" massdiff="1.991951" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="770"> <modification_info modified_peptide="QGFGN[115]VGLHSMR"> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.377"/> <search_score name="deltacn" value="0.001"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.1"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.94E+001"/> </search_hit> <search_hit hit_rank="3" peptide="KVEPKETEGCK" peptide_prev_aa="A" peptide_next_aa="S" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="20" calc_neutral_pep_mass="1304.628218" massdiff="-0.022362" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="770"> <modification_info modified_peptide="KVEPKETEGCK"> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.377"/> <search_score name="deltacn" value="0.046"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="18"/> <search_score name="expect" value="1.95E+001"/> </search_hit> <search_hit hit_rank="4" peptide="RDAAAESYHRE" peptide_prev_aa="R" peptide_next_aa="D" protein="XXX_gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1303.590526" massdiff="1.015329" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="770"> <search_score name="xcorr" value="0.360"/> <search_score name="deltacn" value="0.021"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.7"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="2.41E+001"/> </search_hit> <search_hit hit_rank="5" peptide="EGRSEQWGTPR" peptide_prev_aa="G" peptide_next_aa="H" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1301.611262" massdiff="2.994594" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="770"> <search_score name="xcorr" value="0.352"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.4"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="2.65E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00050.00050.3" spectrumNativeID="sample=1 period=1 cycle=1212 experiment=2" start_scan="50" end_scan="50" precursor_neutral_mass="1956.908783" assumed_charge="3" index="100" retention_time_sec="734.3"> <search_result> <search_hit hit_rank="1" peptide="NARLENSEYVVSCDAVK" peptide_prev_aa="M" peptide_next_aa="T" protein="gi|529012038|ref|XP_005226889.1|" num_tot_proteins="2" num_matched_ions="4" tot_num_ions="64" calc_neutral_pep_mass="1954.894222" massdiff="2.014561" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1452"> <modification_info modified_peptide="N[115]ARLENSEYVVSCDAVK"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="13" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.793"/> <search_score name="deltacn" value="0.115"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.02E+001"/> </search_hit> <search_hit hit_rank="2" peptide="QWHVEDLVPWIEDCK" peptide_prev_aa="Y" peptide_next_aa="A" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1954.877116" massdiff="2.031667" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1452"> <modification_info modified_peptide="Q[129]WHVEDLVPWIEDCK"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="14" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.702"/> <search_score name="deltacn" value="0.225"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.0"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="1.91E+001"/> </search_hit> <search_hit hit_rank="3" peptide="EDIKQMEAESISSSEQK" peptide_prev_aa="M" peptide_next_aa="H" protein="gi|528953238|ref|XP_005208082.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="64" calc_neutral_pep_mass="1954.867718" massdiff="2.041065" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1452"> <modification_info modified_peptide="EDIKQ[129]M[147]EAESISSSEQK"> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.543"/> <search_score name="deltacn" value="0.041"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.2"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="5.67E+001"/> </search_hit> <search_hit hit_rank="4" peptide="AENLQEHQQRRAEFEA" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="60" calc_neutral_pep_mass="1955.908567" massdiff="1.000216" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1452"> <modification_info modified_peptide="AENLQEHQQ[129]RRAEFEA"> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.521"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="17"/> <search_score name="expect" value="6.61E+001"/> </search_hit> <search_hit hit_rank="5" peptide="AENLQEHQQRRAEFEA" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="60" calc_neutral_pep_mass="1955.908567" massdiff="1.000216" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1452"> <modification_info modified_peptide="AENLQEHQ[129]QRRAEFEA"> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.521"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="17"/> <search_score name="expect" value="6.61E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00051.00051.3" spectrumNativeID="sample=1 period=1 cycle=1212 experiment=3" start_scan="51" end_scan="51" precursor_neutral_mass="1728.720217" assumed_charge="3" index="101" retention_time_sec="736.5"> <search_result> <search_hit hit_rank="1" peptide="SGAERFSSSNQPNFTP" peptide_prev_aa="K" peptide_next_aa="I" protein="XXX_gi|119924469|ref|XP_001252524.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="60" calc_neutral_pep_mass="1727.727475" massdiff="0.992742" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="424"> <modification_info modified_peptide="SGAERFSSSN[115]Q[129]PN[115]FTP"> <mod_aminoacid_mass position="10" mass="115.026943"/> <mod_aminoacid_mass position="11" mass="129.042594"/> <mod_aminoacid_mass position="13" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.765"/> <search_score name="deltacn" value="0.013"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.1"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="4.08E+000"/> </search_hit> <search_hit hit_rank="2" peptide="YWQISMNRISMNGN" peptide_prev_aa="R" peptide_next_aa="V" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="52" calc_neutral_pep_mass="1729.755211" massdiff="-1.034994" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="424"> <modification_info modified_peptide="YWQISMNRISM[147]NGN[115]"> <mod_aminoacid_mass position="11" mass="147.035385"/> <mod_aminoacid_mass position="14" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.755"/> <search_score name="deltacn" value="0.064"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.38E+000"/> </search_hit> <search_hit hit_rank="3" peptide="YWQISMNRISMNGN" peptide_prev_aa="R" peptide_next_aa="V" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="52" calc_neutral_pep_mass="1729.755211" massdiff="-1.034994" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="424"> <modification_info modified_peptide="YWQISMNRISM[147]N[115]GN"> <mod_aminoacid_mass position="11" mass="147.035385"/> <mod_aminoacid_mass position="12" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.755"/> <search_score name="deltacn" value="0.063"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.40E+000"/> </search_hit> <search_hit hit_rank="4" peptide="EENTNKEMTTSAVEQ" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1725.736309" massdiff="2.983908" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="424"> <modification_info modified_peptide="EENTNKEM[147]TTSAVEQ"> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.707"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.8"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="6.26E+000"/> </search_hit> <search_hit hit_rank="5" peptide="EENTNKEMTTSAVEQ" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1726.720325" massdiff="1.999892" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="424"> <modification_info modified_peptide="EEN[115]TNKEM[147]TTSAVEQ"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.706"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.3"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="6.33E+000"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00051.00051.2" spectrumNativeID="sample=1 period=1 cycle=1212 experiment=3" start_scan="51" end_scan="51" precursor_neutral_mass="1152.480145" assumed_charge="2" index="102" retention_time_sec="736.5"> <search_result> <search_hit hit_rank="1" peptide="SSSNHLNFTF" peptide_prev_aa="K" peptide_next_aa="G" protein="XXX_gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1153.504003" massdiff="-1.023859" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="300"> <modification_info modified_peptide="SSSN[115]HLNFTF"> <mod_aminoacid_mass position="4" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.498"/> <search_score name="deltacn" value="0.223"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.2"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.66E+000"/> </search_hit> <search_hit hit_rank="2" peptide="SSDTNIQICL" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="18" calc_neutral_pep_mass="1152.485637" massdiff="-0.005492" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="300"> <modification_info modified_peptide="SSDTN[115]IQ[129]ICL"> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.387"/> <search_score name="deltacn" value="0.254"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="9.65E+000"/> </search_hit> <search_hit hit_rank="3" peptide="TCRCLSEPK" peptide_prev_aa="I" peptide_next_aa="L" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1151.495096" massdiff="0.985049" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="300"> <modification_info modified_peptide="TCRCLSEPK"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.289"/> <search_score name="deltacn" value="0.015"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.5"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="3.01E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QDETSESGIDA" peptide_prev_aa="K" peptide_next_aa="M" protein="XXX_gi|528953234|ref|XP_005208080.1|" num_tot_proteins="6" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1150.462592" massdiff="2.017553" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="300"> <search_score name="xcorr" value="0.284"/> <search_score name="deltacn" value="0.034"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.6"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.16E+001"/> </search_hit> <search_hit hit_rank="5" peptide="SSDEETLSER" peptide_prev_aa="S" peptide_next_aa="S" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1151.494226" massdiff="0.985919" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="300"> <search_score name="xcorr" value="0.275"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="3.54E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00052.00052.3" spectrumNativeID="sample=1 period=1 cycle=1212 experiment=4" start_scan="52" end_scan="52" precursor_neutral_mass="1791.896101" assumed_charge="3" index="103" retention_time_sec="738.6"> <search_result> <search_hit hit_rank="1" peptide="IEEHKVFANEVNAHR" peptide_prev_aa="Q" peptide_next_aa="D" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1792.885646" massdiff="-0.989545" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1506"> <modification_info modified_peptide="IEEHKVFAN[115]EVNAHR"> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.743"/> <search_score name="deltacn" value="0.105"/> <search_score name="deltacnstar" value="0.081"/> <search_score name="spscore" value="11.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="7.84E+000"/> </search_hit> <search_hit hit_rank="2" peptide="IEEHKVFANEVNAHR" peptide_prev_aa="Q" peptide_next_aa="D" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1792.885646" massdiff="-0.989545" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1506"> <modification_info modified_peptide="IEEHKVFANEVN[115]AHR"> <mod_aminoacid_mass position="12" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.683"/> <search_score name="deltacn" value="0.026"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.25E+001"/> </search_hit> <search_hit hit_rank="3" peptide="GALGPGQLMAEANRTYK" peptide_prev_aa="D" peptide_next_aa="V" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="64" calc_neutral_pep_mass="1791.893753" massdiff="0.002348" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1506"> <modification_info modified_peptide="GALGPGQLM[147]AEANRTYK"> <mod_aminoacid_mass position="9" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.665"/> <search_score name="deltacn" value="0.109"/> <search_score name="deltacnstar" value="0.105"/> <search_score name="spscore" value="6.5"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.43E+001"/> </search_hit> <search_hit hit_rank="4" peptide="GALGPGQLMAEANRTYK" peptide_prev_aa="D" peptide_next_aa="V" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="64" calc_neutral_pep_mass="1792.877769" massdiff="-0.981668" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1506"> <modification_info modified_peptide="GALGPGQ[129]LM[147]AEANRTYK"> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.595"/> <search_score name="deltacn" value="0.004"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.1"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="2.45E+001"/> </search_hit> <search_hit hit_rank="5" peptide="AQSDPATIEMILNELK" peptide_prev_aa="S" peptide_next_aa="T" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="60" calc_neutral_pep_mass="1788.881517" massdiff="3.014584" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1506"> <modification_info modified_peptide="AQSDPATIEM[147]ILN[115]ELK"> <mod_aminoacid_mass position="10" mass="147.035385"/> <mod_aminoacid_mass position="13" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.593"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="24"/> <search_score name="expect" value="2.50E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00052.00052.2" spectrumNativeID="sample=1 period=1 cycle=1212 experiment=4" start_scan="52" end_scan="52" precursor_neutral_mass="1194.597401" assumed_charge="2" index="104" retention_time_sec="738.6"> <search_result> <search_hit hit_rank="1" peptide="AIESKHTDRH" peptide_prev_aa="R" peptide_next_aa="R" protein="XXX_gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1192.594884" massdiff="2.002517" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="608"> <search_score name="xcorr" value="0.606"/> <search_score name="deltacn" value="0.188"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.4"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.52E+000"/> </search_hit> <search_hit hit_rank="2" peptide="DTHKSEIAHR" peptide_prev_aa="R" peptide_next_aa="F" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1192.594884" massdiff="2.002517" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="608"> <search_score name="xcorr" value="0.492"/> <search_score name="deltacn" value="0.006"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.8"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="5.30E+000"/> </search_hit> <search_hit hit_rank="3" peptide="ANMLKNINTR" peptide_prev_aa="V" peptide_next_aa="L" protein="XXX_gi|119924469|ref|XP_001252524.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1191.591758" massdiff="3.005643" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="608"> <modification_info modified_peptide="AN[115]M[147]LKN[115]INTR"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.489"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="16.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="5.49E+000"/> </search_hit> <search_hit hit_rank="4" peptide="ANMLKNINTR" peptide_prev_aa="V" peptide_next_aa="L" protein="XXX_gi|119924469|ref|XP_001252524.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1192.575774" massdiff="2.021627" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="608"> <modification_info modified_peptide="AN[115]M[147]LKN[115]IN[115]TR"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="6" mass="115.026943"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.488"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="16.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="5.52E+000"/> </search_hit> <search_hit hit_rank="5" peptide="ANMLKNINTR" peptide_prev_aa="V" peptide_next_aa="L" protein="XXX_gi|119924469|ref|XP_001252524.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1191.591758" massdiff="3.005643" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="608"> <modification_info modified_peptide="AN[115]M[147]LKNIN[115]TR"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.488"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="16.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="5.54E+000"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00053.00053.3" spectrumNativeID="sample=1 period=1 cycle=1212 experiment=5" start_scan="53" end_scan="53" precursor_neutral_mass="1750.891744" assumed_charge="3" index="105" retention_time_sec="740.7"> <search_result> <search_hit hit_rank="1" peptide="QSLFKLQNGTQDLEK" peptide_prev_aa="I" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1748.894480" massdiff="1.997264" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1954"> <modification_info modified_peptide="QSLFKLQNGTQ[129]DLEK"> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.997"/> <search_score name="deltacn" value="0.123"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="26"/> <search_score name="expect" value="7.76E+000"/> </search_hit> <search_hit hit_rank="2" peptide="SASIFQENGEVVNINK" peptide_prev_aa="D" peptide_next_aa="S" protein="XXX_gi|528903801|ref|XP_871686.4|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="60" calc_neutral_pep_mass="1747.874078" massdiff="3.017665" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1954"> <search_score name="xcorr" value="0.875"/> <search_score name="deltacn" value="0.013"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.2"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="1.72E+001"/> </search_hit> <search_hit hit_rank="3" peptide="SESSAAGGQGSSRRGLNK" peptide_prev_aa="T" peptide_next_aa="P" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="68" calc_neutral_pep_mass="1747.856137" massdiff="3.035607" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1954"> <search_score name="xcorr" value="0.863"/> <search_score name="deltacn" value="0.058"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="25"/> <search_score name="expect" value="1.85E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QSLFKLQNGTQDLEK" peptide_prev_aa="I" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1748.894480" massdiff="1.997264" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1954"> <modification_info modified_peptide="QSLFKLQN[115]GTQDLEK"> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.813"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="26"/> <search_score name="expect" value="2.56E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QSLFKLQNGTQDLEK" peptide_prev_aa="I" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1749.878496" massdiff="1.013248" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1954"> <modification_info modified_peptide="QSLFKLQ[129]NGTQ[129]DLEK"> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.780"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="26"/> <search_score name="expect" value="3.16E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00053.00053.2" spectrumNativeID="sample=1 period=1 cycle=1212 experiment=5" start_scan="53" end_scan="53" precursor_neutral_mass="1167.261162" assumed_charge="2" index="106" retention_time_sec="740.7"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00054.00054.2" spectrumNativeID="sample=1 period=1 cycle=1213 experiment=2" start_scan="54" end_scan="54" precursor_neutral_mass="993.379707" assumed_charge="2" index="107" retention_time_sec="743.3"> <search_result> <search_hit hit_rank="1" peptide="GMMVYSYQ" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="993.393575" massdiff="-0.013867" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="216"> <modification_info modified_peptide="GM[147]MVYSYQ"> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.530"/> <search_score name="deltacn" value="0.228"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.54E+000"/> </search_hit> <search_hit hit_rank="2" peptide="SEDNPMNQG" peptide_prev_aa="D" peptide_next_aa="-" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="991.355290" massdiff="2.024417" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="216"> <modification_info modified_peptide="SEDNPMNQ[129]G"> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.409"/> <search_score name="deltacn" value="0.034"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="6.21E+000"/> </search_hit> <search_hit hit_rank="3" peptide="TYHDLCEG" peptide_prev_aa="K" peptide_next_aa="S" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="994.370212" massdiff="-0.990505" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="216"> <modification_info modified_peptide="TYHDLCEG"> <mod_aminoacid_mass position="6" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.396"/> <search_score name="deltacn" value="0.011"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.0"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="7.29E+000"/> </search_hit> <search_hit hit_rank="4" peptide="DLTEIQCD" peptide_prev_aa="K" peptide_next_aa="M" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="993.396093" massdiff="-0.016385" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="216"> <modification_info modified_peptide="DLTEIQCD"> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.391"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.9"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="7.68E+000"/> </search_hit> <search_hit hit_rank="5" peptide="DLTEIQCD" peptide_prev_aa="K" peptide_next_aa="M" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="994.380109" massdiff="-1.000401" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="216"> <modification_info modified_peptide="DLTEIQ[129]CD"> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.323"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.1"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.69E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00054.00054.3" spectrumNativeID="sample=1 period=1 cycle=1213 experiment=2" start_scan="54" end_scan="54" precursor_neutral_mass="1490.069561" assumed_charge="3" index="108" retention_time_sec="743.3"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00055.00055.2" spectrumNativeID="sample=1 period=1 cycle=1213 experiment=3" start_scan="55" end_scan="55" precursor_neutral_mass="1092.535424" assumed_charge="2" index="109" retention_time_sec="745.5"> <search_result> <search_hit hit_rank="1" peptide="AEQYLKEGR" peptide_prev_aa="N" peptide_next_aa="K" protein="XXX_gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1093.540389" massdiff="-1.004965" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1050"> <modification_info modified_peptide="AEQ[129]YLKEGR"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.781"/> <search_score name="deltacn" value="0.033"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="18.9"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.52E+001"/> </search_hit> <search_hit hit_rank="2" peptide="PQASTTFWR" peptide_prev_aa="G" peptide_next_aa="S" protein="gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="1092.535243" massdiff="0.000180" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1050"> <search_score name="xcorr" value="0.755"/> <search_score name="deltacn" value="0.019"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="39.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.78E+001"/> </search_hit> <search_hit hit_rank="3" peptide="IVGYLDEEGV" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1092.533906" massdiff="0.001518" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1050"> <search_score name="xcorr" value="0.741"/> <search_score name="deltacn" value="0.102"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="31.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.94E+001"/> </search_hit> <search_hit hit_rank="4" peptide="AEQYLKEGR" peptide_prev_aa="N" peptide_next_aa="K" protein="XXX_gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1092.556373" massdiff="-0.020949" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1050"> <search_score name="xcorr" value="0.665"/> <search_score name="deltacn" value="0.013"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="18.9"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="3.08E+001"/> </search_hit> <search_hit hit_rank="5" peptide="IIVSNDQFR" peptide_prev_aa="G" peptide_next_aa="D" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1092.545140" massdiff="-0.009717" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1050"> <modification_info modified_peptide="IIVSN[115]DQ[129]FR"> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.657"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="13.0"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="3.25E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00055.00055.3" spectrumNativeID="sample=1 period=1 cycle=1213 experiment=3" start_scan="55" end_scan="55" precursor_neutral_mass="1638.803135" assumed_charge="3" index="110" retention_time_sec="745.5"> <search_result> <search_hit hit_rank="1" peptide="NEQYKLVSDTVGQR" peptide_prev_aa="A" peptide_next_aa="V" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="5" tot_num_ions="52" calc_neutral_pep_mass="1638.773697" massdiff="0.029439" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1262"> <modification_info modified_peptide="N[115]EQ[129]YKLVSDTVGQ[129]R"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="13" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="1.030"/> <search_score name="deltacn" value="0.064"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="25.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.68E+001"/> </search_hit> <search_hit hit_rank="2" peptide="GQHGALAREAQGVWR" peptide_prev_aa="S" peptide_next_aa="A" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1635.822986" massdiff="2.980149" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1262"> <modification_info modified_peptide="GQHGALAREAQ[129]GVWR"> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.964"/> <search_score name="deltacn" value="0.071"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.3"/> <search_score name="sprank" value="17"/> <search_score name="expect" value="2.32E+001"/> </search_hit> <search_hit hit_rank="3" peptide="WVGQAERALAGHQGR" peptide_prev_aa="S" peptide_next_aa="A" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1635.822986" massdiff="2.980149" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1262"> <modification_info modified_peptide="WVGQAERALAGHQ[129]GR"> <mod_aminoacid_mass position="13" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.895"/> <search_score name="deltacn" value="0.010"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="17.8"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="3.27E+001"/> </search_hit> <search_hit hit_rank="4" peptide="NDVLAHQATVETVNK" peptide_prev_aa="K" peptide_next_aa="A" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="5" tot_num_ions="56" calc_neutral_pep_mass="1639.805331" massdiff="-1.002195" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="1262"> <modification_info modified_peptide="NDVLAHQ[129]ATVETVN[115]K"> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="14" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.886"/> <search_score name="deltacn" value="0.011"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="17.1"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="3.42E+001"/> </search_hit> <search_hit hit_rank="5" peptide="WVGQAERALAGHQGR" peptide_prev_aa="S" peptide_next_aa="A" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1636.807002" massdiff="1.996133" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1262"> <modification_info modified_peptide="WVGQ[129]AERALAGHQ[129]GR"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="13" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.876"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.7"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="3.60E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00056.00056.3" spectrumNativeID="sample=1 period=1 cycle=1213 experiment=4" start_scan="56" end_scan="56" precursor_neutral_mass="1237.999185" assumed_charge="3" index="111" retention_time_sec="747.6"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00056.00056.2" spectrumNativeID="sample=1 period=1 cycle=1213 experiment=4" start_scan="56" end_scan="56" precursor_neutral_mass="825.332790" assumed_charge="2" index="112" retention_time_sec="747.6"> <search_result> <search_hit hit_rank="1" peptide="MMEQQK" peptide_prev_aa="A" peptide_next_aa="P" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="10" calc_neutral_pep_mass="825.336045" massdiff="-0.003255" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="208"> <modification_info modified_peptide="M[147]M[147]EQQK"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.303"/> <search_score name="deltacn" value="0.173"/> <search_score name="deltacnstar" value="0.005"/> <search_score name="spscore" value="2.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.12E+001"/> </search_hit> <search_hit hit_rank="2" peptide="MMEQQK" peptide_prev_aa="A" peptide_next_aa="P" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="10" calc_neutral_pep_mass="826.320061" massdiff="-0.987271" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="208"> <modification_info modified_peptide="M[147]M[147]EQ[129]QK"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.302"/> <search_score name="deltacn" value="0.169"/> <search_score name="deltacnstar" value="0.005"/> <search_score name="spscore" value="2.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.14E+001"/> </search_hit> <search_hit hit_rank="3" peptide="MMEQQK" peptide_prev_aa="A" peptide_next_aa="P" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="10" calc_neutral_pep_mass="826.320061" massdiff="-0.987271" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="208"> <modification_info modified_peptide="M[147]M[147]EQQ[129]K"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.300"/> <search_score name="deltacn" value="0.165"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.17E+001"/> </search_hit> <search_hit hit_rank="4" peptide="ASEAECR" peptide_prev_aa="E" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="12" calc_neutral_pep_mass="822.317783" massdiff="3.015007" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="208"> <modification_info modified_peptide="ASEAECR"> <mod_aminoacid_mass position="6" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.251"/> <search_score name="deltacn" value="0.176"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="2.41E+001"/> </search_hit> <search_hit hit_rank="5" peptide="MVASELC" peptide_prev_aa="T" peptide_next_aa="-" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="12" calc_neutral_pep_mass="825.324827" massdiff="0.007963" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="208"> <modification_info modified_peptide="M[147]VASELC"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.207"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="4.58E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00057.00057.3" spectrumNativeID="sample=1 period=1 cycle=1213 experiment=5" start_scan="57" end_scan="57" precursor_neutral_mass="1722.883584" assumed_charge="3" index="113" retention_time_sec="749.7"> <search_result> <search_hit hit_rank="1" peptide="QQDPPIGEKEQIKGR" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|329665078|ref|NP_001193236.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1723.874079" massdiff="-0.990495" num_tol_term="2" num_missed_cleavages="2" num_matched_peptides="1964"> <modification_info modified_peptide="QQ[129]DPPIGEKEQ[129]IKGR"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.651"/> <search_score name="deltacn" value="0.045"/> <search_score name="deltacnstar" value="0.017"/> <search_score name="spscore" value="9.6"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.62E+001"/> </search_hit> <search_hit hit_rank="2" peptide="QQDPPIGEKDQIKAR" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528918160|ref|XP_005195085.1|" num_tot_proteins="26" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1723.874079" massdiff="-0.990495" num_tol_term="2" num_missed_cleavages="2" num_matched_peptides="1964"> <modification_info modified_peptide="QQ[129]DPPIGEKDQ[129]IKAR"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.640"/> <search_score name="deltacn" value="0.029"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.6"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.82E+001"/> </search_hit> <search_hit hit_rank="3" peptide="KQEHLPLNWPLTDK" peptide_prev_aa="G" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="52" calc_neutral_pep_mass="1719.883187" massdiff="3.000397" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1964"> <modification_info modified_peptide="KQ[129]EHLPLN[115]WPLTDK"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.621"/> <search_score name="deltacn" value="0.056"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.21E+001"/> </search_hit> <search_hit hit_rank="4" peptide="GGNLVTGTQRFQEALQ" peptide_prev_aa="R" peptide_next_aa="D" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="60" calc_neutral_pep_mass="1719.842779" massdiff="3.040806" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1964"> <modification_info modified_peptide="GGN[115]LVTGTQ[129]RFQEALQ"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.587"/> <search_score name="deltacn" value="0.024"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.3"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="4.09E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LLAPLAEPSSGGQHMSK" peptide_prev_aa="E" peptide_next_aa="R" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="64" calc_neutral_pep_mass="1722.861071" massdiff="0.022513" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1964"> <modification_info modified_peptide="LLAPLAEPSSGGQ[129]HMSK"> <mod_aminoacid_mass position="13" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.573"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.2"/> <search_score name="sprank" value="19"/> <search_score name="expect" value="4.51E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00057.00057.2" spectrumNativeID="sample=1 period=1 cycle=1213 experiment=5" start_scan="57" end_scan="57" precursor_neutral_mass="1148.589056" assumed_charge="2" index="114" retention_time_sec="749.7"> <search_result> <search_hit hit_rank="1" peptide="TTSTPFWLTP" peptide_prev_aa="K" peptide_next_aa="T" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1149.570626" massdiff="-0.981570" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="720"> <search_score name="xcorr" value="0.371"/> <search_score name="deltacn" value="0.077"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.7"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="1.07E+001"/> </search_hit> <search_hit hit_rank="2" peptide="EGSGTVFGRLQ" peptide_prev_aa="R" peptide_next_aa="L" protein="gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1149.577836" massdiff="-0.988780" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="720"> <search_score name="xcorr" value="0.343"/> <search_score name="deltacn" value="0.010"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.8"/> <search_score name="sprank" value="20"/> <search_score name="expect" value="1.52E+001"/> </search_hit> <search_hit hit_rank="3" peptide="VIAQLETRQS" peptide_prev_aa="R" peptide_next_aa="E" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1145.592819" massdiff="2.996238" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="720"> <modification_info modified_peptide="VIAQ[129]LETRQ[129]S"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.339"/> <search_score name="deltacn" value="0.014"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.9"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="1.58E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QALIVTQTMK" peptide_prev_aa="A" peptide_next_aa="G" protein="gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1149.595112" massdiff="-1.006056" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="720"> <modification_info modified_peptide="Q[129]ALIVTQ[129]TM[147]K"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.334"/> <search_score name="deltacn" value="0.011"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="25"/> <search_score name="expect" value="1.68E+001"/> </search_hit> <search_hit hit_rank="5" peptide="GVWAYVIGQR" peptide_prev_aa="N" peptide_next_aa="A" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1148.597844" massdiff="-0.008788" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="720"> <modification_info modified_peptide="GVWAYVIGQ[129]R"> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.331"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.5"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="1.75E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00058.00058.2" spectrumNativeID="sample=1 period=1 cycle=1214 experiment=2" start_scan="58" end_scan="58" precursor_neutral_mass="1018.402171" assumed_charge="2" index="115" retention_time_sec="752.3"> <search_result> <search_hit hit_rank="1" peptide="FSHGNNVMN" peptide_prev_aa="R" peptide_next_aa="V" protein="XXX_gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1019.413080" massdiff="-1.010909" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="142"> <modification_info modified_peptide="FSHGN[115]NVMN"> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.523"/> <search_score name="deltacn" value="0.046"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.29E+000"/> </search_hit> <search_hit hit_rank="2" peptide="QFYATNEF" peptide_prev_aa="K" peptide_next_aa="F" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="1019.423628" massdiff="-1.021457" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="142"> <modification_info modified_peptide="Q[129]FYATNEF"> <mod_aminoacid_mass position="1" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.499"/> <search_score name="deltacn" value="0.114"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.94E+000"/> </search_hit> <search_hit hit_rank="3" peptide="FSHGNNVMN" peptide_prev_aa="R" peptide_next_aa="V" protein="XXX_gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1019.413080" massdiff="-1.010909" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="142"> <modification_info modified_peptide="FSHGNN[115]VMN"> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.442"/> <search_score name="deltacn" value="0.326"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="5.35E+000"/> </search_hit> <search_hit hit_rank="4" peptide="EDTGSHICT" peptide_prev_aa="R" peptide_next_aa="E" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1019.386590" massdiff="-0.984420" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="142"> <modification_info modified_peptide="EDTGSHICT"> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.298"/> <search_score name="deltacn" value="0.003"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.4"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="2.41E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QFYATNEF" peptide_prev_aa="K" peptide_next_aa="F" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="1019.423628" massdiff="-1.021457" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="142"> <modification_info modified_peptide="QFYATN[115]EF"> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.297"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="2.44E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00058.00058.3" spectrumNativeID="sample=1 period=1 cycle=1214 experiment=2" start_scan="58" end_scan="58" precursor_neutral_mass="1527.603256" assumed_charge="3" index="116" retention_time_sec="752.3"> <search_result> <search_hit hit_rank="1" peptide="SHSMAGGSRMMTDK" peptide_prev_aa="E" peptide_next_aa="E" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1526.627553" massdiff="0.975703" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="248"> <modification_info modified_peptide="SHSMAGGSRM[147]M[147]TDK"> <mod_aminoacid_mass position="10" mass="147.035385"/> <mod_aminoacid_mass position="11" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.651"/> <search_score name="deltacn" value="0.131"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.8"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.77E+000"/> </search_hit> <search_hit hit_rank="2" peptide="GRSCATVNGNMSIC" peptide_prev_aa="R" peptide_next_aa="Q" protein="XXX_gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1528.595615" massdiff="-0.992359" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="248"> <modification_info modified_peptide="GRSCATVNGN[115]MSIC"> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="10" mass="115.026943"/> <mod_aminoacid_mass position="14" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.566"/> <search_score name="deltacn" value="0.011"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="3.85E+000"/> </search_hit> <search_hit hit_rank="3" peptide="ADLAKYICDNQDT" peptide_prev_aa="R" peptide_next_aa="I" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="48" calc_neutral_pep_mass="1528.623921" massdiff="-1.020665" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="248"> <modification_info modified_peptide="ADLAKYICDN[115]Q[129]DT"> <mod_aminoacid_mass position="8" mass="161.014665"/> <mod_aminoacid_mass position="10" mass="115.026943"/> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.560"/> <search_score name="deltacn" value="0.016"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.08E+000"/> </search_hit> <search_hit hit_rank="4" peptide="SHSMAGGSRMMTDK" peptide_prev_aa="E" peptide_next_aa="E" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="52" calc_neutral_pep_mass="1526.627553" massdiff="0.975703" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="248"> <modification_info modified_peptide="SHSM[147]AGGSRMM[147]TDK"> <mod_aminoacid_mass position="4" mass="147.035385"/> <mod_aminoacid_mass position="11" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.550"/> <search_score name="deltacn" value="0.007"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.1"/> <search_score name="sprank" value="25"/> <search_score name="expect" value="4.43E+000"/> </search_hit> <search_hit hit_rank="5" peptide="GRSCATVNGNMSIC" peptide_prev_aa="R" peptide_next_aa="Q" protein="XXX_gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1528.595615" massdiff="-0.992359" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="248"> <modification_info modified_peptide="GRSCATVN[115]GNMSIC"> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="115.026943"/> <mod_aminoacid_mass position="14" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.547"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="4.58E+000"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00059.00059.2" spectrumNativeID="sample=1 period=1 cycle=1214 experiment=3" start_scan="59" end_scan="59" precursor_neutral_mass="984.394939" assumed_charge="2" index="117" retention_time_sec="754.4"> <search_result> <search_hit hit_rank="1" peptide="PMCKGQTF" peptide_prev_aa="K" peptide_next_aa="F" protein="XXX_gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="985.388490" massdiff="-0.993552" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="252"> <modification_info modified_peptide="PM[147]CKGQ[129]TF"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.369"/> <search_score name="deltacn" value="0.195"/> <search_score name="deltacnstar" value="0.164"/> <search_score name="spscore" value="4.6"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="6.58E+000"/> </search_hit> <search_hit hit_rank="2" peptide="PMCKGQTF" peptide_prev_aa="K" peptide_next_aa="F" protein="XXX_gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="984.404474" massdiff="-0.009536" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="252"> <modification_info modified_peptide="PM[147]CKGQTF"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="3" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.308"/> <search_score name="deltacn" value="0.038"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.6"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.42E+001"/> </search_hit> <search_hit hit_rank="3" peptide="TFNPQNSSS" peptide_prev_aa="K" peptide_next_aa="F" protein="gi|119924469|ref|XP_001252524.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="981.403955" massdiff="2.990984" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="252"> <modification_info modified_peptide="TFNPQN[115]SSS"> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.297"/> <search_score name="deltacn" value="0.207"/> <search_score name="deltacnstar" value="0.002"/> <search_score name="spscore" value="6.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.65E+001"/> </search_hit> <search_hit hit_rank="4" peptide="TFNPQNSSS" peptide_prev_aa="K" peptide_next_aa="F" protein="gi|119924469|ref|XP_001252524.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="982.387971" massdiff="2.006968" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="252"> <modification_info modified_peptide="TFNPQ[129]N[115]SSS"> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.296"/> <search_score name="deltacn" value="0.205"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.66E+001"/> </search_hit> <search_hit hit_rank="5" peptide="MMEQQATK" peptide_prev_aa="T" peptide_next_aa="P" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="14" calc_neutral_pep_mass="983.393970" massdiff="1.000969" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="252"> <modification_info modified_peptide="MM[147]EQ[129]Q[129]ATK"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.235"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="3.60E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00059.00059.3" spectrumNativeID="sample=1 period=1 cycle=1214 experiment=3" start_scan="59" end_scan="59" precursor_neutral_mass="1476.592408" assumed_charge="3" index="118" retention_time_sec="754.4"> <search_result> <search_hit hit_rank="1" peptide="SGLDGTMWDYDAK" peptide_prev_aa="L" peptide_next_aa="A" protein="XXX_gi|528968108|ref|XP_005212569.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="48" calc_neutral_pep_mass="1473.608195" massdiff="2.984213" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="198"> <modification_info modified_peptide="SGLDGTM[147]WDYDAK"> <mod_aminoacid_mass position="7" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.453"/> <search_score name="deltacn" value="0.165"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="7.19E+000"/> </search_hit> <search_hit hit_rank="2" peptide="PQSGGGEASGGGEAGQAG" peptide_prev_aa="R" peptide_next_aa="P" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="68" calc_neutral_pep_mass="1474.580810" massdiff="2.011598" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="198"> <modification_info modified_peptide="PQ[129]SGGGEASGGGEAGQ[129]AG"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="16" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.378"/> <search_score name="deltacn" value="0.015"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.2"/> <search_score name="sprank" value="19"/> <search_score name="expect" value="1.61E+001"/> </search_hit> <search_hit hit_rank="3" peptide="DMVTQFMETADST" peptide_prev_aa="R" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="48" calc_neutral_pep_mass="1474.595596" massdiff="1.996812" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="198"> <search_score name="xcorr" value="0.372"/> <search_score name="deltacn" value="0.119"/> <search_score name="deltacnstar" value="0.015"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.71E+001"/> </search_hit> <search_hit hit_rank="4" peptide="DMVTQFMETADST" peptide_prev_aa="R" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="48" calc_neutral_pep_mass="1475.579612" massdiff="1.012796" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="198"> <modification_info modified_peptide="DMVTQ[129]FMETADST"> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.367"/> <search_score name="deltacn" value="0.106"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.82E+001"/> </search_hit> <search_hit hit_rank="5" peptide="DEMNNAWENLNK" peptide_prev_aa="I" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="44" calc_neutral_pep_mass="1477.614358" massdiff="-1.021950" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="198"> <modification_info modified_peptide="DEMNNAWEN[115]LNK"> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.328"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="2.76E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00060.00060.3" spectrumNativeID="sample=1 period=1 cycle=1214 experiment=4" start_scan="60" end_scan="60" precursor_neutral_mass="1634.640815" assumed_charge="3" index="119" retention_time_sec="756.5"> <search_result> <search_hit hit_rank="1" peptide="QSFGLSQEEYGFDGA" peptide_prev_aa="K" peptide_next_aa="P" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1635.657663" massdiff="-1.016848" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="96"> <modification_info modified_peptide="Q[129]SFGLSQ[129]EEYGFDGA"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.988"/> <search_score name="deltacn" value="0.004"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.9"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="TSPYSSNDGTSDFEK" peptide_prev_aa="L" peptide_next_aa="P" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1634.658391" massdiff="-0.017576" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="96"> <modification_info modified_peptide="TSPYSSN[115]DGTSDFEK"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.985"/> <search_score name="deltacn" value="0.327"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="3" peptide="EFDSTGDNSSYPSTK" peptide_prev_aa="L" peptide_next_aa="P" protein="XXX_gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1634.658391" massdiff="-0.017576" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="96"> <modification_info modified_peptide="EFDSTGDN[115]SSYPSTK"> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.662"/> <search_score name="deltacn" value="0.003"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.7"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="8.41E+000"/> </search_hit> <search_hit hit_rank="4" peptide="YFTSDSGSVSGENER" peptide_prev_aa="L" peptide_next_aa="Q" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1634.669625" massdiff="-0.028810" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="96"> <modification_info modified_peptide="YFTSDSGSVSGEN[115]ER"> <mod_aminoacid_mass position="13" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.660"/> <search_score name="deltacn" value="0.219"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.0"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="8.52E+000"/> </search_hit> <search_hit hit_rank="5" peptide="SFDYGLGCAASGNCR" peptide_prev_aa="N" peptide_next_aa="C" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1635.629358" massdiff="-0.988543" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="96"> <modification_info modified_peptide="SFDYGLGCAASGNCR"> <mod_aminoacid_mass position="8" mass="161.014665"/> <mod_aminoacid_mass position="14" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.516"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.1"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="2.31E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00060.00060.2" spectrumNativeID="sample=1 period=1 cycle=1214 experiment=4" start_scan="60" end_scan="60" precursor_neutral_mass="1089.760543" assumed_charge="2" index="120" retention_time_sec="756.5"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00061.00061.2" spectrumNativeID="sample=1 period=1 cycle=1214 experiment=5" start_scan="61" end_scan="61" precursor_neutral_mass="1037.303554" assumed_charge="2" index="121" retention_time_sec="758.6"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00061.00061.3" spectrumNativeID="sample=1 period=1 cycle=1214 experiment=5" start_scan="61" end_scan="61" precursor_neutral_mass="1555.955330" assumed_charge="3" index="122" retention_time_sec="758.6"> <search_result> <search_hit hit_rank="1" peptide="KGDLVRSPTLSLLR" peptide_prev_aa="S" peptide_next_aa="I" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1553.925326" massdiff="2.030004" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="36"> <search_score name="xcorr" value="0.453"/> <search_score name="deltacn" value="0.092"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="7.64E+000"/> </search_hit> <search_hit hit_rank="2" peptide="ALVLIDELQKQRK" peptide_prev_aa="A" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="48" calc_neutral_pep_mass="1552.930077" massdiff="3.025253" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="36"> <search_score name="xcorr" value="0.411"/> <search_score name="deltacn" value="0.018"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.19E+001"/> </search_hit> <search_hit hit_rank="3" peptide="RQKQLEDILVLAK" peptide_prev_aa="A" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="48" calc_neutral_pep_mass="1552.930077" massdiff="3.025253" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="36"> <search_score name="xcorr" value="0.404"/> <search_score name="deltacn" value="0.066"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.28E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LAQIKNLFLRVDK" peptide_prev_aa="E" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="48" calc_neutral_pep_mass="1556.940248" massdiff="-0.984917" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="36"> <search_score name="xcorr" value="0.377"/> <search_score name="deltacn" value="0.046"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.71E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LSVMGGALQKVPLLK" peptide_prev_aa="K" peptide_next_aa="S" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="56" calc_neutral_pep_mass="1552.937471" massdiff="3.017860" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="36"> <search_score name="xcorr" value="0.360"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="2.05E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00062.00062.2" spectrumNativeID="sample=1 period=1 cycle=1215 experiment=2" start_scan="62" end_scan="62" precursor_neutral_mass="1209.606506" assumed_charge="2" index="123" retention_time_sec="761.3"> <search_result> <search_hit hit_rank="1" peptide="ARHQELLSQQ" peptide_prev_aa="K" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1210.594216" massdiff="-0.987710" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="832"> <modification_info modified_peptide="ARHQ[129]ELLSQ[129]Q"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.650"/> <search_score name="deltacn" value="0.219"/> <search_score name="deltacnstar" value="0.039"/> <search_score name="spscore" value="7.5"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="4.90E+000"/> </search_hit> <search_hit hit_rank="2" peptide="ARHQELLSQQ" peptide_prev_aa="K" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1209.610200" massdiff="-0.003694" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="832"> <modification_info modified_peptide="ARHQELLSQ[129]Q"> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.625"/> <search_score name="deltacn" value="0.188"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.5"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="6.13E+000"/> </search_hit> <search_hit hit_rank="3" peptide="QIHKQEVSNK" peptide_prev_aa="P" peptide_next_aa="E" protein="XXX_gi|528953236|ref|XP_005208081.1|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1210.630601" massdiff="-1.024095" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="832"> <modification_info modified_peptide="Q[129]IHKQEVSNK"> <mod_aminoacid_mass position="1" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.508"/> <search_score name="deltacn" value="0.036"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.6"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.73E+001"/> </search_hit> <search_hit hit_rank="4" peptide="TGTRVMAIMSAG" peptide_prev_aa="R" peptide_next_aa="N" protein="gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="22" calc_neutral_pep_mass="1209.584564" massdiff="0.021942" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="832"> <modification_info modified_peptide="TGTRVM[147]AIMSAG"> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.489"/> <search_score name="deltacn" value="0.024"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.0"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.03E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ARHQELLSQQ" peptide_prev_aa="K" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1210.594216" massdiff="-0.987710" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="832"> <modification_info modified_peptide="ARHQ[129]ELLSQQ[129]"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.478"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="19"/> <search_score name="expect" value="2.25E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00062.00062.3" spectrumNativeID="sample=1 period=1 cycle=1215 experiment=2" start_scan="62" end_scan="62" precursor_neutral_mass="1814.409759" assumed_charge="3" index="124" retention_time_sec="761.3"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00063.00063.3" spectrumNativeID="sample=1 period=1 cycle=1215 experiment=3" start_scan="63" end_scan="63" precursor_neutral_mass="1838.321311" assumed_charge="3" index="125" retention_time_sec="763.4"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00063.00063.2" spectrumNativeID="sample=1 period=1 cycle=1215 experiment=3" start_scan="63" end_scan="63" precursor_neutral_mass="1225.547541" assumed_charge="2" index="126" retention_time_sec="763.4"> <search_result> <search_hit hit_rank="1" peptide="QVSHYRFCK" peptide_prev_aa="P" peptide_next_aa="V" protein="gi|528968108|ref|XP_005212569.1|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1225.554994" massdiff="-0.007453" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="786"> <modification_info modified_peptide="Q[129]VSHYRFCK"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.348"/> <search_score name="deltacn" value="0.008"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="4.51E+001"/> </search_hit> <search_hit hit_rank="2" peptide="EKTGNTSSDQR" peptide_prev_aa="L" peptide_next_aa="N" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="20" calc_neutral_pep_mass="1223.526590" massdiff="2.020951" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="786"> <modification_info modified_peptide="EKTGN[115]TSSDQ[129]R"> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.346"/> <search_score name="deltacn" value="0.068"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="4.63E+001"/> </search_hit> <search_hit hit_rank="3" peptide="DVYRVCEQR" peptide_prev_aa="A" peptide_next_aa="L" protein="gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1224.555722" massdiff="0.991819" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="786"> <modification_info modified_peptide="DVYRVCEQR"> <mod_aminoacid_mass position="6" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.322"/> <search_score name="deltacn" value="0.014"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="5.76E+001"/> </search_hit> <search_hit hit_rank="4" peptide="ENKSFNQEPK" peptide_prev_aa="Q" peptide_next_aa="K" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1222.535364" massdiff="3.012177" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="786"> <modification_info modified_peptide="EN[115]KSFN[115]Q[129]EPK"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.318"/> <search_score name="deltacn" value="0.005"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="6.00E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QLLEQYQTSD" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1224.551013" massdiff="0.996528" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="786"> <modification_info modified_peptide="QLLEQ[129]YQTSD"> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.316"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="6.10E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00064.00064.3" spectrumNativeID="sample=1 period=1 cycle=1215 experiment=4" start_scan="64" end_scan="64" precursor_neutral_mass="2020.037560" assumed_charge="3" index="127" retention_time_sec="765.5"> <search_result> <search_hit hit_rank="1" peptide="TQADLQQLRADLDAVSMK" peptide_prev_aa="H" peptide_next_aa="C" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="68" calc_neutral_pep_mass="2018.994256" massdiff="1.043305" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1558"> <modification_info modified_peptide="TQ[129]ADLQQLRADLDAVSM[147]K"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="17" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.846"/> <search_score name="deltacn" value="0.336"/> <search_score name="deltacnstar" value="0.271"/> <search_score name="spscore" value="6.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="9.47E+000"/> </search_hit> <search_hit hit_rank="2" peptide="TQADLQQLRADLDAVSMK" peptide_prev_aa="H" peptide_next_aa="C" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="68" calc_neutral_pep_mass="2018.010240" massdiff="2.027321" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1558"> <modification_info modified_peptide="TQADLQQLRADLDAVSM[147]K"> <mod_aminoacid_mass position="17" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.616"/> <search_score name="deltacn" value="0.090"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.3"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="4.35E+001"/> </search_hit> <search_hit hit_rank="3" peptide="CIASPLSTLQNRSLNLTK" peptide_prev_aa="E" peptide_next_aa="L" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="68" calc_neutral_pep_mass="2017.051392" massdiff="2.986168" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1558"> <modification_info modified_peptide="CIASPLSTLQ[129]NRSLNLTK"> <mod_aminoacid_mass position="1" mass="161.014665"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.561"/> <search_score name="deltacn" value="0.002"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="6.27E+001"/> </search_hit> <search_hit hit_rank="4" peptide="CIASPLSTLQNRSLNLTK" peptide_prev_aa="E" peptide_next_aa="L" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="68" calc_neutral_pep_mass="2017.051392" massdiff="2.986168" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1558"> <modification_info modified_peptide="CIASPLSTLQN[115]RSLNLTK"> <mod_aminoacid_mass position="1" mass="161.014665"/> <mod_aminoacid_mass position="11" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.561"/> <search_score name="deltacn" value="0.002"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="6.27E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ISDQLNRLFSELDRADK" peptide_prev_aa="S" peptide_next_aa="R" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="64" calc_neutral_pep_mass="2021.006550" massdiff="-0.968990" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1558"> <modification_info modified_peptide="ISDQ[129]LN[115]RLFSELDRADK"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.560"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.8"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="6.33E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00064.00064.2" spectrumNativeID="sample=1 period=1 cycle=1215 experiment=4" start_scan="64" end_scan="64" precursor_neutral_mass="1346.691707" assumed_charge="2" index="128" retention_time_sec="765.5"> <search_result> <search_hit hit_rank="1" peptide="KCAVVDVPFGGAK" peptide_prev_aa="Y" peptide_next_aa="A" protein="gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="24" calc_neutral_pep_mass="1347.685673" massdiff="-0.993966" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1364"> <modification_info modified_peptide="KCAVVDVPFGGAK"> <mod_aminoacid_mass position="2" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.905"/> <search_score name="deltacn" value="0.296"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="23.9"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.71E+000"/> </search_hit> <search_hit hit_rank="2" peptide="KENKSFNQEPK" peptide_prev_aa="Q" peptide_next_aa="D" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="20" calc_neutral_pep_mass="1347.678279" massdiff="-0.986572" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1364"> <search_score name="xcorr" value="0.637"/> <search_score name="deltacn" value="0.126"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.37E+001"/> </search_hit> <search_hit hit_rank="3" peptide="REEMKSSVVHK" peptide_prev_aa="W" peptide_next_aa="S" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1344.681969" massdiff="2.009737" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1364"> <modification_info modified_peptide="REEM[147]KSSVVHK"> <mod_aminoacid_mass position="4" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.556"/> <search_score name="deltacn" value="0.001"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="2.56E+001"/> </search_hit> <search_hit hit_rank="4" peptide="WLDDKQSQQAK" peptide_prev_aa="T" peptide_next_aa="N" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1345.662629" massdiff="1.029078" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1364"> <search_score name="xcorr" value="0.556"/> <search_score name="deltacn" value="0.196"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="2.58E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QLDFDGLPSGIGK" peptide_prev_aa="N" peptide_next_aa="L" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="24" calc_neutral_pep_mass="1345.687781" massdiff="1.003926" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1364"> <search_score name="xcorr" value="0.447"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="18"/> <search_score name="expect" value="6.01E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00065.00065.3" spectrumNativeID="sample=1 period=1 cycle=1216 experiment=2" start_scan="65" end_scan="65" precursor_neutral_mass="1389.623976" assumed_charge="3" index="129" retention_time_sec="768.2"> <search_result> <search_hit hit_rank="1" peptide="EAPQSHAILMEM" peptide_prev_aa="K" peptide_next_aa="S" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="44" calc_neutral_pep_mass="1388.595174" massdiff="1.028802" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="502"> <modification_info modified_peptide="EAPQ[129]SHAILM[147]EM[147]"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="147.035385"/> <mod_aminoacid_mass position="12" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.511"/> <search_score name="deltacn" value="0.147"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.7"/> <search_score name="sprank" value="23"/> <search_score name="expect" value="6.57E+000"/> </search_hit> <search_hit hit_rank="2" peptide="ENQGGIISEVQES" peptide_prev_aa="R" peptide_next_aa="N" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1390.609985" massdiff="-0.986009" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="502"> <modification_info modified_peptide="EN[115]Q[129]GGIISEVQES"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.435"/> <search_score name="deltacn" value="0.008"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.42E+001"/> </search_hit> <search_hit hit_rank="3" peptide="LPEGASQGMTPFR" peptide_prev_aa="I" peptide_next_aa="S" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="48" calc_neutral_pep_mass="1390.655101" massdiff="-1.031125" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="502"> <modification_info modified_peptide="LPEGASQ[129]GMTPFR"> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.432"/> <search_score name="deltacn" value="0.003"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="1.47E+001"/> </search_hit> <search_hit hit_rank="4" peptide="KEECNLAGNQIL" peptide_prev_aa="K" peptide_next_aa="T" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1390.628613" massdiff="-1.004637" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="502"> <modification_info modified_peptide="KEECN[115]LAGN[115]QIL"> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.431"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="1.49E+001"/> </search_hit> <search_hit hit_rank="5" peptide="KEECNLAGNQIL" peptide_prev_aa="K" peptide_next_aa="T" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1390.628613" massdiff="-1.004637" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="502"> <modification_info modified_peptide="KEECN[115]LAGNQ[129]IL"> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.431"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="1.49E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00065.00065.2" spectrumNativeID="sample=1 period=1 cycle=1216 experiment=2" start_scan="65" end_scan="65" precursor_neutral_mass="926.415984" assumed_charge="2" index="130" retention_time_sec="768.2"> <search_result> <search_hit hit_rank="1" peptide="PQNSSSFR" peptide_prev_aa="N" peptide_next_aa="E" protein="gi|119924469|ref|XP_001252524.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="923.398476" massdiff="3.017508" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="370"> <modification_info modified_peptide="PQ[129]N[115]SSSFR"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.349"/> <search_score name="deltacn" value="0.026"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.47E+001"/> </search_hit> <search_hit hit_rank="2" peptide="RTTGQFSQ" peptide_prev_aa="R" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="925.414126" massdiff="1.001858" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="370"> <modification_info modified_peptide="RTTGQ[129]FSQ[129]"> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.340"/> <search_score name="deltacn" value="0.079"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.6"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.65E+001"/> </search_hit> <search_hit hit_rank="3" peptide="DQDPIPQN" peptide_prev_aa="R" peptide_next_aa="I" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="925.414125" massdiff="1.001859" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="370"> <search_score name="xcorr" value="0.313"/> <search_score name="deltacn" value="0.006"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.3"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.27E+001"/> </search_hit> <search_hit hit_rank="4" peptide="ISSSSDSRS" peptide_prev_aa="K" peptide_next_aa="S" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="924.414853" massdiff="2.001130" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="370"> <search_score name="xcorr" value="0.311"/> <search_score name="deltacn" value="0.034"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.3"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="2.32E+001"/> </search_hit> <search_hit hit_rank="5" peptide="FMENKSR" peptide_prev_aa="Q" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="927.412002" massdiff="-0.996019" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="370"> <modification_info modified_peptide="FM[147]EN[115]KSR"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.301"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="2.64E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00066.00066.3" spectrumNativeID="sample=1 period=1 cycle=1216 experiment=3" start_scan="66" end_scan="66" precursor_neutral_mass="1500.587574" assumed_charge="3" index="131" retention_time_sec="770.3"> <search_result> <search_hit hit_rank="1" peptide="QCFGRGCEPCVK" peptide_prev_aa="F" peptide_next_aa="A" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1500.568338" massdiff="0.019235" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="214"> <modification_info modified_peptide="Q[129]CFGRGCEPCVK"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="161.014665"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.333"/> <search_score name="deltacn" value="0.013"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.43E+001"/> </search_hit> <search_hit hit_rank="2" peptide="SESTEDQAMEDIK" peptide_prev_aa="G" peptide_next_aa="Q" protein="gi|528953234|ref|XP_005208080.1|" num_tot_proteins="6" num_matched_ions="1" tot_num_ions="48" calc_neutral_pep_mass="1498.598085" massdiff="1.989489" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="214"> <modification_info modified_peptide="SESTEDQ[129]AM[147]EDIK"> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.329"/> <search_score name="deltacn" value="0.186"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.2"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="1.51E+001"/> </search_hit> <search_hit hit_rank="3" peptide="QCFGRGCEPCVK" peptide_prev_aa="F" peptide_next_aa="A" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="44" calc_neutral_pep_mass="1499.584322" massdiff="1.003251" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="214"> <modification_info modified_peptide="QCFGRGCEPCVK"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="161.014665"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.268"/> <search_score name="deltacn" value="0.155"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.6"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="3.34E+001"/> </search_hit> <search_hit hit_rank="4" peptide="DSWDYALEEEEN" peptide_prev_aa="K" peptide_next_aa="N" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1498.573599" massdiff="2.013975" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="214"> <search_score name="xcorr" value="0.226"/> <search_score name="deltacn" value="0.090"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.7"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="5.70E+001"/> </search_hit> <search_hit hit_rank="5" peptide="MNMFRGFFDSQT" peptide_prev_aa="K" peptide_next_aa="C" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1497.590438" massdiff="2.997136" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="214"> <modification_info modified_peptide="M[147]N[115]MFRGFFDSQ[129]T"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.206"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="7.43E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00066.00066.2" spectrumNativeID="sample=1 period=1 cycle=1216 experiment=3" start_scan="66" end_scan="66" precursor_neutral_mass="1000.391716" assumed_charge="2" index="132" retention_time_sec="770.3"> <search_result> <search_hit hit_rank="1" peptide="MFQTVMDE" peptide_prev_aa="R" peptide_next_aa="T" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="1000.388170" massdiff="0.003546" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="122"> <modification_info modified_peptide="MFQ[129]TVMDE"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.350"/> <search_score name="deltacn" value="0.082"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.2"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.97E+000"/> </search_hit> <search_hit hit_rank="2" peptide="LENDTYNE" peptide_prev_aa="K" peptide_next_aa="K" protein="XXX_gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="998.371652" massdiff="2.020064" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="122"> <modification_info modified_peptide="LEN[115]DTYN[115]E"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.321"/> <search_score name="deltacn" value="0.063"/> <search_score name="deltacnstar" value="0.002"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="6.19E+000"/> </search_hit> <search_hit hit_rank="3" peptide="LENDTYNE" peptide_prev_aa="K" peptide_next_aa="K" protein="XXX_gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="997.387636" massdiff="3.004080" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="122"> <modification_info modified_peptide="LENDTYN[115]E"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.320"/> <search_score name="deltacn" value="0.061"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="6.26E+000"/> </search_hit> <search_hit hit_rank="4" peptide="DFHPQDNK" peptide_prev_aa="K" peptide_next_aa="S" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="1001.409041" massdiff="-1.017325" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="122"> <modification_info modified_peptide="DFHPQ[129]DN[115]K"> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.301"/> <search_score name="deltacn" value="0.029"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="8.47E+000"/> </search_hit> <search_hit hit_rank="5" peptide="DQDILNHM" peptide_prev_aa="R" peptide_next_aa="A" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="1001.412396" massdiff="-1.020681" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="122"> <modification_info modified_peptide="DQ[129]DILNHM[147]"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.292"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="9.69E+000"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00067.00067.2" spectrumNativeID="sample=1 period=1 cycle=1216 experiment=4" start_scan="67" end_scan="67" precursor_neutral_mass="809.293500" assumed_charge="2" index="133" retention_time_sec="772.4"> <search_result> <search_hit hit_rank="1" peptide="NQPNFTS" peptide_prev_aa="K" peptide_next_aa="S" protein="XXX_gi|119924469|ref|XP_001252524.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="809.307930" massdiff="-0.014429" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="118"> <modification_info modified_peptide="N[115]Q[129]PN[115]FTS"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.537"/> <search_score name="deltacn" value="0.126"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="QACEGNK" peptide_prev_aa="E" peptide_next_aa="K" protein="XXX_gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="808.290900" massdiff="1.002601" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="118"> <modification_info modified_peptide="Q[129]ACEGN[115]K"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.469"/> <search_score name="deltacn" value="0.322"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.5"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.86E+000"/> </search_hit> <search_hit hit_rank="3" peptide="LEECEQ" peptide_prev_aa="R" peptide_next_aa="R" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="10" calc_neutral_pep_mass="807.295650" massdiff="1.997850" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="118"> <modification_info modified_peptide="LEECEQ"> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.318"/> <search_score name="deltacn" value="0.087"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.6"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.30E+001"/> </search_hit> <search_hit hit_rank="4" peptide="GCQQCR" peptide_prev_aa="V" peptide_next_aa="G" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="10" calc_neutral_pep_mass="809.279624" massdiff="0.013877" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="118"> <modification_info modified_peptide="GCQQCR"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.290"/> <search_score name="deltacn" value="0.034"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.85E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ENTGQQE" peptide_prev_aa="K" peptide_next_aa="A" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="807.277024" massdiff="2.016477" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="118"> <modification_info modified_peptide="EN[115]TGQ[129]Q[129]E"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.280"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.2"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="2.10E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00067.00067.3" spectrumNativeID="sample=1 period=1 cycle=1216 experiment=4" start_scan="67" end_scan="67" precursor_neutral_mass="1213.940251" assumed_charge="3" index="134" retention_time_sec="772.4"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00068.00068.2" spectrumNativeID="sample=1 period=1 cycle=1216 experiment=5" start_scan="68" end_scan="68" precursor_neutral_mass="1149.594918" assumed_charge="2" index="135" retention_time_sec="774.2"> <search_result> <search_hit hit_rank="1" peptide="LDGIKTRYAD" peptide_prev_aa="K" peptide_next_aa="I" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1150.598238" massdiff="-1.003319" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="648"> <search_score name="xcorr" value="0.808"/> <search_score name="deltacn" value="0.129"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="19.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="APLTEIENYV" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1147.576105" massdiff="2.018813" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="648"> <search_score name="xcorr" value="0.704"/> <search_score name="deltacn" value="0.340"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.6"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="3" peptide="TRVLNQYEQ" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1149.577836" massdiff="0.017082" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="648"> <search_score name="xcorr" value="0.464"/> <search_score name="deltacn" value="0.070"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="4.29E+000"/> </search_hit> <search_hit hit_rank="4" peptide="ALQKNQSDLK" peptide_prev_aa="S" peptide_next_aa="D" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1146.576835" massdiff="3.018084" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="648"> <modification_info modified_peptide="ALQ[129]KN[115]Q[129]SDLK"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.432"/> <search_score name="deltacn" value="0.081"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.7"/> <search_score name="sprank" value="22"/> <search_score name="expect" value="6.31E+000"/> </search_hit> <search_hit hit_rank="5" peptide="IKDVSMSDLK" peptide_prev_aa="E" peptide_next_aa="D" protein="gi|528968108|ref|XP_005212569.1|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1150.590360" massdiff="-0.995442" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="648"> <modification_info modified_peptide="IKDVSM[147]SDLK"> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.397"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.0"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="9.54E+000"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00068.00068.3" spectrumNativeID="sample=1 period=1 cycle=1216 experiment=5" start_scan="68" end_scan="68" precursor_neutral_mass="1724.392378" assumed_charge="3" index="136" retention_time_sec="774.2"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00069.00069.3" spectrumNativeID="sample=1 period=1 cycle=1217 experiment=2" start_scan="69" end_scan="69" precursor_neutral_mass="1502.210983" assumed_charge="3" index="137" retention_time_sec="776.8"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00069.00069.2" spectrumNativeID="sample=1 period=1 cycle=1217 experiment=2" start_scan="69" end_scan="69" precursor_neutral_mass="1001.473989" assumed_charge="2" index="138" retention_time_sec="776.8"> <search_result> <search_hit hit_rank="1" peptide="ASIGDGGEPVT" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="20" calc_neutral_pep_mass="1001.466555" massdiff="0.007434" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="306"> <search_score name="xcorr" value="0.373"/> <search_score name="deltacn" value="0.066"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="14.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="9.37E+000"/> </search_hit> <search_hit hit_rank="2" peptide="IEQDLQEK" peptide_prev_aa="V" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="1002.486956" massdiff="-1.012967" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="306"> <modification_info modified_peptide="IEQ[129]DLQEK"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.349"/> <search_score name="deltacn" value="0.024"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.4"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.29E+001"/> </search_hit> <search_hit hit_rank="3" peptide="PSDTIENVK" peptide_prev_aa="E" peptide_next_aa="A" protein="gi|528918160|ref|XP_005195085.1|" num_tot_proteins="27" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1002.486956" massdiff="-1.012967" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="306"> <modification_info modified_peptide="PSDTIEN[115]VK"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.340"/> <search_score name="deltacn" value="0.163"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="1.44E+001"/> </search_hit> <search_hit hit_rank="4" peptide="VNEITDSPK" peptide_prev_aa="E" peptide_next_aa="A" protein="XXX_gi|528918160|ref|XP_005195085.1|" num_tot_proteins="27" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1002.486956" massdiff="-1.012967" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="306"> <modification_info modified_peptide="VN[115]EITDSPK"> <mod_aminoacid_mass position="2" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.285"/> <search_score name="deltacn" value="0.032"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.0"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="2.97E+001"/> </search_hit> <search_hit hit_rank="5" peptide="VQDWPNLK" peptide_prev_aa="V" peptide_next_aa="R" protein="XXX_gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="1000.486563" massdiff="0.987426" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="306"> <modification_info modified_peptide="VQ[129]DWPN[115]LK"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.276"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.5"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="3.35E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00070.00070.3" spectrumNativeID="sample=1 period=1 cycle=1217 experiment=3" start_scan="70" end_scan="70" precursor_neutral_mass="1596.754867" assumed_charge="3" index="139" retention_time_sec="778.0"> <search_result> <search_hit hit_rank="1" peptide="GVTEHSNQQQGRKE" peptide_prev_aa="R" peptide_next_aa="E" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1596.760445" massdiff="-0.005579" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1120"> <search_score name="xcorr" value="0.514"/> <search_score name="deltacn" value="0.199"/> <search_score name="deltacnstar" value="0.001"/> <search_score name="spscore" value="3.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.13E+001"/> </search_hit> <search_hit hit_rank="2" peptide="GVTEHSNQQQGRKE" peptide_prev_aa="R" peptide_next_aa="E" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1597.744461" massdiff="-0.989595" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1120"> <modification_info modified_peptide="GVTEHSNQQ[129]QGRKE"> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.514"/> <search_score name="deltacn" value="0.198"/> <search_score name="deltacnstar" value="0.002"/> <search_score name="spscore" value="3.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.13E+001"/> </search_hit> <search_hit hit_rank="3" peptide="GVTEHSNQQQGRKE" peptide_prev_aa="R" peptide_next_aa="E" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1597.744461" massdiff="-0.989595" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1120"> <modification_info modified_peptide="GVTEHSNQQQ[129]GRKE"> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.513"/> <search_score name="deltacn" value="0.196"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.14E+001"/> </search_hit> <search_hit hit_rank="4" peptide="IVTNDLWDFMAQK" peptide_prev_aa="L" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1597.733397" massdiff="-0.978530" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1120"> <modification_info modified_peptide="IVTN[115]DLWDFM[147]AQ[129]K"> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="10" mass="147.035385"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.412"/> <search_score name="deltacn" value="0.007"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.90E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QESSSISEAEMQKK" peptide_prev_aa="I" peptide_next_aa="H" protein="XXX_gi|528953238|ref|XP_005208082.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="52" calc_neutral_pep_mass="1596.730101" massdiff="0.024765" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1120"> <modification_info modified_peptide="QESSSISEAEM[147]QKK"> <mod_aminoacid_mass position="11" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.409"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.2"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="2.97E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00070.00070.2" spectrumNativeID="sample=1 period=1 cycle=1217 experiment=3" start_scan="70" end_scan="70" precursor_neutral_mass="1064.503245" assumed_charge="2" index="140" retention_time_sec="778.0"> <search_result> <search_hit hit_rank="1" peptide="LVETSINCK" peptide_prev_aa="L" peptide_next_aa="V" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1064.505978" massdiff="-0.002733" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="642"> <modification_info modified_peptide="LVETSIN[115]CK"> <mod_aminoacid_mass position="7" mass="115.026943"/> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.507"/> <search_score name="deltacn" value="0.210"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.16E+000"/> </search_hit> <search_hit hit_rank="2" peptide="GLDDPKEHR" peptide_prev_aa="V" peptide_next_aa="G" protein="XXX_gi|528935739|ref|XP_005201142.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1065.520322" massdiff="-1.017077" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="642"> <search_score name="xcorr" value="0.401"/> <search_score name="deltacn" value="0.326"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.0"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="6.87E+000"/> </search_hit> <search_hit hit_rank="3" peptide="EPAENLGAHK" peptide_prev_aa="G" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1065.509089" massdiff="-1.005844" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="642"> <modification_info modified_peptide="EPAEN[115]LGAHK"> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.270"/> <search_score name="deltacn" value="0.060"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="2.84E+001"/> </search_hit> <search_hit hit_rank="4" peptide="VLNDMTTAAE" peptide_prev_aa="K" peptide_next_aa="E" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1063.485576" massdiff="1.017669" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="642"> <search_score name="xcorr" value="0.254"/> <search_score name="deltacn" value="0.015"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.8"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="3.38E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LAYLCEPVP" peptide_prev_aa="R" peptide_next_aa="G" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1061.510334" massdiff="2.992910" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="642"> <modification_info modified_peptide="LAYLCEPVP"> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.250"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="24"/> <search_score name="expect" value="3.51E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00071.00071.2" spectrumNativeID="sample=1 period=1 cycle=1217 experiment=4" start_scan="71" end_scan="71" precursor_neutral_mass="1141.631808" assumed_charge="2" index="141" retention_time_sec="780.2"> <search_result> <search_hit hit_rank="1" peptide="AVAGVIDLGTVE" peptide_prev_aa="R" peptide_next_aa="I" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="22" calc_neutral_pep_mass="1142.618304" massdiff="-0.986496" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="470"> <search_score name="xcorr" value="0.585"/> <search_score name="deltacn" value="0.097"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.3"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="4.21E+000"/> </search_hit> <search_hit hit_rank="2" peptide="QNSPKVQNVK" peptide_prev_aa="E" peptide_next_aa="E" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1141.609137" massdiff="0.022671" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="470"> <modification_info modified_peptide="QN[115]SPKVQNVK"> <mod_aminoacid_mass position="2" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.528"/> <search_score name="deltacn" value="0.001"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.4"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="7.13E+000"/> </search_hit> <search_hit hit_rank="3" peptide="GALILRQQDK" peptide_prev_aa="P" peptide_next_aa="Q" protein="XXX_gi|528918160|ref|XP_005195085.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1141.645523" massdiff="-0.013715" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="470"> <modification_info modified_peptide="GALILRQQ[129]DK"> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.527"/> <search_score name="deltacn" value="0.104"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="7.16E+000"/> </search_hit> <search_hit hit_rank="4" peptide="QLAPNADGVKK" peptide_prev_aa="L" peptide_next_aa="V" protein="XXX_gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="20" calc_neutral_pep_mass="1140.613888" massdiff="1.017920" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="470"> <modification_info modified_peptide="QLAPN[115]ADGVKK"> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.472"/> <search_score name="deltacn" value="0.006"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="19"/> <search_score name="expect" value="1.19E+001"/> </search_hit> <search_hit hit_rank="5" peptide="GALILRQQDK" peptide_prev_aa="P" peptide_next_aa="Q" protein="XXX_gi|528918160|ref|XP_005195085.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1141.645523" massdiff="-0.013715" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="470"> <modification_info modified_peptide="GALILRQ[129]QDK"> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.469"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="1.23E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00071.00071.3" spectrumNativeID="sample=1 period=1 cycle=1217 experiment=4" start_scan="71" end_scan="71" precursor_neutral_mass="1712.447712" assumed_charge="3" index="142" retention_time_sec="780.2"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00072.00072.2" spectrumNativeID="sample=1 period=1 cycle=1217 experiment=5" start_scan="72" end_scan="72" precursor_neutral_mass="951.381158" assumed_charge="2" index="143" retention_time_sec="782.3"> <search_result> <search_hit hit_rank="1" peptide="GEEELMQT" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="5" tot_num_ions="14" calc_neutral_pep_mass="951.385513" massdiff="-0.004354" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="258"> <modification_info modified_peptide="GEEELM[147]QT"> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.710"/> <search_score name="deltacn" value="0.340"/> <search_score name="deltacnstar" value="0.307"/> <search_score name="spscore" value="41.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.69E+000"/> </search_hit> <search_hit hit_rank="2" peptide="GEEELMQT" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="14" calc_neutral_pep_mass="952.369529" massdiff="-0.988370" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="258"> <modification_info modified_peptide="GEEELM[147]Q[129]T"> <mod_aminoacid_mass position="6" mass="147.035385"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.493"/> <search_score name="deltacn" value="0.049"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.5"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.51E+001"/> </search_hit> <search_hit hit_rank="3" peptide="MEEQQQR" peptide_prev_aa="R" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="950.365127" massdiff="1.016031" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="258"> <modification_info modified_peptide="MEEQ[129]Q[129]Q[129]R"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.469"/> <search_score name="deltacn" value="0.069"/> <search_score name="deltacnstar" value="0.042"/> <search_score name="spscore" value="16.6"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.83E+001"/> </search_hit> <search_hit hit_rank="4" peptide="MEEQQQR" peptide_prev_aa="R" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="949.381111" massdiff="2.000047" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="258"> <modification_info modified_peptide="MEEQ[129]Q[129]QR"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.449"/> <search_score name="deltacn" value="0.028"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="16.6"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.13E+001"/> </search_hit> <search_hit hit_rank="5" peptide="DMNQNIGAS" peptide_prev_aa="K" peptide_next_aa="I" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="949.381111" massdiff="2.000047" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="258"> <modification_info modified_peptide="DMNQN[115]IGAS"> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.436"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.2"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="2.36E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00072.00072.3" spectrumNativeID="sample=1 period=1 cycle=1217 experiment=5" start_scan="72" end_scan="72" precursor_neutral_mass="1427.071737" assumed_charge="3" index="144" retention_time_sec="782.3"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00073.00073.3" spectrumNativeID="sample=1 period=1 cycle=1218 experiment=2" start_scan="73" end_scan="73" precursor_neutral_mass="1730.290499" assumed_charge="3" index="145" retention_time_sec="784.9"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00073.00073.2" spectrumNativeID="sample=1 period=1 cycle=1218 experiment=2" start_scan="73" end_scan="73" precursor_neutral_mass="1153.526999" assumed_charge="2" index="146" retention_time_sec="784.9"> <search_result> <search_hit hit_rank="1" peptide="QTKLDQCQK" peptide_prev_aa="N" peptide_next_aa="F" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1150.517606" massdiff="3.009394" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="474"> <modification_info modified_peptide="QTKLDQ[129]CQ[129]K"> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.500"/> <search_score name="deltacn" value="0.077"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.2"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="1.38E+001"/> </search_hit> <search_hit hit_rank="2" peptide="DQDPIPQNID" peptide_prev_aa="R" peptide_next_aa="R" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1153.525132" massdiff="0.001867" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="474"> <search_score name="xcorr" value="0.461"/> <search_score name="deltacn" value="0.019"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="17.6"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.95E+001"/> </search_hit> <search_hit hit_rank="3" peptide="PHRAESSTDR" peptide_prev_aa="T" peptide_next_aa="A" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1154.542848" massdiff="-1.015849" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="474"> <search_score name="xcorr" value="0.452"/> <search_score name="deltacn" value="0.053"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.11E+001"/> </search_hit> <search_hit hit_rank="4" peptide="SSSNHLNFTF" peptide_prev_aa="K" peptide_next_aa="G" protein="XXX_gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1153.504003" massdiff="0.022996" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="474"> <modification_info modified_peptide="SSSNHLN[115]FTF"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.428"/> <search_score name="deltacn" value="0.004"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="20.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.62E+001"/> </search_hit> <search_hit hit_rank="5" peptide="EVSKGCVTDR" peptide_prev_aa="W" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1150.528838" massdiff="2.998161" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="474"> <modification_info modified_peptide="EVSKGCVTDR"> <mod_aminoacid_mass position="6" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.427"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.66E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00074.00074.3" spectrumNativeID="sample=1 period=1 cycle=1218 experiment=3" start_scan="74" end_scan="74" precursor_neutral_mass="1410.627712" assumed_charge="3" index="147" retention_time_sec="787.0"> <search_result> <search_hit hit_rank="1" peptide="SGANGTKTSEENGR" peptide_prev_aa="G" peptide_next_aa="L" protein="XXX_gi|528935739|ref|XP_005201142.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1407.622615" massdiff="3.005097" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1072"> <modification_info modified_peptide="SGAN[115]GTKTSEENGR"> <mod_aminoacid_mass position="4" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.493"/> <search_score name="deltacn" value="0.072"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.4"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="9.79E+000"/> </search_hit> <search_hit hit_rank="2" peptide="SNEESTSLQERK" peptide_prev_aa="N" peptide_next_aa="K" protein="XXX_gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1408.631783" massdiff="1.995929" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1072"> <modification_info modified_peptide="SN[115]EESTSLQ[129]ERK"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.457"/> <search_score name="deltacn" value="0.124"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.6"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.45E+001"/> </search_hit> <search_hit hit_rank="3" peptide="QQDPPIGEKDQR" peptide_prev_aa="I" peptide_next_aa="L" protein="XXX_gi|528918160|ref|XP_005195085.1|" num_tot_proteins="26" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1411.657938" massdiff="-1.030226" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1072"> <modification_info modified_peptide="QQ[129]DPPIGEKDQ[129]R"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.400"/> <search_score name="deltacn" value="0.078"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.9"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="2.71E+001"/> </search_hit> <search_hit hit_rank="4" peptide="NPRMETESLQTT" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="44" calc_neutral_pep_mass="1407.618776" massdiff="3.008936" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1072"> <modification_info modified_peptide="N[115]PRMETESLQ[129]TT"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.369"/> <search_score name="deltacn" value="0.003"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.4"/> <search_score name="sprank" value="30"/> <search_score name="expect" value="3.83E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QQDPPIGEKDQR" peptide_prev_aa="I" peptide_next_aa="L" protein="XXX_gi|528918160|ref|XP_005195085.1|" num_tot_proteins="26" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1411.657938" massdiff="-1.030226" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1072"> <modification_info modified_peptide="Q[129]QDPPIGEKDQ[129]R"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.368"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.9"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="3.88E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00074.00074.2" spectrumNativeID="sample=1 period=1 cycle=1218 experiment=3" start_scan="74" end_scan="74" precursor_neutral_mass="940.418475" assumed_charge="2" index="148" retention_time_sec="787.0"> <search_result> <search_hit hit_rank="1" peptide="LETQYCK" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="941.416434" massdiff="-0.997959" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="478"> <modification_info modified_peptide="LETQYCK"> <mod_aminoacid_mass position="6" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.347"/> <search_score name="deltacn" value="0.065"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.3"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.00E+001"/> </search_hit> <search_hit hit_rank="2" peptide="GTMFTMPR" peptide_prev_aa="L" peptide_next_aa="L" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="939.430644" massdiff="0.987831" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="478"> <search_score name="xcorr" value="0.324"/> <search_score name="deltacn" value="0.021"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.0"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.36E+001"/> </search_hit> <search_hit hit_rank="3" peptide="SQGMTPFR" peptide_prev_aa="A" peptide_next_aa="S" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="939.412002" massdiff="1.006472" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="478"> <modification_info modified_peptide="SQ[129]GM[147]TPFR"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.317"/> <search_score name="deltacn" value="0.170"/> <search_score name="deltacnstar" value="0.036"/> <search_score name="spscore" value="10.6"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.49E+001"/> </search_hit> <search_hit hit_rank="4" peptide="SQGMTPFR" peptide_prev_aa="A" peptide_next_aa="S" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="938.427986" massdiff="1.990488" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="478"> <modification_info modified_peptide="SQGM[147]TPFR"> <mod_aminoacid_mass position="4" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.306"/> <search_score name="deltacn" value="0.139"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.9"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.75E+001"/> </search_hit> <search_hit hit_rank="5" peptide="SQLQWMK" peptide_prev_aa="Q" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="937.421505" massdiff="2.996970" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="478"> <modification_info modified_peptide="SQ[129]LQ[129]WM[147]K"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.263"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.12E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00075.00075.3" spectrumNativeID="sample=1 period=1 cycle=1218 experiment=4" start_scan="75" end_scan="75" precursor_neutral_mass="1940.427160" assumed_charge="3" index="149" retention_time_sec="789.2"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00075.00075.2" spectrumNativeID="sample=1 period=1 cycle=1218 experiment=4" start_scan="75" end_scan="75" precursor_neutral_mass="1293.618107" assumed_charge="2" index="150" retention_time_sec="789.2"> <search_result> <search_hit hit_rank="1" peptide="LLQDSMAQDEK" peptide_prev_aa="D" peptide_next_aa="E" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1292.591817" massdiff="1.026290" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1060"> <modification_info modified_peptide="LLQDSM[147]AQDEK"> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.658"/> <search_score name="deltacn" value="0.305"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.4"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.18E+000"/> </search_hit> <search_hit hit_rank="2" peptide="WKTRQSNDEK" peptide_prev_aa="L" peptide_next_aa="V" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1290.631663" massdiff="2.986444" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1060"> <search_score name="xcorr" value="0.457"/> <search_score name="deltacn" value="0.002"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.65E+001"/> </search_hit> <search_hit hit_rank="3" peptide="WKTRQSNDEK" peptide_prev_aa="L" peptide_next_aa="V" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1291.615679" massdiff="2.002428" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1060"> <modification_info modified_peptide="WKTRQ[129]SNDEK"> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.457"/> <search_score name="deltacn" value="0.001"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.65E+001"/> </search_hit> <search_hit hit_rank="4" peptide="VYQQQIEMEK" peptide_prev_aa="E" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1294.622738" massdiff="-1.004631" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1060"> <search_score name="xcorr" value="0.456"/> <search_score name="deltacn" value="0.091"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.9"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="1.66E+001"/> </search_hit> <search_hit hit_rank="5" peptide="MMKVNVAEQLE" peptide_prev_aa="K" peptide_next_aa="T" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1291.615210" massdiff="2.002897" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1060"> <modification_info modified_peptide="MMKVNVAEQ[129]LE"> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.415"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.9"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="2.52E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00076.00076.2" spectrumNativeID="sample=1 period=1 cycle=1218 experiment=5" start_scan="76" end_scan="76" precursor_neutral_mass="1173.529087" assumed_charge="2" index="151" retention_time_sec="791.3"> <search_result> <search_hit hit_rank="1" peptide="MVQHYEGPAK" peptide_prev_aa="S" peptide_next_aa="N" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1174.544079" massdiff="-1.014992" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="590"> <modification_info modified_peptide="M[147]VQHYEGPAK"> <mod_aminoacid_mass position="1" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.587"/> <search_score name="deltacn" value="0.029"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="8.80E+000"/> </search_hit> <search_hit hit_rank="2" peptide="KWSPLAEEES" peptide_prev_aa="R" peptide_next_aa="V" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1174.550619" massdiff="-1.021532" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="590"> <search_score name="xcorr" value="0.570"/> <search_score name="deltacn" value="0.086"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.6"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.02E+001"/> </search_hit> <search_hit hit_rank="3" peptide="ATSPQTKEPTD" peptide_prev_aa="K" peptide_next_aa="I" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1174.535363" massdiff="-1.006276" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="590"> <modification_info modified_peptide="ATSPQ[129]TKEPTD"> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.521"/> <search_score name="deltacn" value="0.036"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.55E+001"/> </search_hit> <search_hit hit_rank="4" peptide="KQEESAEAGAPG" peptide_prev_aa="R" peptide_next_aa="G" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="22" calc_neutral_pep_mass="1172.530946" massdiff="0.998141" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="590"> <search_score name="xcorr" value="0.502"/> <search_score name="deltacn" value="0.149"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="21"/> <search_score name="expect" value="1.83E+001"/> </search_hit> <search_hit hit_rank="5" peptide="TPEKTQPSTAD" peptide_prev_aa="K" peptide_next_aa="I" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1173.551347" massdiff="-0.022260" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="590"> <search_score name="xcorr" value="0.427"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.9"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="3.48E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00076.00076.3" spectrumNativeID="sample=1 period=1 cycle=1218 experiment=5" start_scan="76" end_scan="76" precursor_neutral_mass="1760.293630" assumed_charge="3" index="152" retention_time_sec="791.3"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00077.00077.2" spectrumNativeID="sample=1 period=1 cycle=1219 experiment=2" start_scan="77" end_scan="77" precursor_neutral_mass="972.472063" assumed_charge="2" index="153" retention_time_sec="792.6"> <search_result> <search_hit hit_rank="1" peptide="ALGSHVIDY" peptide_prev_aa="K" peptide_next_aa="T" protein="XXX_gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="973.486896" massdiff="-1.014833" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="404"> <search_score name="xcorr" value="0.483"/> <search_score name="deltacn" value="0.011"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="5.24E+000"/> </search_hit> <search_hit hit_rank="2" peptide="TEPHSFQK" peptide_prev_aa="R" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="972.466495" massdiff="0.005568" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="404"> <search_score name="xcorr" value="0.478"/> <search_score name="deltacn" value="0.031"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.1"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="5.56E+000"/> </search_hit> <search_hit hit_rank="3" peptide="ALDARDDAK" peptide_prev_aa="C" peptide_next_aa="Y" protein="XXX_gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="973.482873" massdiff="-1.010810" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="404"> <search_score name="xcorr" value="0.463"/> <search_score name="deltacn" value="0.038"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="6.58E+000"/> </search_hit> <search_hit hit_rank="4" peptide="TQQQENPK" peptide_prev_aa="M" peptide_next_aa="F" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="971.467223" massdiff="1.004840" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="404"> <search_score name="xcorr" value="0.445"/> <search_score name="deltacn" value="0.107"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.6"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="8.01E+000"/> </search_hit> <search_hit hit_rank="5" peptide="DQNRISIGA" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="973.482874" massdiff="-1.010811" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="404"> <modification_info modified_peptide="DQN[115]RISIGA"> <mod_aminoacid_mass position="3" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.398"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.36E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00077.00077.3" spectrumNativeID="sample=1 period=1 cycle=1219 experiment=2" start_scan="77" end_scan="77" precursor_neutral_mass="1458.708095" assumed_charge="3" index="154" retention_time_sec="792.6"> <search_result> <search_hit hit_rank="1" peptide="EGQLRMKEAAPNL" peptide_prev_aa="R" peptide_next_aa="D" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1457.718430" massdiff="0.989665" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1274"> <modification_info modified_peptide="EGQ[129]LRMKEAAPN[115]L"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="12" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.654"/> <search_score name="deltacn" value="0.023"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.8"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.57E+001"/> </search_hit> <search_hit hit_rank="2" peptide="VVRMTQQQENPK" peptide_prev_aa="E" peptide_next_aa="F" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1457.729663" massdiff="0.978432" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1274"> <modification_info modified_peptide="VVRMTQ[129]QQENPK"> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.639"/> <search_score name="deltacn" value="0.028"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.8"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.76E+001"/> </search_hit> <search_hit hit_rank="3" peptide="PLSIDPNMLNAQK" peptide_prev_aa="G" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1458.691198" massdiff="0.016897" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1274"> <modification_info modified_peptide="PLSIDPN[115]M[147]LN[115]AQ[129]K"> <mod_aminoacid_mass position="7" mass="115.026943"/> <mod_aminoacid_mass position="8" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="115.026943"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.621"/> <search_score name="deltacn" value="0.070"/> <search_score name="deltacnstar" value="0.002"/> <search_score name="spscore" value="2.7"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="2.03E+001"/> </search_hit> <search_hit hit_rank="4" peptide="PLSIDPNMLNAQK" peptide_prev_aa="G" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1457.707182" massdiff="1.000913" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1274"> <modification_info modified_peptide="PLSIDPNM[147]LN[115]AQ[129]K"> <mod_aminoacid_mass position="8" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="115.026943"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.620"/> <search_score name="deltacn" value="0.069"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.7"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="2.05E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ENKRFQAFMNR" peptide_prev_aa="N" peptide_next_aa="D" protein="XXX_gi|528968106|ref|XP_005212568.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="40" calc_neutral_pep_mass="1456.688118" massdiff="2.019977" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1274"> <modification_info modified_peptide="ENKRFQAFM[147]N[115]R"> <mod_aminoacid_mass position="9" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.577"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.6"/> <search_score name="sprank" value="17"/> <search_score name="expect" value="2.87E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00078.00078.2" spectrumNativeID="sample=1 period=1 cycle=1219 experiment=3" start_scan="78" end_scan="78" precursor_neutral_mass="1016.499382" assumed_charge="2" index="155" retention_time_sec="794.8"> <search_result> <search_hit hit_rank="1" peptide="PHGSPSPLEP" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1016.492710" massdiff="0.006672" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="964"> <search_score name="xcorr" value="0.493"/> <search_score name="deltacn" value="0.160"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.6"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.02E+001"/> </search_hit> <search_hit hit_rank="2" peptide="THSGEKPYV" peptide_prev_aa="R" peptide_next_aa="C" protein="gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1016.492710" massdiff="0.006672" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="964"> <search_score name="xcorr" value="0.415"/> <search_score name="deltacn" value="0.014"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.1"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="2.36E+001"/> </search_hit> <search_hit hit_rank="3" peptide="DFPIANGER" peptide_prev_aa="K" peptide_next_aa="Q" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1017.487959" massdiff="-0.988577" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="964"> <search_score name="xcorr" value="0.409"/> <search_score name="deltacn" value="0.025"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="19"/> <search_score name="expect" value="2.52E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QNVGIMPEL" peptide_prev_aa="K" peptide_next_aa="F" protein="XXX_gi|528953236|ref|XP_005208081.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1016.484833" massdiff="0.014548" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="964"> <modification_info modified_peptide="QN[115]VGIM[147]PEL"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.398"/> <search_score name="deltacn" value="0.011"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="23"/> <search_score name="expect" value="2.81E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LQQVNGLGQG" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1014.498190" massdiff="2.001192" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="964"> <modification_info modified_peptide="LQQVN[115]GLGQ[129]G"> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.394"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.95E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00078.00078.3" spectrumNativeID="sample=1 period=1 cycle=1219 experiment=3" start_scan="78" end_scan="78" precursor_neutral_mass="1524.749072" assumed_charge="3" index="156" retention_time_sec="794.8"> <search_result> <search_hit hit_rank="1" peptide="REIQEIQAFTGSF" peptide_prev_aa="K" peptide_next_aa="V" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="48" calc_neutral_pep_mass="1525.741273" massdiff="-0.992201" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1382"> <modification_info modified_peptide="REIQ[129]EIQAFTGSF"> <mod_aminoacid_mass position="4" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.797"/> <search_score name="deltacn" value="0.070"/> <search_score name="deltacnstar" value="0.059"/> <search_score name="spscore" value="18.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.99E+000"/> </search_hit> <search_hit hit_rank="2" peptide="REIQEIQAFTGSF" peptide_prev_aa="K" peptide_next_aa="V" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="4" tot_num_ions="48" calc_neutral_pep_mass="1524.757258" massdiff="-0.008185" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1382"> <search_score name="xcorr" value="0.750"/> <search_score name="deltacn" value="0.012"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="13.2"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="5.92E+000"/> </search_hit> <search_hit hit_rank="3" peptide="KPSPCEFINTTAR" peptide_prev_aa="K" peptide_next_aa="V" protein="gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="48" calc_neutral_pep_mass="1521.713345" massdiff="3.035727" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="1382"> <modification_info modified_peptide="KPSPCEFIN[115]TTAR"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.741"/> <search_score name="deltacn" value="0.082"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.3"/> <search_score name="sprank" value="31"/> <search_score name="expect" value="6.39E+000"/> </search_hit> <search_hit hit_rank="4" peptide="LNGASMIAMVRTGTT" peptide_prev_aa="R" peptide_next_aa="G" protein="XXX_gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1521.764334" massdiff="2.984739" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1382"> <search_score name="xcorr" value="0.680"/> <search_score name="deltacn" value="0.089"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="24"/> <search_score name="expect" value="1.07E+001"/> </search_hit> <search_hit hit_rank="5" peptide="SAITQKIWSVYNN" peptide_prev_aa="C" peptide_next_aa="-" protein="XXX_gi|528903801|ref|XP_871686.4|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="48" calc_neutral_pep_mass="1523.762009" massdiff="0.987063" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1382"> <modification_info modified_peptide="SAITQKIWSVYNN[115]"> <mod_aminoacid_mass position="13" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.620"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.1"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.78E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00079.00079.3" spectrumNativeID="sample=1 period=1 cycle=1219 experiment=4" start_scan="79" end_scan="79" precursor_neutral_mass="1443.612982" assumed_charge="3" index="157" retention_time_sec="796.9"> <search_result> <search_hit hit_rank="1" peptide="MSLNNSSNVFLDS" peptide_prev_aa="-" peptide_next_aa="T" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1442.634744" massdiff="0.978238" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="408"> <modification_info modified_peptide="M[147]SLNNSSNVFLDS"> <mod_aminoacid_mass position="1" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.741"/> <search_score name="deltacn" value="0.220"/> <search_score name="deltacnstar" value="0.118"/> <search_score name="spscore" value="11.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="8.68E+000"/> </search_hit> <search_hit hit_rank="2" peptide="MSLNNSSNVFLDS" peptide_prev_aa="-" peptide_next_aa="T" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1443.618760" massdiff="-0.005778" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="408"> <modification_info modified_peptide="M[147]SLN[115]NSSNVFLDS"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.654"/> <search_score name="deltacn" value="0.116"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.54E+001"/> </search_hit> <search_hit hit_rank="3" peptide="MSLNNSSNVFLDS" peptide_prev_aa="-" peptide_next_aa="T" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1443.618760" massdiff="-0.005778" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="408"> <modification_info modified_peptide="M[147]SLNN[115]SSNVFLDS"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.654"/> <search_score name="deltacn" value="0.116"/> <search_score name="deltacnstar" value="0.018"/> <search_score name="spscore" value="10.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.54E+001"/> </search_hit> <search_hit hit_rank="4" peptide="MSLNNSSNVFLDS" peptide_prev_aa="-" peptide_next_aa="T" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1444.602776" massdiff="-0.989794" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="408"> <modification_info modified_peptide="M[147]SLN[115]N[115]SSNVFLDS"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.642"/> <search_score name="deltacn" value="0.100"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.67E+001"/> </search_hit> <search_hit hit_rank="5" peptide="NRKQEESAEAGAPG" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1444.643016" massdiff="-1.030034" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="408"> <modification_info modified_peptide="N[115]RKQ[129]EESAEAGAPG"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="4" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.578"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.8"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="2.54E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00079.00079.2" spectrumNativeID="sample=1 period=1 cycle=1219 experiment=4" start_scan="79" end_scan="79" precursor_neutral_mass="962.408655" assumed_charge="2" index="158" retention_time_sec="796.9"> <search_result> <search_hit hit_rank="1" peptide="SQENLENK" peptide_prev_aa="I" peptide_next_aa="E" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="14" calc_neutral_pep_mass="963.403287" massdiff="-0.994632" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="382"> <modification_info modified_peptide="SQ[129]EN[115]LEN[115]K"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.546"/> <search_score name="deltacn" value="0.106"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="22.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="6.33E+000"/> </search_hit> <search_hit hit_rank="2" peptide="SSGWNVDPT" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="961.414125" massdiff="0.994530" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="382"> <search_score name="xcorr" value="0.488"/> <search_score name="deltacn" value="0.067"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.9"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.06E+001"/> </search_hit> <search_hit hit_rank="3" peptide="SSGWNVDPT" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="962.398141" massdiff="0.010514" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="382"> <modification_info modified_peptide="SSGWN[115]VDPT"> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.488"/> <search_score name="deltacn" value="0.067"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.9"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.06E+001"/> </search_hit> <search_hit hit_rank="4" peptide="GGSAEGGGSQPG" peptide_prev_aa="R" peptide_next_aa="E" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="22" calc_neutral_pep_mass="959.394452" massdiff="3.014203" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="382"> <search_score name="xcorr" value="0.455"/> <search_score name="deltacn" value="0.077"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.1"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.43E+001"/> </search_hit> <search_hit hit_rank="5" peptide="SQENLENK" peptide_prev_aa="I" peptide_next_aa="E" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="962.419271" massdiff="-0.010616" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="382"> <modification_info modified_peptide="SQ[129]ENLEN[115]K"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.421"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.6"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.95E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00080.00080.3" spectrumNativeID="sample=1 period=1 cycle=1220 experiment=2" start_scan="80" end_scan="80" precursor_neutral_mass="1227.620988" assumed_charge="3" index="159" retention_time_sec="799.5"> <search_result> <search_hit hit_rank="1" peptide="QRVFQRVMF" peptide_prev_aa="-" peptide_next_aa="G" protein="XXX_gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="32" calc_neutral_pep_mass="1227.607014" massdiff="0.013974" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="546"> <modification_info modified_peptide="Q[129]RVFQ[129]RVM[147]F"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.565"/> <search_score name="deltacn" value="0.087"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.78E+000"/> </search_hit> <search_hit hit_rank="2" peptide="EQLSRLTPER" peptide_prev_aa="A" peptide_next_aa="N" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="36" calc_neutral_pep_mass="1228.641165" massdiff="-1.020177" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="546"> <modification_info modified_peptide="EQ[129]LSRLTPER"> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.516"/> <search_score name="deltacn" value="0.141"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.6"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="6.38E+000"/> </search_hit> <search_hit hit_rank="3" peptide="QRVFQRVMF" peptide_prev_aa="-" peptide_next_aa="G" protein="XXX_gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="3" tot_num_ions="32" calc_neutral_pep_mass="1226.622998" massdiff="0.997990" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="546"> <modification_info modified_peptide="Q[129]RVFQRVM[147]F"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.443"/> <search_score name="deltacn" value="0.001"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.39E+001"/> </search_hit> <search_hit hit_rank="4" peptide="DIRRFFDMK" peptide_prev_aa="V" peptide_next_aa="D" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="32" calc_neutral_pep_mass="1226.623013" massdiff="0.997976" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="546"> <search_score name="xcorr" value="0.443"/> <search_score name="deltacn" value="0.038"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.2"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.40E+001"/> </search_hit> <search_hit hit_rank="5" peptide="EVGCGAPVPLVK" peptide_prev_aa="W" peptide_next_aa="C" protein="gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1225.637660" massdiff="1.983328" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="546"> <modification_info modified_peptide="EVGCGAPVPLVK"> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.426"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="1.68E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00080.00080.2" spectrumNativeID="sample=1 period=1 cycle=1220 experiment=2" start_scan="80" end_scan="80" precursor_neutral_mass="818.413992" assumed_charge="2" index="160" retention_time_sec="799.5"> <search_result> <search_hit hit_rank="1" peptide="MRPMLR" peptide_prev_aa="E" peptide_next_aa="L" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="10" calc_neutral_pep_mass="818.425484" massdiff="-0.011492" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="840"> <modification_info modified_peptide="MRPM[147]LR"> <mod_aminoacid_mass position="4" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.430"/> <search_score name="deltacn" value="0.072"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="7.26E+000"/> </search_hit> <search_hit hit_rank="2" peptide="ALGISDNQ" peptide_prev_aa="R" peptide_next_aa="V" protein="XXX_gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="816.397747" massdiff="2.016245" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="840"> <search_score name="xcorr" value="0.399"/> <search_score name="deltacn" value="0.022"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.1"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.07E+001"/> </search_hit> <search_hit hit_rank="3" peptide="TAPDSQAK" peptide_prev_aa="I" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="816.397747" massdiff="2.016245" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="840"> <search_score name="xcorr" value="0.390"/> <search_score name="deltacn" value="0.174"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="18"/> <search_score name="expect" value="1.19E+001"/> </search_hit> <search_hit hit_rank="4" peptide="NMAPGLLT" peptide_prev_aa="K" peptide_next_aa="T" protein="gi|528908802|ref|XP_005199340.1|" num_tot_proteins="8" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="816.405141" massdiff="2.008851" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="840"> <modification_info modified_peptide="N[115]MAPGLLT"> <mod_aminoacid_mass position="1" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.322"/> <search_score name="deltacn" value="0.029"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.6"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="2.78E+001"/> </search_hit> <search_hit hit_rank="5" peptide="DATVNGLK" peptide_prev_aa="D" peptide_next_aa="N" protein="XXX_gi|528935739|ref|XP_005201142.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="817.418148" massdiff="0.995844" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="840"> <modification_info modified_peptide="DATVN[115]GLK"> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.313"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="3.12E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00081.00081.3" spectrumNativeID="sample=1 period=1 cycle=1221 experiment=2" start_scan="81" end_scan="81" precursor_neutral_mass="1235.029860" assumed_charge="3" index="161" retention_time_sec="802.1"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00081.00081.2" spectrumNativeID="sample=1 period=1 cycle=1221 experiment=2" start_scan="81" end_scan="81" precursor_neutral_mass="823.353240" assumed_charge="2" index="162" retention_time_sec="802.1"> <search_result> <search_hit hit_rank="1" peptide="YSAENQL" peptide_prev_aa="K" peptide_next_aa="R" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="824.355214" massdiff="-1.001974" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="238"> <modification_info modified_peptide="YSAEN[115]QL"> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.308"/> <search_score name="deltacn" value="0.091"/> <search_score name="deltacnstar" value="0.039"/> <search_score name="spscore" value="2.7"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.62E+001"/> </search_hit> <search_hit hit_rank="2" peptide="YSAENQL" peptide_prev_aa="K" peptide_next_aa="R" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="824.355214" massdiff="-1.001974" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="238"> <modification_info modified_peptide="YSAENQ[129]L"> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.296"/> <search_score name="deltacn" value="0.054"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.7"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.88E+001"/> </search_hit> <search_hit hit_rank="3" peptide="PYVCRE" peptide_prev_aa="K" peptide_next_aa="C" protein="gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="10" calc_neutral_pep_mass="823.353440" massdiff="-0.000200" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="238"> <modification_info modified_peptide="PYVCRE"> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.280"/> <search_score name="deltacn" value="0.116"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="2.30E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QPVYDTT" peptide_prev_aa="K" peptide_next_aa="I" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="12" calc_neutral_pep_mass="823.359965" massdiff="-0.006725" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="238"> <modification_info modified_peptide="Q[129]PVYDTT"> <mod_aminoacid_mass position="1" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.248"/> <search_score name="deltacn" value="0.011"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="3.47E+001"/> </search_hit> <search_hit hit_rank="5" peptide="YESNELA" peptide_prev_aa="R" peptide_next_aa="V" protein="XXX_gi|119924469|ref|XP_001252524.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="824.355213" massdiff="-1.001973" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="238"> <search_score name="xcorr" value="0.245"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.58E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00082.00082.2" spectrumNativeID="sample=1 period=1 cycle=1221 experiment=3" start_scan="82" end_scan="82" precursor_neutral_mass="1367.577760" assumed_charge="2" index="163" retention_time_sec="804.3"> <search_result> <search_hit hit_rank="1" peptide="LEDAMQAAVQYQ" peptide_prev_aa="K" peptide_next_aa="D" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="22" calc_neutral_pep_mass="1367.591498" massdiff="-0.013738" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="382"> <modification_info modified_peptide="LEDAMQ[129]AAVQ[129]YQ"> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.544"/> <search_score name="deltacn" value="0.222"/> <search_score name="deltacnstar" value="0.143"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="3.72E+000"/> </search_hit> <search_hit hit_rank="2" peptide="LEDAMQAAVQYQ" peptide_prev_aa="K" peptide_next_aa="D" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="22" calc_neutral_pep_mass="1367.591498" massdiff="-0.013738" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="382"> <modification_info modified_peptide="LEDAMQ[129]AAVQYQ[129]"> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.466"/> <search_score name="deltacn" value="0.092"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="8.01E+000"/> </search_hit> <search_hit hit_rank="3" peptide="NQGEDGFSTEER" peptide_prev_aa="Y" peptide_next_aa="F" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="22" calc_neutral_pep_mass="1367.558952" massdiff="0.018808" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="382"> <search_score name="xcorr" value="0.423"/> <search_score name="deltacn" value="0.119"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.23E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LEDAMQAAVQYQ" peptide_prev_aa="K" peptide_next_aa="D" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="22" calc_neutral_pep_mass="1367.591498" massdiff="-0.013738" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="382"> <modification_info modified_peptide="LEDAMQAAVQ[129]YQ[129]"> <mod_aminoacid_mass position="10" mass="129.042594"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.373"/> <search_score name="deltacn" value="0.027"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="2.01E+001"/> </search_hit> <search_hit hit_rank="5" peptide="GYYSVLCQVMF" peptide_prev_aa="-" peptide_next_aa="P" protein="XXX_gi|528993971|ref|XP_005219929.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1366.593747" massdiff="0.984013" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="382"> <modification_info modified_peptide="GYYSVLCQVMF"> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.363"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.22E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00082.00082.3" spectrumNativeID="sample=1 period=1 cycle=1221 experiment=3" start_scan="82" end_scan="82" precursor_neutral_mass="2051.366640" assumed_charge="3" index="164" retention_time_sec="804.3"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00083.00083.2" spectrumNativeID="sample=1 period=1 cycle=1222 experiment=2" start_scan="83" end_scan="83" precursor_neutral_mass="1162.555923" assumed_charge="2" index="165" retention_time_sec="807.0"> <search_result> <search_hit hit_rank="1" peptide="VIDEGLMDEK" peptide_prev_aa="E" peptide_next_aa="L" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1163.537991" massdiff="-0.982067" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1074"> <modification_info modified_peptide="VIDEGLM[147]DEK"> <mod_aminoacid_mass position="7" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.771"/> <search_score name="deltacn" value="0.384"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="TLNGASMIAMVG" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="22" calc_neutral_pep_mass="1163.567865" massdiff="-1.011942" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1074"> <search_score name="xcorr" value="0.475"/> <search_score name="deltacn" value="0.267"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="7.69E+000"/> </search_hit> <search_hit hit_rank="3" peptide="QETQQALQSK" peptide_prev_aa="Q" peptide_next_aa="T" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1162.535364" massdiff="0.020560" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1074"> <modification_info modified_peptide="QETQ[129]Q[129]ALQ[129]SK"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.348"/> <search_score name="deltacn" value="0.049"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.2"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="3.09E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LVPWIEDCK" peptide_prev_aa="D" peptide_next_aa="A" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1159.558347" massdiff="2.997576" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1074"> <modification_info modified_peptide="LVPWIEDCK"> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.331"/> <search_score name="deltacn" value="0.027"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.8"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="3.72E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ALIAEHQTFM" peptide_prev_aa="K" peptide_next_aa="E" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1160.553596" massdiff="2.002327" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1074"> <modification_info modified_peptide="ALIAEHQ[129]TFM"> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.322"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="4.11E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00083.00083.3" spectrumNativeID="sample=1 period=1 cycle=1222 experiment=2" start_scan="83" end_scan="83" precursor_neutral_mass="1743.833885" assumed_charge="3" index="166" retention_time_sec="807.0"> <search_result> <search_hit hit_rank="1" peptide="YAAELHLVHWNTKY" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="52" calc_neutral_pep_mass="1744.857306" massdiff="-1.023421" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1386"> <modification_info modified_peptide="YAAELHLVHWN[115]TKY"> <mod_aminoacid_mass position="11" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.678"/> <search_score name="deltacn" value="0.049"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.33E+000"/> </search_hit> <search_hit hit_rank="2" peptide="NKPEGSVVMFGGVDHR" peptide_prev_aa="T" peptide_next_aa="Y" protein="gi|28849951|ref|NP_788787.1|" num_tot_proteins="1" num_matched_ions="5" tot_num_ions="60" calc_neutral_pep_mass="1744.820254" massdiff="-0.986369" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1386"> <modification_info modified_peptide="N[115]KPEGSVVM[147]FGGVDHR"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.644"/> <search_score name="deltacn" value="0.135"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="4.62E+000"/> </search_hit> <search_hit hit_rank="3" peptide="GRELSDALQMHPMVK" peptide_prev_aa="D" peptide_next_aa="F" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1742.844346" massdiff="0.989540" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1386"> <modification_info modified_peptide="GRELSDALQM[147]HPM[147]VK"> <mod_aminoacid_mass position="10" mass="147.035385"/> <mod_aminoacid_mass position="13" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.557"/> <search_score name="deltacn" value="0.030"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.2"/> <search_score name="sprank" value="28"/> <search_score name="expect" value="1.09E+001"/> </search_hit> <search_hit hit_rank="4" peptide="PGQAEDSRVLSEQLSQ" peptide_prev_aa="K" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="60" calc_neutral_pep_mass="1743.827522" massdiff="0.006363" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1386"> <modification_info modified_peptide="PGQAEDSRVLSEQLSQ[129]"> <mod_aminoacid_mass position="16" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.541"/> <search_score name="deltacn" value="0.028"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="1.27E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ATDETDRDIIREPLT" peptide_prev_aa="K" peptide_next_aa="E" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1743.863908" massdiff="-0.030022" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1386"> <search_score name="xcorr" value="0.525"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="1.48E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00084.00084.2" spectrumNativeID="sample=1 period=1 cycle=1223 experiment=2" start_scan="84" end_scan="84" precursor_neutral_mass="1219.507293" assumed_charge="2" index="167" retention_time_sec="809.6"> <search_result> <search_hit hit_rank="1" peptide="AYSAHFCSFK" peptide_prev_aa="N" peptide_next_aa="S" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1217.517545" massdiff="1.989748" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="234"> <modification_info modified_peptide="AYSAHFCSFK"> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.303"/> <search_score name="deltacn" value="0.171"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="9.86E+000"/> </search_hit> <search_hit hit_rank="2" peptide="AECGHSFRQK" peptide_prev_aa="C" peptide_next_aa="V" protein="gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1220.524422" massdiff="-1.017129" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="234"> <modification_info modified_peptide="AECGHSFRQ[129]K"> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.252"/> <search_score name="deltacn" value="0.039"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="2.07E+001"/> </search_hit> <search_hit hit_rank="3" peptide="QRCGTFGDMK" peptide_prev_aa="-" peptide_next_aa="M" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1216.485244" massdiff="3.022049" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="234"> <modification_info modified_peptide="Q[129]RCGTFGDM[147]K"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="9" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.242"/> <search_score name="deltacn" value="0.037"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="2.38E+001"/> </search_hit> <search_hit hit_rank="4" peptide="SEDNPMNQDLG" peptide_prev_aa="M" peptide_next_aa="-" protein="XXX_gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1218.482281" massdiff="1.025012" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="234"> <search_score name="xcorr" value="0.233"/> <search_score name="deltacn" value="0.007"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.71E+001"/> </search_hit> <search_hit hit_rank="5" peptide="GCYHRDFHK" peptide_prev_aa="S" peptide_next_aa="C" protein="XXX_gi|528968221|ref|XP_005212615.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1219.519276" massdiff="-0.011983" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="234"> <modification_info modified_peptide="GCYHRDFHK"> <mod_aminoacid_mass position="2" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.231"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.77E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00084.00084.3" spectrumNativeID="sample=1 period=1 cycle=1223 experiment=2" start_scan="84" end_scan="84" precursor_neutral_mass="1829.260940" assumed_charge="3" index="168" retention_time_sec="809.6"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00085.00085.3" spectrumNativeID="sample=1 period=1 cycle=1223 experiment=3" start_scan="85" end_scan="85" precursor_neutral_mass="1431.709140" assumed_charge="3" index="169" retention_time_sec="811.7"> <search_result> <search_hit hit_rank="1" peptide="QVEQMRSLVAQK" peptide_prev_aa="L" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1432.734399" massdiff="-1.025259" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1494"> <modification_info modified_peptide="Q[129]VEQM[147]RSLVAQK"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.695"/> <search_score name="deltacn" value="0.048"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.6"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.31E+001"/> </search_hit> <search_hit hit_rank="2" peptide="DFPIANGERQSPV" peptide_prev_aa="K" peptide_next_aa="D" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1428.699743" massdiff="3.009397" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1494"> <search_score name="xcorr" value="0.662"/> <search_score name="deltacn" value="0.022"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.7"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.70E+001"/> </search_hit> <search_hit hit_rank="3" peptide="TVCGKSVERQHK" peptide_prev_aa="D" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1429.698363" massdiff="2.010777" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1494"> <modification_info modified_peptide="TVCGKSVERQ[129]HK"> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.647"/> <search_score name="deltacn" value="0.028"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.5"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="1.90E+001"/> </search_hit> <search_hit hit_rank="4" peptide="ALTNAGLNIAPCGR" peptide_prev_aa="S" peptide_next_aa="L" protein="gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1429.687131" massdiff="2.022010" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1494"> <modification_info modified_peptide="ALTN[115]AGLN[115]IAPCGR"> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="8" mass="115.026943"/> <mod_aminoacid_mass position="12" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.629"/> <search_score name="deltacn" value="0.049"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.9"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="2.20E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LNTVKDQLNEMK" peptide_prev_aa="D" peptide_next_aa="E" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1432.723181" massdiff="-1.014041" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1494"> <modification_info modified_peptide="LN[115]TVKDQLNEMK"> <mod_aminoacid_mass position="2" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.598"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.5"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="2.80E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00085.00085.2" spectrumNativeID="sample=1 period=1 cycle=1223 experiment=3" start_scan="85" end_scan="85" precursor_neutral_mass="954.472760" assumed_charge="2" index="170" retention_time_sec="811.7"> <search_result> <search_hit hit_rank="1" peptide="LASFCPRT" peptide_prev_aa="R" peptide_next_aa="P" protein="XXX_gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="951.448403" massdiff="3.024357" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="418"> <modification_info modified_peptide="LASFCPRT"> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.493"/> <search_score name="deltacn" value="0.109"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="19.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.35E+000"/> </search_hit> <search_hit hit_rank="2" peptide="ALQEHIDK" peptide_prev_aa="L" peptide_next_aa="N" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="953.481811" massdiff="0.990949" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="418"> <modification_info modified_peptide="ALQ[129]EHIDK"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.439"/> <search_score name="deltacn" value="0.181"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.1"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.69E+000"/> </search_hit> <search_hit hit_rank="3" peptide="VNEPFYGK" peptide_prev_aa="G" peptide_next_aa="A" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="952.465432" massdiff="2.007328" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="418"> <search_score name="xcorr" value="0.360"/> <search_score name="deltacn" value="0.043"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.9"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="7.48E+000"/> </search_hit> <search_hit hit_rank="4" peptide="NELTEFAK" peptide_prev_aa="V" peptide_next_aa="T" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="951.454928" massdiff="3.017832" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="418"> <modification_info modified_peptide="N[115]ELTEFAK"> <mod_aminoacid_mass position="1" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.344"/> <search_score name="deltacn" value="0.108"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.9"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="9.11E+000"/> </search_hit> <search_hit hit_rank="5" peptide="RIYLDQM" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="953.464038" massdiff="1.008722" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="418"> <modification_info modified_peptide="RIYLDQM[147]"> <mod_aminoacid_mass position="7" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.307"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.7"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.47E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00086.00086.3" spectrumNativeID="sample=1 period=1 cycle=1224 experiment=2" start_scan="86" end_scan="86" precursor_neutral_mass="1725.858220" assumed_charge="3" index="171" retention_time_sec="814.4"> <search_result> <search_hit hit_rank="1" peptide="AIDQDPQNGSALLRSH" peptide_prev_aa="K" peptide_next_aa="F" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="60" calc_neutral_pep_mass="1722.817292" massdiff="3.040928" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1878"> <modification_info modified_peptide="AIDQ[129]DPQN[115]GSALLRSH"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.705"/> <search_score name="deltacn" value="0.097"/> <search_score name="deltacnstar" value="0.001"/> <search_score name="spscore" value="5.2"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.86E+001"/> </search_hit> <search_hit hit_rank="2" peptide="AIDQDPQNGSALLRSH" peptide_prev_aa="K" peptide_next_aa="F" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="60" calc_neutral_pep_mass="1722.817292" massdiff="3.040928" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1878"> <modification_info modified_peptide="AIDQ[129]DPQ[129]NGSALLRSH"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.704"/> <search_score name="deltacn" value="0.096"/> <search_score name="deltacnstar" value="0.093"/> <search_score name="spscore" value="5.2"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.87E+001"/> </search_hit> <search_hit hit_rank="3" peptide="AIDQDPQNGSALLRSH" peptide_prev_aa="K" peptide_next_aa="F" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="60" calc_neutral_pep_mass="1722.817292" massdiff="3.040928" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1878"> <modification_info modified_peptide="AIDQDPQ[129]N[115]GSALLRSH"> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.639"/> <search_score name="deltacn" value="0.003"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.2"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="3.06E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LNAARSHEQLLENLI" peptide_prev_aa="R" peptide_next_aa="V" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="4" tot_num_ions="56" calc_neutral_pep_mass="1722.878830" massdiff="2.979390" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1878"> <modification_info modified_peptide="LN[115]AARSHEQ[129]LLEN[115]LI"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="129.042594"/> <mod_aminoacid_mass position="13" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.637"/> <search_score name="deltacn" value="0.064"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.10E+001"/> </search_hit> <search_hit hit_rank="5" peptide="SLNLVLMNKANELEH" peptide_prev_aa="R" peptide_next_aa="N" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1725.860737" massdiff="-0.002517" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1878"> <modification_info modified_peptide="SLNLVLMN[115]KAN[115]ELEH"> <mod_aminoacid_mass position="8" mass="115.026943"/> <mod_aminoacid_mass position="11" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.596"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.0"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="4.21E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00086.00086.2" spectrumNativeID="sample=1 period=1 cycle=1224 experiment=2" start_scan="86" end_scan="86" precursor_neutral_mass="1150.572147" assumed_charge="2" index="172" retention_time_sec="814.4"> <search_result> <search_hit hit_rank="1" peptide="APLTEIENYV" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1147.576105" massdiff="2.996042" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="814"> <search_score name="xcorr" value="0.621"/> <search_score name="deltacn" value="0.248"/> <search_score name="deltacnstar" value="0.237"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="25"/> <search_score name="expect" value="4.09E+000"/> </search_hit> <search_hit hit_rank="2" peptide="APLTEIENYV" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1148.560121" massdiff="2.012026" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="814"> <modification_info modified_peptide="APLTEIEN[115]YV"> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.473"/> <search_score name="deltacn" value="0.014"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="25"/> <search_score name="expect" value="1.68E+001"/> </search_hit> <search_hit hit_rank="3" peptide="LQSYLEMHK" peptide_prev_aa="T" peptide_next_aa="A" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="1148.553596" massdiff="2.018551" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="814"> <modification_info modified_peptide="LQ[129]SYLEMHK"> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.467"/> <search_score name="deltacn" value="0.003"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.2"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.79E+001"/> </search_hit> <search_hit hit_rank="4" peptide="TRVLNQYEQ" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="1149.577836" massdiff="0.994310" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="814"> <search_score name="xcorr" value="0.465"/> <search_score name="deltacn" value="0.079"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="16.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.82E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LPENNKGYGR" peptide_prev_aa="K" peptide_next_aa="G" protein="XXX_gi|358414198|ref|XP_002700672.2|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="18" calc_neutral_pep_mass="1147.562187" massdiff="3.009960" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="814"> <modification_info modified_peptide="LPEN[115]NKGYGR"> <mod_aminoacid_mass position="4" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.428"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.4"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="2.59E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00087.00087.3" spectrumNativeID="sample=1 period=1 cycle=1225 experiment=2" start_scan="87" end_scan="87" precursor_neutral_mass="1649.161878" assumed_charge="3" index="173" retention_time_sec="817.0"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00087.00087.2" spectrumNativeID="sample=1 period=1 cycle=1225 experiment=2" start_scan="87" end_scan="87" precursor_neutral_mass="1099.441252" assumed_charge="2" index="174" retention_time_sec="817.0"> <search_result> <search_hit hit_rank="1" peptide="DMVTQFMET" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1100.451833" massdiff="-1.010581" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="180"> <search_score name="xcorr" value="0.504"/> <search_score name="deltacn" value="0.115"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="14.6"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.73E+000"/> </search_hit> <search_hit hit_rank="2" peptide="AEDEPEWPQ" peptide_prev_aa="R" peptide_next_aa="P" protein="gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1100.429835" massdiff="-0.988584" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="180"> <modification_info modified_peptide="AEDEPEWPQ[129]"> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.447"/> <search_score name="deltacn" value="0.407"/> <search_score name="deltacnstar" value="0.180"/> <search_score name="spscore" value="1.8"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="6.64E+000"/> </search_hit> <search_hit hit_rank="3" peptide="AEDEPEWPQ" peptide_prev_aa="R" peptide_next_aa="P" protein="gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1099.445819" massdiff="-0.004568" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="180"> <search_score name="xcorr" value="0.366"/> <search_score name="deltacn" value="0.277"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.8"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.48E+001"/> </search_hit> <search_hit hit_rank="4" peptide="EMFQTVMDT" peptide_prev_aa="R" peptide_next_aa="A" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1100.451833" massdiff="-1.010581" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="180"> <search_score name="xcorr" value="0.265"/> <search_score name="deltacn" value="0.270"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="4.08E+001"/> </search_hit> <search_hit hit_rank="5" peptide="NQIDDQLDH" peptide_prev_aa="K" peptide_next_aa="A" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1098.446548" massdiff="0.994703" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="180"> <modification_info modified_peptide="NQ[129]IDDQ[129]LDH"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.193"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="8.34E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00088.00088.2" spectrumNativeID="sample=1 period=1 cycle=1228 experiment=2" start_scan="88" end_scan="88" precursor_neutral_mass="999.376058" assumed_charge="2" index="175" retention_time_sec="820.7"> <search_result> <search_hit hit_rank="1" peptide="DTNCIFPQ" peptide_prev_aa="K" peptide_next_aa="E" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="996.374630" massdiff="3.001429" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="138"> <modification_info modified_peptide="DTN[115]CIFPQ[129]"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.295"/> <search_score name="deltacn" value="0.110"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="8.80E+000"/> </search_hit> <search_hit hit_rank="2" peptide="ATLSSEMMN" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="999.388884" massdiff="-0.012825" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="138"> <modification_info modified_peptide="ATLSSEMM[147]N[115]"> <mod_aminoacid_mass position="8" mass="147.035385"/> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.263"/> <search_score name="deltacn" value="0.060"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.2"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.45E+001"/> </search_hit> <search_hit hit_rank="3" peptide="DQSDDYEK" peptide_prev_aa="V" peptide_next_aa="A" protein="XXX_gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="999.366901" massdiff="0.009158" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="138"> <modification_info modified_peptide="DQ[129]SDDYEK"> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.247"/> <search_score name="deltacn" value="0.008"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.86E+001"/> </search_hit> <search_hit hit_rank="4" peptide="YHFNCMQ" peptide_prev_aa="K" peptide_next_aa="G" protein="XXX_gi|528968106|ref|XP_005212568.1|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="12" calc_neutral_pep_mass="999.357873" massdiff="0.018185" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="138"> <modification_info modified_peptide="YHFNCMQ"> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.245"/> <search_score name="deltacn" value="0.045"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.92E+001"/> </search_hit> <search_hit hit_rank="5" peptide="CQQCVFPG" peptide_prev_aa="R" peptide_next_aa="R" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="997.352120" massdiff="2.023938" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="138"> <modification_info modified_peptide="CQQ[129]CVFPG"> <mod_aminoacid_mass position="1" mass="161.014665"/> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.234"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="2.28E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00088.00088.3" spectrumNativeID="sample=1 period=1 cycle=1228 experiment=2" start_scan="88" end_scan="88" precursor_neutral_mass="1499.064088" assumed_charge="3" index="176" retention_time_sec="820.7"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00089.00089.3" spectrumNativeID="sample=1 period=1 cycle=1228 experiment=3" start_scan="89" end_scan="89" precursor_neutral_mass="1815.802638" assumed_charge="3" index="177" retention_time_sec="822.8"> <search_result> <search_hit hit_rank="1" peptide="AFQECERVDLNFQR" peptide_prev_aa="Q" peptide_next_aa="S" protein="XXX_gi|528968108|ref|XP_005212569.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1812.810099" massdiff="2.992539" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="734"> <modification_info modified_peptide="AFQECERVDLNFQ[129]R"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="13" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.659"/> <search_score name="deltacn" value="0.068"/> <search_score name="deltacnstar" value="0.003"/> <search_score name="spscore" value="2.6"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="1.64E+001"/> </search_hit> <search_hit hit_rank="2" peptide="AFQECERVDLNFQR" peptide_prev_aa="Q" peptide_next_aa="S" protein="XXX_gi|528968108|ref|XP_005212569.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1812.810099" massdiff="2.992539" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="734"> <modification_info modified_peptide="AFQECERVDLN[115]FQR"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="11" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.656"/> <search_score name="deltacn" value="0.065"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.6"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="1.67E+001"/> </search_hit> <search_hit hit_rank="3" peptide="TMWDYDALQLFQDIG" peptide_prev_aa="K" peptide_next_aa="D" protein="XXX_gi|528968108|ref|XP_005212569.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1816.786569" massdiff="-0.983931" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="734"> <modification_info modified_peptide="TMWDYDALQ[129]LFQ[129]DIG"> <mod_aminoacid_mass position="9" mass="129.042594"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.614"/> <search_score name="deltacn" value="0.035"/> <search_score name="deltacnstar" value="0.002"/> <search_score name="spscore" value="7.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.23E+001"/> </search_hit> <search_hit hit_rank="4" peptide="TMWDYDALQLFQDIG" peptide_prev_aa="K" peptide_next_aa="D" protein="XXX_gi|528968108|ref|XP_005212569.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1815.802553" massdiff="0.000085" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="734"> <modification_info modified_peptide="TMWDYDALQLFQ[129]DIG"> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.612"/> <search_score name="deltacn" value="0.032"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.25E+001"/> </search_hit> <search_hit hit_rank="5" peptide="AFQECERVDLNFQR" peptide_prev_aa="Q" peptide_next_aa="S" protein="XXX_gi|528968108|ref|XP_005212569.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1813.794115" massdiff="2.008523" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="734"> <modification_info modified_peptide="AFQECERVDLN[115]FQ[129]R"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="11" mass="115.026943"/> <mod_aminoacid_mass position="13" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.592"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.6"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="2.58E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00089.00089.2" spectrumNativeID="sample=1 period=1 cycle=1228 experiment=3" start_scan="89" end_scan="89" precursor_neutral_mass="1210.535092" assumed_charge="2" index="178" retention_time_sec="822.8"> <search_result> <search_hit hit_rank="1" peptide="TQLSETEMRP" peptide_prev_aa="K" peptide_next_aa="N" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1207.539054" massdiff="2.996038" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="740"> <modification_info modified_peptide="TQ[129]LSETEM[147]RP"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.553"/> <search_score name="deltacn" value="0.014"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.6"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="4.19E+000"/> </search_hit> <search_hit hit_rank="2" peptide="TEDSSSQMTPK" peptide_prev_aa="E" peptide_next_aa="G" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1209.518332" massdiff="1.016760" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="740"> <search_score name="xcorr" value="0.546"/> <search_score name="deltacn" value="0.127"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.0"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="4.54E+000"/> </search_hit> <search_hit hit_rank="3" peptide="PQQSARGVTEH" peptide_prev_aa="K" peptide_next_aa="S" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1210.557830" massdiff="-0.022738" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="740"> <modification_info modified_peptide="PQ[129]Q[129]SARGVTEH"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.476"/> <search_score name="deltacn" value="0.128"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.6"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="9.18E+000"/> </search_hit> <search_hit hit_rank="4" peptide="TRLDMFEQR" peptide_prev_aa="T" peptide_next_aa="Y" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="1211.560458" massdiff="-1.025366" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="740"> <modification_info modified_peptide="TRLDM[147]FEQ[129]R"> <mod_aminoacid_mass position="5" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.415"/> <search_score name="deltacn" value="0.055"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="24.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.70E+001"/> </search_hit> <search_hit hit_rank="5" peptide="AQQTEQKGCR" peptide_prev_aa="L" peptide_next_aa="A" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1207.513917" massdiff="3.021175" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="740"> <modification_info modified_peptide="AQ[129]Q[129]TEQKGCR"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.392"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.4"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="2.15E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00090.00090.3" spectrumNativeID="sample=1 period=1 cycle=1229 experiment=2" start_scan="90" end_scan="90" precursor_neutral_mass="1565.046264" assumed_charge="3" index="179" retention_time_sec="825.5"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00090.00090.2" spectrumNativeID="sample=1 period=1 cycle=1229 experiment=2" start_scan="90" end_scan="90" precursor_neutral_mass="1043.364176" assumed_charge="2" index="180" retention_time_sec="825.5"> <search_result> <search_hit hit_rank="1" peptide="SQQYEQAAD" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="16" calc_neutral_pep_mass="1041.377466" massdiff="1.986710" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="100"> <modification_info modified_peptide="SQ[129]Q[129]YEQ[129]AAD"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.360"/> <search_score name="deltacn" value="0.134"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="18.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.63E+000"/> </search_hit> <search_hit hit_rank="2" peptide="DEAQCCEK" peptide_prev_aa="Q" peptide_next_aa="G" protein="XXX_gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="1040.342677" massdiff="3.021499" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="100"> <modification_info modified_peptide="DEAQCCEK"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.312"/> <search_score name="deltacn" value="0.031"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.6"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="8.99E+000"/> </search_hit> <search_hit hit_rank="3" peptide="AAQEYQQSD" peptide_prev_aa="R" peptide_next_aa="A" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1041.377466" massdiff="1.986710" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="100"> <modification_info modified_peptide="AAQ[129]EYQ[129]Q[129]SD"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.302"/> <search_score name="deltacn" value="0.259"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="9"/> <search_score name="expect" value="1.03E+001"/> </search_hit> <search_hit hit_rank="4" peptide="ECCQAEDK" peptide_prev_aa="Q" peptide_next_aa="G" protein="gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="14" calc_neutral_pep_mass="1040.342677" massdiff="3.021499" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="100"> <modification_info modified_peptide="ECCQAEDK"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="3" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.224"/> <search_score name="deltacn" value="0.086"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.00E+001"/> </search_hit> <search_hit hit_rank="5" peptide="EFQPCLSC" peptide_prev_aa="K" peptide_next_aa="P" protein="gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="1041.378335" massdiff="1.985842" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="100"> <modification_info modified_peptide="EFQPCLSC"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.205"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.1"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="3.90E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00091.00091.2" spectrumNativeID="sample=1 period=1 cycle=1229 experiment=3" start_scan="91" end_scan="91" precursor_neutral_mass="1419.590851" assumed_charge="2" index="181" retention_time_sec="827.6"> <search_result> <search_hit hit_rank="1" peptide="LNPEEGQMVEEK" peptide_prev_aa="E" peptide_next_aa="Y" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="22" calc_neutral_pep_mass="1419.607528" massdiff="-0.016677" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="302"> <modification_info modified_peptide="LN[115]PEEGQ[129]M[147]VEEK"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.308"/> <search_score name="deltacn" value="0.080"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.3"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.01E+001"/> </search_hit> <search_hit hit_rank="2" peptide="PAPEPPWHCGDR" peptide_prev_aa="P" peptide_next_aa="G" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="22" calc_neutral_pep_mass="1418.603734" massdiff="0.987117" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="302"> <modification_info modified_peptide="PAPEPPWHCGDR"> <mod_aminoacid_mass position="9" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.283"/> <search_score name="deltacn" value="0.129"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.9"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.48E+001"/> </search_hit> <search_hit hit_rank="3" peptide="IAHSQPAEMSCGK" peptide_prev_aa="L" peptide_next_aa="G" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="24" calc_neutral_pep_mass="1416.601352" massdiff="2.989499" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="302"> <modification_info modified_peptide="IAHSQ[129]PAEMSCGK"> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.247"/> <search_score name="deltacn" value="0.003"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.5"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="2.61E+001"/> </search_hit> <search_hit hit_rank="4" peptide="CTPQGYDALYTK" peptide_prev_aa="S" peptide_next_aa="Y" protein="XXX_gi|528968106|ref|XP_005212568.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="22" calc_neutral_pep_mass="1417.607148" massdiff="1.983703" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="302"> <modification_info modified_peptide="CTPQ[129]GYDALYTK"> <mod_aminoacid_mass position="1" mass="161.014665"/> <mod_aminoacid_mass position="4" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.246"/> <search_score name="deltacn" value="0.029"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.4"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.64E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QGAEGGGSAEGGGSQPA" peptide_prev_aa="R" peptide_next_aa="G" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="32" calc_neutral_pep_mass="1417.559346" massdiff="2.031505" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="302"> <modification_info modified_peptide="Q[129]GAEGGGSAEGGGSQ[129]PA"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="15" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.239"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="2.95E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00091.00091.3" spectrumNativeID="sample=1 period=1 cycle=1229 experiment=3" start_scan="91" end_scan="91" precursor_neutral_mass="2129.386276" assumed_charge="3" index="182" retention_time_sec="827.6"> <search_result> <search_hit hit_rank="1" peptide="PVAVLLLLLIIGVMVIIWR" peptide_prev_aa="T" peptide_next_aa="Q" protein="gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="72" calc_neutral_pep_mass="2130.373047" massdiff="-0.986770" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="4"> <search_score name="xcorr" value="0.096"/> <search_score name="deltacn" value="0.542"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.92E+002"/> </search_hit> <search_hit hit_rank="2" peptide="WIIVMVGIILLLLLVAVPR" peptide_prev_aa="T" peptide_next_aa="Q" protein="XXX_gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="72" calc_neutral_pep_mass="2130.373047" massdiff="-0.986770" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="4"> <search_score name="xcorr" value="0.044"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.34E+002"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00092.00092.2" spectrumNativeID="sample=1 period=1 cycle=1229 experiment=4" start_scan="92" end_scan="92" precursor_neutral_mass="1663.688616" assumed_charge="2" index="183" retention_time_sec="829.7"> <search_result> <search_hit hit_rank="1" peptide="VLCQCALSQEPEAR" peptide_prev_aa="S" peptide_next_aa="T" protein="XXX_gi|87196497|ref|NP_776354.2|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="26" calc_neutral_pep_mass="1663.706940" massdiff="-0.018324" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="224"> <modification_info modified_peptide="VLCQ[129]CALSQ[129]EPEAR"> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.736"/> <search_score name="deltacn" value="0.455"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.0"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="KMMETFCDELSVR" peptide_prev_aa="V" peptide_next_aa="S" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="24" calc_neutral_pep_mass="1661.709901" massdiff="1.978715" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="224"> <modification_info modified_peptide="KM[147]METFCDELSVR"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.401"/> <search_score name="deltacn" value="0.283"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.8"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="3" peptide="IISEESSSVHEMTNS" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|27806963|ref|NP_776953.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="28" calc_neutral_pep_mass="1664.719931" massdiff="-1.031315" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="224"> <modification_info modified_peptide="IISEESSSVHEM[147]TNS"> <mod_aminoacid_mass position="12" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.288"/> <search_score name="deltacn" value="0.262"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="7.31E+000"/> </search_hit> <search_hit hit_rank="4" peptide="KMMETFCDELSVR" peptide_prev_aa="V" peptide_next_aa="S" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="24" calc_neutral_pep_mass="1661.709901" massdiff="1.978715" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="224"> <modification_info modified_peptide="KMM[147]ETFCDELSVR"> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.212"/> <search_score name="deltacn" value="0.007"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="2.74E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QPPSNMHETLDGYR" peptide_prev_aa="L" peptide_next_aa="K" protein="gi|528968108|ref|XP_005212569.1|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="26" calc_neutral_pep_mass="1661.699136" massdiff="1.989479" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="224"> <modification_info modified_peptide="Q[129]PPSN[115]M[147]HETLDGYR"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.211"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="2.81E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00092.00092.3" spectrumNativeID="sample=1 period=1 cycle=1229 experiment=4" start_scan="92" end_scan="92" precursor_neutral_mass="2495.532923" assumed_charge="3" index="184" retention_time_sec="829.7"> <search_result> <search_hit hit_rank="1" peptide="MKRLPLIVICESLAVLGLLVLK" peptide_prev_aa="W" peptide_next_aa="T" protein="XXX_gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="84" calc_neutral_pep_mass="2494.499432" massdiff="1.033491" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="2"> <modification_info modified_peptide="M[147]KRLPLIVICESLAVLGLLVLK"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.170"/> <search_score name="deltacn" value="0.979"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.02E+002"/> </search_hit> <search_hit hit_rank="2" peptide="LVLLGLVALSECIVILPLRKMK" peptide_prev_aa="W" peptide_next_aa="T" protein="gi|28849955|ref|NP_788795.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="84" calc_neutral_pep_mass="2494.499432" massdiff="1.033491" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="2"> <modification_info modified_peptide="LVLLGLVALSECIVILPLRKM[147]K"> <mod_aminoacid_mass position="12" mass="161.014665"/> <mod_aminoacid_mass position="21" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.004"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="5.74E+002"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00093.00093.2" spectrumNativeID="sample=1 period=1 cycle=1229 experiment=5" start_scan="93" end_scan="93" precursor_neutral_mass="1265.530040" assumed_charge="2" index="185" retention_time_sec="831.8"> <search_result> <search_hit hit_rank="1" peptide="MAEAESLETAAE" peptide_prev_aa="K" peptide_next_aa="H" protein="gi|528968104|ref|XP_005212567.1|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="22" calc_neutral_pep_mass="1266.528548" massdiff="-0.998508" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="338"> <modification_info modified_peptide="M[147]AEAESLETAAE"> <mod_aminoacid_mass position="1" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.319"/> <search_score name="deltacn" value="0.280"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.74E+000"/> </search_hit> <search_hit hit_rank="2" peptide="QYMQPNILNQ" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1266.543805" massdiff="-1.013765" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="338"> <modification_info modified_peptide="Q[129]YM[147]Q[129]PNILN[115]Q"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.230"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.78E+001"/> </search_hit> <search_hit hit_rank="3" peptide="QYMQPNILNQ" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1266.543805" massdiff="-1.013765" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="338"> <modification_info modified_peptide="Q[129]YM[147]Q[129]PNILNQ[129]"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.230"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.78E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QYMQPNILNQ" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1266.543805" massdiff="-1.013765" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="338"> <modification_info modified_peptide="QYM[147]Q[129]PN[115]ILNQ[129]"> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="115.026943"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.229"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.81E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QYMQPNILNQ" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1266.543805" massdiff="-1.013765" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="338"> <modification_info modified_peptide="QYM[147]Q[129]PN[115]ILN[115]Q"> <mod_aminoacid_mass position="3" mass="147.035385"/> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.229"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.81E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00093.00093.3" spectrumNativeID="sample=1 period=1 cycle=1229 experiment=5" start_scan="93" end_scan="93" precursor_neutral_mass="1898.295060" assumed_charge="3" index="186" retention_time_sec="831.8"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00094.00094.2" spectrumNativeID="sample=1 period=1 cycle=1230 experiment=2" start_scan="94" end_scan="94" precursor_neutral_mass="1626.721854" assumed_charge="2" index="187" retention_time_sec="834.5"> <search_result> <search_hit hit_rank="1" peptide="HEQLRQQQEEMR" peptide_prev_aa="D" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="22" calc_neutral_pep_mass="1627.737253" massdiff="-1.015398" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="888"> <modification_info modified_peptide="HEQ[129]LRQQQEEM[147]R"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.465"/> <search_score name="deltacn" value="0.001"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.95E+001"/> </search_hit> <search_hit hit_rank="2" peptide="CHWPPEPAPPPSPVG" peptide_prev_aa="R" peptide_next_aa="D" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="28" calc_neutral_pep_mass="1624.734414" massdiff="1.987440" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="888"> <modification_info modified_peptide="CHWPPEPAPPPSPVG"> <mod_aminoacid_mass position="1" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.465"/> <search_score name="deltacn" value="0.018"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.9"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="1.96E+001"/> </search_hit> <search_hit hit_rank="3" peptide="QAAMPTWGAGSPSPDR" peptide_prev_aa="G" peptide_next_aa="F" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="30" calc_neutral_pep_mass="1627.741290" massdiff="-1.019435" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="888"> <search_score name="xcorr" value="0.457"/> <search_score name="deltacn" value="0.004"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.3"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="2.10E+001"/> </search_hit> <search_hit hit_rank="4" peptide="NQQPSLDQAHESIR" peptide_prev_aa="L" peptide_next_aa="Q" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="26" calc_neutral_pep_mass="1624.732894" massdiff="1.988960" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="888"> <modification_info modified_peptide="N[115]QQ[129]PSLDQ[129]AHESIR"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.455"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.13E+001"/> </search_hit> <search_hit hit_rank="5" peptide="NQQPSLDQAHESIR" peptide_prev_aa="L" peptide_next_aa="Q" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="26" calc_neutral_pep_mass="1624.732894" massdiff="1.988960" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="888"> <modification_info modified_peptide="NQ[129]Q[129]PSLDQ[129]AHESIR"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.455"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.13E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00094.00094.3" spectrumNativeID="sample=1 period=1 cycle=1230 experiment=2" start_scan="94" end_scan="94" precursor_neutral_mass="2440.082782" assumed_charge="3" index="188" retention_time_sec="834.5"> <search_result> <search_hit hit_rank="1" peptide="RLETMNQCWESVLQKTEER" peptide_prev_aa="S" peptide_next_aa="E" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="72" calc_neutral_pep_mass="2438.120610" massdiff="1.962171" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="834"> <modification_info modified_peptide="RLETMNQ[129]CWESVLQKTEER"> <mod_aminoacid_mass position="7" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.718"/> <search_score name="deltacn" value="0.165"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="7.24E+000"/> </search_hit> <search_hit hit_rank="2" peptide="RLETMNQCWESVLQKTEER" peptide_prev_aa="S" peptide_next_aa="E" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="72" calc_neutral_pep_mass="2438.120610" massdiff="1.962171" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="834"> <modification_info modified_peptide="RLETMN[115]QCWESVLQKTEER"> <mod_aminoacid_mass position="6" mass="115.026943"/> <mod_aminoacid_mass position="8" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.718"/> <search_score name="deltacn" value="0.165"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="7.24E+000"/> </search_hit> <search_hit hit_rank="3" peptide="PVQCESDVIMYIQECEGLIR" peptide_prev_aa="Q" peptide_next_aa="Q" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="76" calc_neutral_pep_mass="2441.080052" massdiff="-0.997270" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="834"> <modification_info modified_peptide="PVQ[129]CESDVIMYIQECEGLIR"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="15" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.599"/> <search_score name="deltacn" value="0.055"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.6"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.72E+001"/> </search_hit> <search_hit hit_rank="4" peptide="GIAGMGDLEDDLDALQSFMERR" peptide_prev_aa="V" peptide_next_aa="D" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="84" calc_neutral_pep_mass="2438.120609" massdiff="1.962172" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="834"> <search_score name="xcorr" value="0.566"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.9"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.19E+001"/> </search_hit> <search_hit hit_rank="5" peptide="GIAGMGDLEDDLDALQSFMERR" peptide_prev_aa="V" peptide_next_aa="D" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="84" calc_neutral_pep_mass="2439.104625" massdiff="0.978156" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="834"> <modification_info modified_peptide="GIAGMGDLEDDLDALQ[129]SFMERR"> <mod_aminoacid_mass position="16" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.564"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.9"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.23E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00095.00095.3" spectrumNativeID="sample=1 period=1 cycle=1230 experiment=3" start_scan="95" end_scan="95" precursor_neutral_mass="1836.731935" assumed_charge="3" index="189" retention_time_sec="836.6"> <search_result> <search_hit hit_rank="1" peptide="YLLFCMENSAEPEQS" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1833.743703" massdiff="2.988232" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="44"> <modification_info modified_peptide="YLLFCM[147]ENSAEPEQS"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.279"/> <search_score name="deltacn" value="0.115"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.06E+001"/> </search_hit> <search_hit hit_rank="2" peptide="QEPEASNEMCFLLYS" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1833.743703" massdiff="2.988232" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="44"> <modification_info modified_peptide="QEPEASNEM[147]CFLLYS"> <mod_aminoacid_mass position="9" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.247"/> <search_score name="deltacn" value="0.203"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="3.18E+001"/> </search_hit> <search_hit hit_rank="3" peptide="SMENEDKEETVAKMY" peptide_prev_aa="K" peptide_next_aa="I" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1834.760066" massdiff="1.971869" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="44"> <modification_info modified_peptide="SM[147]ENEDKEETVAKM[147]Y"> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="14" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.197"/> <search_score name="deltacn" value="0.005"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.8"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="6.26E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QEPEASNEMCFLLYS" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528969819|ref|XP_005213230.1|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="56" calc_neutral_pep_mass="1834.727719" massdiff="2.004216" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="44"> <modification_info modified_peptide="QEPEASN[115]EM[147]CFLLYS"> <mod_aminoacid_mass position="7" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="147.035385"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.196"/> <search_score name="deltacn" value="0.119"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.5"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="6.34E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ESEGKGCSMEAPQSHAK" peptide_prev_aa="I" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="64" calc_neutral_pep_mass="1833.750929" massdiff="2.981006" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="44"> <modification_info modified_peptide="ESEGKGCSMEAPQ[129]SHAK"> <mod_aminoacid_mass position="7" mass="161.014665"/> <mod_aminoacid_mass position="13" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.172"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.3"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="8.67E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00095.00095.2" spectrumNativeID="sample=1 period=1 cycle=1230 experiment=3" start_scan="95" end_scan="95" precursor_neutral_mass="1224.487957" assumed_charge="2" index="190" retention_time_sec="836.6"> <search_result> <search_hit hit_rank="1" peptide="DADQANCTEAK" peptide_prev_aa="E" peptide_next_aa="R" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1223.461212" massdiff="1.026744" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="174"> <modification_info modified_peptide="DADQ[129]ANCTEAK"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.389"/> <search_score name="deltacn" value="0.016"/> <search_score name="deltacnstar" value="0.001"/> <search_score name="spscore" value="8.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.35E+000"/> </search_hit> <search_hit hit_rank="2" peptide="DADQANCTEAK" peptide_prev_aa="E" peptide_next_aa="R" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1223.461212" massdiff="1.026744" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="174"> <modification_info modified_peptide="DADQAN[115]CTEAK"> <mod_aminoacid_mass position="6" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.389"/> <search_score name="deltacn" value="0.016"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.36E+000"/> </search_hit> <search_hit hit_rank="3" peptide="AETCNAQDADK" peptide_prev_aa="E" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1223.461212" massdiff="1.026744" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="174"> <modification_info modified_peptide="AETCNAQ[129]DADK"> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.383"/> <search_score name="deltacn" value="0.228"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.0"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.66E+000"/> </search_hit> <search_hit hit_rank="4" peptide="TEDSSSQMTPK" peptide_prev_aa="E" peptide_next_aa="G" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1225.513232" massdiff="-1.025275" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="174"> <modification_info modified_peptide="TEDSSSQM[147]TPK"> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.296"/> <search_score name="deltacn" value="0.039"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.6"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.21E+001"/> </search_hit> <search_hit hit_rank="5" peptide="AETCNAQDADK" peptide_prev_aa="E" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1223.461212" massdiff="1.026744" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="174"> <modification_info modified_peptide="AETCN[115]AQDADK"> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.284"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.2"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.42E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00096.00096.2" spectrumNativeID="sample=1 period=1 cycle=1231 experiment=2" start_scan="96" end_scan="96" precursor_neutral_mass="978.483054" assumed_charge="2" index="191" retention_time_sec="839.3"> <search_result> <search_hit hit_rank="1" peptide="FALADLQSD" peptide_prev_aa="K" peptide_next_aa="I" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="978.465826" massdiff="0.017227" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="788"> <search_score name="xcorr" value="0.500"/> <search_score name="deltacn" value="0.230"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="24.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.16E+000"/> </search_hit> <search_hit hit_rank="2" peptide="AQCLLDQK" peptide_prev_aa="L" peptide_next_aa="V" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="975.469532" massdiff="3.013522" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="788"> <modification_info modified_peptide="AQCLLDQK"> <mod_aminoacid_mass position="3" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.385"/> <search_score name="deltacn" value="0.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.0"/> <search_score name="sprank" value="19"/> <search_score name="expect" value="5.86E+000"/> </search_hit> <search_hit hit_rank="3" peptide="TNKDLTQR" peptide_prev_aa="S" peptide_next_aa="S" protein="XXX_gi|297486082|ref|XP_002695413.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="976.482540" massdiff="2.000514" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="788"> <modification_info modified_peptide="TN[115]KDLTQ[129]R"> <mod_aminoacid_mass position="2" mass="115.026943"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.385"/> <search_score name="deltacn" value="0.100"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="5.87E+000"/> </search_hit> <search_hit hit_rank="4" peptide="MQLPDVQK" peptide_prev_aa="E" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="975.458284" massdiff="3.024769" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="788"> <modification_info modified_peptide="M[147]Q[129]LPDVQ[129]K"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.347"/> <search_score name="deltacn" value="0.015"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.4"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.01E+001"/> </search_hit> <search_hit hit_rank="5" peptide="EKADPSSRS" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="975.462138" massdiff="3.020916" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="788"> <search_score name="xcorr" value="0.341"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.3"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.09E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00096.00096.3" spectrumNativeID="sample=1 period=1 cycle=1231 experiment=2" start_scan="96" end_scan="96" precursor_neutral_mass="1467.724581" assumed_charge="3" index="192" retention_time_sec="839.3"> <search_result> <search_hit hit_rank="1" peptide="TIFDTEIESTSPK" peptide_prev_aa="Y" peptide_next_aa="S" protein="gi|528968108|ref|XP_005212569.1|" num_tot_proteins="4" num_matched_ions="4" tot_num_ions="48" calc_neutral_pep_mass="1466.714055" massdiff="1.010525" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1084"> <search_score name="xcorr" value="0.849"/> <search_score name="deltacn" value="0.027"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="6.31E+000"/> </search_hit> <search_hit hit_rank="2" peptide="NVHLQHWLAMVT" peptide_prev_aa="K" peptide_next_aa="K" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1465.702371" massdiff="2.022209" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1084"> <modification_info modified_peptide="N[115]VHLQ[129]HWLAM[147]VT"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.826"/> <search_score name="deltacn" value="0.075"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.5"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="7.27E+000"/> </search_hit> <search_hit hit_rank="3" peptide="VLKYQENADSVLS" peptide_prev_aa="K" peptide_next_aa="D" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="48" calc_neutral_pep_mass="1465.730040" massdiff="1.994540" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1084"> <modification_info modified_peptide="VLKYQEN[115]ADSVLS"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.764"/> <search_score name="deltacn" value="0.134"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.8"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.07E+001"/> </search_hit> <search_hit hit_rank="4" peptide="VMDRTAELSSKQT" peptide_prev_aa="R" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="5" tot_num_ions="48" calc_neutral_pep_mass="1465.708259" massdiff="2.016322" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1084"> <modification_info modified_peptide="VMDRTAELSSKQ[129]T"> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.661"/> <search_score name="deltacn" value="0.029"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="14.0"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.03E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ETALNLAEELKSF" peptide_prev_aa="K" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="48" calc_neutral_pep_mass="1464.734791" massdiff="2.989789" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1084"> <modification_info modified_peptide="ETALN[115]LAEELKSF"> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.641"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.9"/> <search_score name="sprank" value="19"/> <search_score name="expect" value="2.29E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00097.00097.3" spectrumNativeID="sample=1 period=1 cycle=1234 experiment=2" start_scan="97" end_scan="97" precursor_neutral_mass="1545.710932" assumed_charge="3" index="193" retention_time_sec="843.0"> <search_result> <search_hit hit_rank="1" peptide="QYPGQTSPPQGQVR" peptide_prev_aa="G" peptide_next_aa="A" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1543.726686" massdiff="1.984246" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="624"> <modification_info modified_peptide="Q[129]YPGQTSPPQ[129]GQVR"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.669"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.5"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="7.11E+000"/> </search_hit> <search_hit hit_rank="2" peptide="QYPGQTSPPQGQVR" peptide_prev_aa="G" peptide_next_aa="A" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1543.726686" massdiff="1.984246" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="624"> <modification_info modified_peptide="Q[129]YPGQTSPPQGQ[129]VR"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.597"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="1.26E+001"/> </search_hit> <search_hit hit_rank="3" peptide="QYPGQTSPPQGQVR" peptide_prev_aa="G" peptide_next_aa="A" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1544.710702" massdiff="1.000230" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="624"> <modification_info modified_peptide="Q[129]YPGQ[129]TSPPQ[129]GQVR"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.595"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.5"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.28E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QYPGQTSPPQGQVR" peptide_prev_aa="G" peptide_next_aa="A" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1543.726686" massdiff="1.984246" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="624"> <modification_info modified_peptide="Q[129]YPGQ[129]TSPPQGQVR"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.582"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="1.42E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QYPGQTSPPQGQVR" peptide_prev_aa="G" peptide_next_aa="A" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="52" calc_neutral_pep_mass="1544.710702" massdiff="1.000230" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="624"> <modification_info modified_peptide="Q[129]YPGQTSPPQ[129]GQ[129]VR"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="129.042594"/> <mod_aminoacid_mass position="12" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.561"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.6"/> <search_score name="sprank" value="25"/> <search_score name="expect" value="1.68E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00097.00097.2" spectrumNativeID="sample=1 period=1 cycle=1234 experiment=2" start_scan="97" end_scan="97" precursor_neutral_mass="1030.473955" assumed_charge="2" index="194" retention_time_sec="843.0"> <search_result> <search_hit hit_rank="1" peptide="DAEPTTPGNK" peptide_prev_aa="A" peptide_next_aa="I" protein="XXX_gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1028.477454" massdiff="1.996501" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="312"> <search_score name="xcorr" value="0.508"/> <search_score name="deltacn" value="0.260"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.8"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.75E+000"/> </search_hit> <search_hit hit_rank="2" peptide="NCLSVASYI" peptide_prev_aa="K" peptide_next_aa="S" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1027.453214" massdiff="3.020741" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="312"> <modification_info modified_peptide="N[115]CLSVASYI"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="2" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.376"/> <search_score name="deltacn" value="0.017"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="1.26E+001"/> </search_hit> <search_hit hit_rank="3" peptide="FQAFMNNR" peptide_prev_aa="K" peptide_next_aa="K" protein="XXX_gi|528968106|ref|XP_005212568.1|" num_tot_proteins="2" num_matched_ions="0" tot_num_ions="14" calc_neutral_pep_mass="1027.454551" massdiff="3.019404" num_tol_term="2" num_missed_cleavages="0" num_matched_peptides="312"> <modification_info modified_peptide="FQAFMN[115]NR"> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.370"/> <search_score name="deltacn" value="0.044"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="18"/> <search_score name="expect" value="1.36E+001"/> </search_hit> <search_hit hit_rank="4" peptide="EQISEQLNA" peptide_prev_aa="K" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="1031.477120" massdiff="-1.003165" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="312"> <modification_info modified_peptide="EQISEQLN[115]A"> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.353"/> <search_score name="deltacn" value="0.075"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="18"/> <search_score name="expect" value="1.64E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QANLMNPDK" peptide_prev_aa="I" peptide_next_aa="Q" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1031.459362" massdiff="-0.985407" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="312"> <modification_info modified_peptide="Q[129]AN[115]LMNPDK"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.327"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.0"/> <search_score name="sprank" value="13"/> <search_score name="expect" value="2.22E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00098.00098.2" spectrumNativeID="sample=1 period=1 cycle=1235 experiment=2" start_scan="98" end_scan="98" precursor_neutral_mass="1333.706992" assumed_charge="2" index="195" retention_time_sec="845.6"> <search_result> <search_hit hit_rank="1" peptide="LRSALSPESGYR" peptide_prev_aa="V" peptide_next_aa="N" protein="XXX_gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="22" calc_neutral_pep_mass="1334.694263" massdiff="-0.987271" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="678"> <search_score name="xcorr" value="0.340"/> <search_score name="deltacn" value="0.004"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.56E+001"/> </search_hit> <search_hit hit_rank="2" peptide="AVEKEGTKQGGAR" peptide_prev_aa="H" peptide_next_aa="E" protein="gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="24" calc_neutral_pep_mass="1330.684093" massdiff="3.022899" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="678"> <modification_info modified_peptide="AVEKEGTKQ[129]GGAR"> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.339"/> <search_score name="deltacn" value="0.122"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.8"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="1.59E+001"/> </search_hit> <search_hit hit_rank="3" peptide="AKGIEEDLVSFK" peptide_prev_aa="V" peptide_next_aa="I" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="22" calc_neutral_pep_mass="1334.708182" massdiff="-1.001190" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="678"> <search_score name="xcorr" value="0.298"/> <search_score name="deltacn" value="0.027"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="2.66E+001"/> </search_hit> <search_hit hit_rank="4" peptide="QQQEKESSLKK" peptide_prev_aa="L" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1331.704494" massdiff="2.002498" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="678"> <search_score name="xcorr" value="0.290"/> <search_score name="deltacn" value="0.014"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="2.93E+001"/> </search_hit> <search_hit hit_rank="5" peptide="AVFLPATTEIWS" peptide_prev_aa="K" peptide_next_aa="W" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="22" calc_neutral_pep_mass="1333.691804" massdiff="0.015188" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="678"> <search_score name="xcorr" value="0.285"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="3.09E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00098.00098.3" spectrumNativeID="sample=1 period=1 cycle=1235 experiment=2" start_scan="98" end_scan="98" precursor_neutral_mass="2000.560488" assumed_charge="3" index="196" retention_time_sec="845.6"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00099.00099.3" spectrumNativeID="sample=1 period=1 cycle=1236 experiment=2" start_scan="99" end_scan="99" precursor_neutral_mass="1443.659627" assumed_charge="3" index="197" retention_time_sec="848.3"> <search_result> <search_hit hit_rank="1" peptide="SDAITQEFMDLR" peptide_prev_aa="S" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="44" calc_neutral_pep_mass="1440.655480" massdiff="3.004147" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="620"> <modification_info modified_peptide="SDAITQEFM[147]DLR"> <mod_aminoacid_mass position="9" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.721"/> <search_score name="deltacn" value="0.168"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="13.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="3.04E+000"/> </search_hit> <search_hit hit_rank="2" peptide="EDFAKPVYTEDK" peptide_prev_aa="P" peptide_next_aa="L" protein="XXX_gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1440.677276" massdiff="2.982351" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="620"> <search_score name="xcorr" value="0.600"/> <search_score name="deltacn" value="0.053"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="9.6"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="8.67E+000"/> </search_hit> <search_hit hit_rank="3" peptide="NKPGVYTKVCNY" peptide_prev_aa="K" peptide_next_aa="V" protein="gi|528903801|ref|XP_871686.4|" num_tot_proteins="3" num_matched_ions="5" tot_num_ions="44" calc_neutral_pep_mass="1443.670417" massdiff="-0.010791" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="620"> <modification_info modified_peptide="N[115]KPGVYTKVCNY"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.568"/> <search_score name="deltacn" value="0.033"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="18.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.14E+001"/> </search_hit> <search_hit hit_rank="4" peptide="NRKQEESAEAGAPG" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1442.674984" massdiff="0.984642" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="620"> <search_score name="xcorr" value="0.549"/> <search_score name="deltacn" value="0.056"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.2"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="1.34E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ELSDALQMHPMR" peptide_prev_aa="V" peptide_next_aa="G" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1442.664605" massdiff="0.995022" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="620"> <modification_info modified_peptide="ELSDALQM[147]HPMR"> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.518"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.2"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.76E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00099.00099.2" spectrumNativeID="sample=1 period=1 cycle=1236 experiment=2" start_scan="99" end_scan="99" precursor_neutral_mass="962.439751" assumed_charge="2" index="198" retention_time_sec="848.3"> <search_result> <search_hit hit_rank="1" peptide="YNNSVDPR" peptide_prev_aa="G" peptide_next_aa="I" protein="gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="963.441009" massdiff="-1.001257" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="642"> <search_score name="xcorr" value="0.600"/> <search_score name="deltacn" value="0.241"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="16.4"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="4.23E+000"/> </search_hit> <search_hit hit_rank="2" peptide="EQVDPLQM" peptide_prev_aa="K" peptide_next_aa="K" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="959.426998" massdiff="3.012753" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="642"> <modification_info modified_peptide="EQ[129]VDPLQM"> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.456"/> <search_score name="deltacn" value="0.025"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="20"/> <search_score name="expect" value="1.74E+001"/> </search_hit> <search_hit hit_rank="3" peptide="SSAAGGQGSSR" peptide_prev_aa="E" peptide_next_aa="R" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="963.436986" massdiff="-0.997235" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="642"> <search_score name="xcorr" value="0.444"/> <search_score name="deltacn" value="0.009"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.2"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="1.94E+001"/> </search_hit> <search_hit hit_rank="4" peptide="SQENLENK" peptide_prev_aa="I" peptide_next_aa="E" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="14" calc_neutral_pep_mass="961.435255" massdiff="1.004496" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="642"> <modification_info modified_peptide="SQENLEN[115]K"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.440"/> <search_score name="deltacn" value="0.031"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="28.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.02E+001"/> </search_hit> <search_hit hit_rank="5" peptide="PPSAEGNHR" peptide_prev_aa="L" peptide_next_aa="V" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="963.452242" massdiff="-1.012491" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="642"> <search_score name="xcorr" value="0.426"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.3"/> <search_score name="sprank" value="15"/> <search_score name="expect" value="2.31E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00100.00100.2" spectrumNativeID="sample=1 period=1 cycle=1236 experiment=3" start_scan="100" end_scan="100" precursor_neutral_mass="1345.557801" assumed_charge="2" index="199" retention_time_sec="850.4"> <search_result> <search_hit hit_rank="1" peptide="KMSEKETSSGED" peptide_prev_aa="R" peptide_next_aa="Q" protein="gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="22" calc_neutral_pep_mass="1342.555825" massdiff="3.001976" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="240"> <modification_info modified_peptide="KM[147]SEKETSSGED"> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.389"/> <search_score name="deltacn" value="0.124"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="4.91E+000"/> </search_hit> <search_hit hit_rank="2" peptide="EQTIADSSSLMF" peptide_prev_aa="R" peptide_next_aa="M" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="22" calc_neutral_pep_mass="1344.575499" massdiff="0.982303" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="240"> <modification_info modified_peptide="EQ[129]TIADSSSLM[147]F"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="11" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.341"/> <search_score name="deltacn" value="0.034"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="9.29E+000"/> </search_hit> <search_hit hit_rank="3" peptide="LDQMVFFWED" peptide_prev_aa="K" peptide_next_aa="I" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1345.553641" massdiff="0.004160" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="240"> <modification_info modified_peptide="LDQ[129]M[147]VFFWED"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.329"/> <search_score name="deltacn" value="0.003"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.08E+001"/> </search_hit> <search_hit hit_rank="4" peptide="GAEGGGSAEGGGSQPQ" peptide_prev_aa="R" peptide_next_aa="A" protein="XXX_gi|528961840|ref|XP_005211303.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="30" calc_neutral_pep_mass="1344.554201" massdiff="1.003601" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="240"> <search_score name="xcorr" value="0.328"/> <search_score name="deltacn" value="0.134"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="7.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.09E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LDQMVFFWED" peptide_prev_aa="K" peptide_next_aa="I" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1344.569625" massdiff="0.988176" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="240"> <modification_info modified_peptide="LDQM[147]VFFWED"> <mod_aminoacid_mass position="4" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.284"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.5"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.95E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00100.00100.3" spectrumNativeID="sample=1 period=1 cycle=1236 experiment=3" start_scan="100" end_scan="100" precursor_neutral_mass="2018.336702" assumed_charge="3" index="200" retention_time_sec="850.4"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00101.00101.2" spectrumNativeID="sample=1 period=1 cycle=1238 experiment=2" start_scan="101" end_scan="101" precursor_neutral_mass="909.293614" assumed_charge="2" index="201" retention_time_sec="853.6"> <search_result> <search_hit hit_rank="1" peptide="NQDDCEK" peptide_prev_aa="L" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="12" calc_neutral_pep_mass="909.302193" massdiff="-0.008578" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="14"> <modification_info modified_peptide="NQ[129]DDCEK"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.086"/> <search_score name="deltacn" value="0.690"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.21E+002"/> </search_hit> <search_hit hit_rank="2" peptide="NQDDCEK" peptide_prev_aa="L" peptide_next_aa="R" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="12" calc_neutral_pep_mass="909.302193" massdiff="-0.008578" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="14"> <modification_info modified_peptide="N[115]QDDCEK"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.086"/> <search_score name="deltacn" value="0.690"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.21E+002"/> </search_hit> <search_hit hit_rank="3" peptide="MCCHER" peptide_prev_aa="V" peptide_next_aa="C" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="0" tot_num_ions="10" calc_neutral_pep_mass="909.277894" massdiff="0.015720" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="14"> <modification_info modified_peptide="M[147]CCHER"> <mod_aminoacid_mass position="1" mass="147.035385"/> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="3" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.027"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="3.82E+002"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00101.00101.3" spectrumNativeID="sample=1 period=1 cycle=1238 experiment=2" start_scan="101" end_scan="101" precursor_neutral_mass="1363.940421" assumed_charge="3" index="202" retention_time_sec="853.6"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00102.00102.3" spectrumNativeID="sample=1 period=1 cycle=1239 experiment=2" start_scan="102" end_scan="102" precursor_neutral_mass="1455.590540" assumed_charge="3" index="203" retention_time_sec="856.2"> <search_result> <search_hit hit_rank="1" peptide="GKCCLTYCFNK" peptide_prev_aa="C" peptide_next_aa="P" protein="gi|528968221|ref|XP_005212615.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="40" calc_neutral_pep_mass="1453.556377" massdiff="2.034163" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="378"> <modification_info modified_peptide="GKCCLTYCFN[115]K"> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="4" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="161.014665"/> <mod_aminoacid_mass position="10" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.445"/> <search_score name="deltacn" value="0.083"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.7"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="9.63E+000"/> </search_hit> <search_hit hit_rank="2" peptide="IQNSCRSVFQGGT" peptide_prev_aa="K" peptide_next_aa="E" protein="gi|529012038|ref|XP_005226889.1|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="48" calc_neutral_pep_mass="1456.614026" massdiff="-1.023486" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="378"> <modification_info modified_peptide="IQ[129]N[115]SCRSVFQ[129]GGT"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.408"/> <search_score name="deltacn" value="0.029"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.6"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.41E+001"/> </search_hit> <search_hit hit_rank="3" peptide="EWANNMEDISKN" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1452.571491" massdiff="3.019049" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="378"> <modification_info modified_peptide="EWAN[115]N[115]MEDISKN[115]"> <mod_aminoacid_mass position="4" mass="115.026943"/> <mod_aminoacid_mass position="5" mass="115.026943"/> <mod_aminoacid_mass position="12" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.396"/> <search_score name="deltacn" value="0.036"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.8"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.59E+001"/> </search_hit> <search_hit hit_rank="4" peptide="LVRAQQCVCCR" peptide_prev_aa="V" peptide_next_aa="T" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="40" calc_neutral_pep_mass="1453.599973" massdiff="1.990567" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="378"> <modification_info modified_peptide="LVRAQ[129]Q[129]CVCCR"> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="161.014665"/> <mod_aminoacid_mass position="9" mass="161.014665"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.382"/> <search_score name="deltacn" value="0.022"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.8"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="1.84E+001"/> </search_hit> <search_hit hit_rank="5" peptide="QDAGLSPQHEWW" peptide_prev_aa="R" peptide_next_aa="F" protein="XXX_gi|528995523|ref|XP_002695913.2|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="44" calc_neutral_pep_mass="1454.610260" massdiff="0.980280" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="378"> <modification_info modified_peptide="Q[129]DAGLSPQ[129]HEWW"> <mod_aminoacid_mass position="1" mass="129.042594"/> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.374"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="2.01E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00102.00102.2" spectrumNativeID="sample=1 period=1 cycle=1239 experiment=2" start_scan="102" end_scan="102" precursor_neutral_mass="970.393693" assumed_charge="2" index="204" retention_time_sec="856.2"> <search_result> <search_hit hit_rank="1" peptide="DAIWSMET" peptide_prev_aa="R" peptide_next_aa="Y" protein="XXX_gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="967.395683" massdiff="2.998010" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="142"> <modification_info modified_peptide="DAIWSM[147]ET"> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.356"/> <search_score name="deltacn" value="0.132"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.4"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="2.39E+000"/> </search_hit> <search_hit hit_rank="2" peptide="NMEDISKN" peptide_prev_aa="K" peptide_next_aa="A" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="967.380428" massdiff="3.013265" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="142"> <modification_info modified_peptide="N[115]M[147]EDISKN[115]"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="2" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.309"/> <search_score name="deltacn" value="0.217"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="5.07E+000"/> </search_hit> <search_hit hit_rank="3" peptide="EMSWIADT" peptide_prev_aa="R" peptide_next_aa="Y" protein="gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="967.395683" massdiff="2.998010" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="142"> <modification_info modified_peptide="EM[147]SWIADT"> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.242"/> <search_score name="deltacn" value="0.009"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.4"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.48E+001"/> </search_hit> <search_hit hit_rank="4" peptide="NSCISIFQ" peptide_prev_aa="K" peptide_next_aa="G" protein="gi|119924469|ref|XP_001252524.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="14" calc_neutral_pep_mass="970.395365" massdiff="-0.001672" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="142"> <modification_info modified_peptide="N[115]SCISIFQ[129]"> <mod_aminoacid_mass position="1" mass="115.026943"/> <mod_aminoacid_mass position="3" mass="161.014665"/> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.240"/> <search_score name="deltacn" value="0.033"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.53E+001"/> </search_hit> <search_hit hit_rank="5" peptide="SSTEKESMG" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="970.391326" massdiff="0.002367" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="142"> <modification_info modified_peptide="SSTEKESM[147]G"> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.232"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.6"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.73E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00103.00103.3" spectrumNativeID="sample=1 period=1 cycle=1281 experiment=2" start_scan="103" end_scan="103" precursor_neutral_mass="1772.214200" assumed_charge="3" index="205" retention_time_sec="880.3"> <search_result> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00103.00103.2" spectrumNativeID="sample=1 period=1 cycle=1281 experiment=2" start_scan="103" end_scan="103" precursor_neutral_mass="1181.476133" assumed_charge="2" index="206" retention_time_sec="880.3"> <search_result> <search_hit hit_rank="1" peptide="EDQAMSDQLK" peptide_prev_aa="L" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1181.475785" massdiff="0.000348" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="198"> <modification_info modified_peptide="EDQ[129]AM[147]SDQ[129]LK"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.393"/> <search_score name="deltacn" value="0.059"/> <search_score name="deltacnstar" value="0.019"/> <search_score name="spscore" value="10.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.12E+000"/> </search_hit> <search_hit hit_rank="2" peptide="EDQAMSDQLK" peptide_prev_aa="L" peptide_next_aa="E" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1180.491769" massdiff="0.984364" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="198"> <modification_info modified_peptide="EDQ[129]AM[147]SDQLK"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="5" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.386"/> <search_score name="deltacn" value="0.041"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.1"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.27E+000"/> </search_hit> <search_hit hit_rank="3" peptide="PCETLQNYR" peptide_prev_aa="S" peptide_next_aa="E" protein="XXX_gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1182.486305" massdiff="-1.010172" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="198"> <modification_info modified_peptide="PCETLQ[129]N[115]YR"> <mod_aminoacid_mass position="2" mass="161.014665"/> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.370"/> <search_score name="deltacn" value="0.038"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.3"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.66E+000"/> </search_hit> <search_hit hit_rank="4" peptide="QSNDESSLSES" peptide_prev_aa="K" peptide_next_aa="V" protein="XXX_gi|358418103|ref|XP_600387.4|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="20" calc_neutral_pep_mass="1181.468405" massdiff="0.007728" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="198"> <search_score name="xcorr" value="0.356"/> <search_score name="deltacn" value="0.373"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="11.6"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.12E+000"/> </search_hit> <search_hit hit_rank="5" peptide="LTGEEELMQD" peptide_prev_aa="R" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1180.480536" massdiff="0.995597" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="198"> <modification_info modified_peptide="LTGEEELM[147]Q[129]D"> <mod_aminoacid_mass position="8" mass="147.035385"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.223"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.6"/> <search_score name="sprank" value="11"/> <search_score name="expect" value="2.02E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00104.00104.3" spectrumNativeID="sample=1 period=1 cycle=1283 experiment=2" start_scan="104" end_scan="104" precursor_neutral_mass="1770.954827" assumed_charge="3" index="207" retention_time_sec="883.5"> <search_result> <search_hit hit_rank="1" peptide="EQRLIQRIQSPASSR" peptide_prev_aa="C" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1769.938411" massdiff="1.016417" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="396"> <modification_info modified_peptide="EQ[129]RLIQRIQ[129]SPASSR"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="9" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.393"/> <search_score name="deltacn" value="0.009"/> <search_score name="deltacnstar" value="0.001"/> <search_score name="spscore" value="3.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.18E+001"/> </search_hit> <search_hit hit_rank="2" peptide="EQRLIQRIQSPASSR" peptide_prev_aa="C" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1768.954395" massdiff="2.000433" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="396"> <modification_info modified_peptide="EQ[129]RLIQRIQSPASSR"> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.393"/> <search_score name="deltacn" value="0.008"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.0"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.19E+001"/> </search_hit> <search_hit hit_rank="3" peptide="VPECLYALPGLRRLN" peptide_prev_aa="R" peptide_next_aa="L" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1770.945076" massdiff="0.009751" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="396"> <modification_info modified_peptide="VPECLYALPGLRRLN"> <mod_aminoacid_mass position="4" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.390"/> <search_score name="deltacn" value="0.032"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.8"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="1.23E+001"/> </search_hit> <search_hit hit_rank="4" peptide="ADQPELINLEKASKGR" peptide_prev_aa="S" peptide_next_aa="D" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="60" calc_neutral_pep_mass="1768.931928" massdiff="2.022899" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="396"> <modification_info modified_peptide="ADQ[129]PELINLEKASKGR"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.377"/> <search_score name="deltacn" value="0.079"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.6"/> <search_score name="sprank" value="14"/> <search_score name="expect" value="1.43E+001"/> </search_hit> <search_hit hit_rank="5" peptide="EQRLIQRIQSPASSR" peptide_prev_aa="C" peptide_next_aa="T" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1769.938411" massdiff="1.016417" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="396"> <modification_info modified_peptide="EQ[129]RLIQ[129]RIQSPASSR"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.347"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="2.02E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00104.00104.2" spectrumNativeID="sample=1 period=1 cycle=1283 experiment=2" start_scan="104" end_scan="104" precursor_neutral_mass="1180.636551" assumed_charge="2" index="208" retention_time_sec="883.5"> <search_result> <search_hit hit_rank="1" peptide="ANWRPAQPLK" peptide_prev_aa="L" peptide_next_aa="N" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1180.635292" massdiff="0.001259" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="282"> <modification_info modified_peptide="ANWRPAQ[129]PLK"> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.386"/> <search_score name="deltacn" value="0.409"/> <search_score name="deltacnstar" value="0.069"/> <search_score name="spscore" value="3.7"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.49E+000"/> </search_hit> <search_hit hit_rank="2" peptide="ANWRPAQPLK" peptide_prev_aa="L" peptide_next_aa="N" protein="gi|30466252|ref|NP_848667.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1180.635292" massdiff="0.001259" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="282"> <modification_info modified_peptide="AN[115]WRPAQPLK"> <mod_aminoacid_mass position="2" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.360"/> <search_score name="deltacn" value="0.365"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.7"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="2.33E+000"/> </search_hit> <search_hit hit_rank="3" peptide="LKYDQERLN" peptide_prev_aa="R" peptide_next_aa="T" protein="XXX_gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1177.609137" massdiff="3.027415" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="282"> <search_score name="xcorr" value="0.228"/> <search_score name="deltacn" value="0.089"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.08E+001"/> </search_hit> <search_hit hit_rank="4" peptide="SVQPVKRTYT" peptide_prev_aa="R" peptide_next_aa="P" protein="XXX_gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="18" calc_neutral_pep_mass="1178.629538" massdiff="2.007013" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="282"> <modification_info modified_peptide="SVQ[129]PVKRTYT"> <mod_aminoacid_mass position="3" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.208"/> <search_score name="deltacn" value="0.088"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.5"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="2.91E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LREQDYKLN" peptide_prev_aa="R" peptide_next_aa="T" protein="gi|528920173|ref|XP_001788336.2|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1177.609137" massdiff="3.027415" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="282"> <search_score name="xcorr" value="0.190"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.4"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="3.96E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00105.00105.3" spectrumNativeID="sample=1 period=1 cycle=1428 experiment=2" start_scan="105" end_scan="105" precursor_neutral_mass="1752.882718" assumed_charge="3" index="209" retention_time_sec="961.1"> <search_result> <search_hit hit_rank="1" peptide="PVLEMYSKLREQMK" peptide_prev_aa="L" peptide_next_aa="T" protein="gi|528968108|ref|XP_005212569.1|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1750.910998" massdiff="1.971720" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1628"> <search_score name="xcorr" value="0.608"/> <search_score name="deltacn" value="0.010"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="6.70E+001"/> </search_hit> <search_hit hit_rank="2" peptide="WHRVIAQLETRQSE" peptide_prev_aa="R" peptide_next_aa="L" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1752.890732" massdiff="-0.008014" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1628"> <modification_info modified_peptide="WHRVIAQ[129]LETRQSE"> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.602"/> <search_score name="deltacn" value="0.037"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.9"/> <search_score name="sprank" value="8"/> <search_score name="expect" value="6.92E+001"/> </search_hit> <search_hit hit_rank="3" peptide="EGSGTVFGRLQLSGTSR" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="64" calc_neutral_pep_mass="1751.880227" massdiff="1.002491" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="1628"> <modification_info modified_peptide="EGSGTVFGRLQ[129]LSGTSR"> <mod_aminoacid_mass position="11" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.579"/> <search_score name="deltacn" value="0.004"/> <search_score name="deltacnstar" value="0.003"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="25"/> <search_score name="expect" value="7.81E+001"/> </search_hit> <search_hit hit_rank="4" peptide="EGSGTVFGRLQLSGTSR" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="64" calc_neutral_pep_mass="1750.896211" massdiff="1.986507" num_tol_term="2" num_missed_cleavages="1" num_matched_peptides="1628"> <search_score name="xcorr" value="0.577"/> <search_score name="deltacn" value="0.001"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.9"/> <search_score name="sprank" value="25"/> <search_score name="expect" value="7.90E+001"/> </search_hit> <search_hit hit_rank="5" peptide="LRQQDPPIGEKDQII" peptide_prev_aa="K" peptide_next_aa="L" protein="XXX_gi|528918160|ref|XP_005195085.1|" num_tot_proteins="26" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1751.894146" massdiff="0.988572" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="1628"> <modification_info modified_peptide="LRQ[129]Q[129]DPPIGEKDQ[129]II"> <mod_aminoacid_mass position="3" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="13" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.577"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="4.9"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="7.91E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00105.00105.2" spectrumNativeID="sample=1 period=1 cycle=1428 experiment=2" start_scan="105" end_scan="105" precursor_neutral_mass="1168.588479" assumed_charge="2" index="210" retention_time_sec="961.1"> <search_result> <search_hit hit_rank="1" peptide="RQIMRTAMK" peptide_prev_aa="A" peptide_next_aa="Y" protein="gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1166.589969" massdiff="1.998510" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="862"> <modification_info modified_peptide="RQ[129]IM[147]RTAM[147]K"> <mod_aminoacid_mass position="2" mass="129.042594"/> <mod_aminoacid_mass position="4" mass="147.035385"/> <mod_aminoacid_mass position="8" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.411"/> <search_score name="deltacn" value="0.051"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.9"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.97E+000"/> </search_hit> <search_hit hit_rank="2" peptide="VMAEDGLLFR" peptide_prev_aa="Y" peptide_next_aa="G" protein="gi|139948503|ref|NP_001077142.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1165.580130" massdiff="3.008349" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="862"> <modification_info modified_peptide="VM[147]AEDGLLFR"> <mod_aminoacid_mass position="2" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.390"/> <search_score name="deltacn" value="0.240"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.1"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="4.13E+000"/> </search_hit> <search_hit hit_rank="3" peptide="YQLEELAFR" peptide_prev_aa="Y" peptide_next_aa="V" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1167.592424" massdiff="0.996055" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="862"> <search_score name="xcorr" value="0.296"/> <search_score name="deltacn" value="0.056"/> <search_score name="deltacnstar" value="0.013"/> <search_score name="spscore" value="1.8"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.79E+001"/> </search_hit> <search_hit hit_rank="4" peptide="YQLEELAFR" peptide_prev_aa="Y" peptide_next_aa="V" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="1168.576440" massdiff="0.012039" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="862"> <modification_info modified_peptide="YQ[129]LEELAFR"> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.292"/> <search_score name="deltacn" value="0.043"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.8"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.91E+001"/> </search_hit> <search_hit hit_rank="5" peptide="PPPAPQSLSKM" peptide_prev_aa="R" peptide_next_aa="P" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="20" calc_neutral_pep_mass="1167.595780" massdiff="0.992698" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="862"> <modification_info modified_peptide="PPPAPQSLSKM[147]"> <mod_aminoacid_mass position="11" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.280"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.5"/> <search_score name="sprank" value="10"/> <search_score name="expect" value="2.33E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00106.00106.2" spectrumNativeID="sample=1 period=1 cycle=1580 experiment=2" start_scan="106" end_scan="106" precursor_neutral_mass="1064.509975" assumed_charge="2" index="211" retention_time_sec="1042.3"> <search_result> <search_hit hit_rank="1" peptide="AEAMKVREE" peptide_prev_aa="-" peptide_next_aa="S" protein="XXX_gi|528968108|ref|XP_005212569.1|" num_tot_proteins="4" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="1061.517544" massdiff="2.992431" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="724"> <search_score name="xcorr" value="0.568"/> <search_score name="deltacn" value="0.278"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="19.1"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="AATTMDNLVE" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1063.485576" massdiff="1.024400" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="724"> <search_score name="xcorr" value="0.410"/> <search_score name="deltacn" value="0.158"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="5.33E+000"/> </search_hit> <search_hit hit_rank="3" peptide="NMRDAALDR" peptide_prev_aa="E" peptide_next_aa="L" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="16" calc_neutral_pep_mass="1061.492393" massdiff="3.017583" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="724"> <modification_info modified_peptide="N[115]MRDAALDR"> <mod_aminoacid_mass position="1" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.346"/> <search_score name="deltacn" value="0.027"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.2"/> <search_score name="sprank" value="4"/> <search_score name="expect" value="1.29E+001"/> </search_hit> <search_hit hit_rank="4" peptide="EKGSQLQDR" peptide_prev_aa="Q" peptide_next_aa="W" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="1061.498918" massdiff="3.011057" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="724"> <modification_info modified_peptide="EKGSQ[129]LQ[129]DR"> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.336"/> <search_score name="deltacn" value="0.022"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="16.2"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.47E+001"/> </search_hit> <search_hit hit_rank="5" peptide="YGSEPSLASR" peptide_prev_aa="V" peptide_next_aa="L" protein="gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1065.509088" massdiff="-0.999113" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="724"> <search_score name="xcorr" value="0.329"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.6"/> <search_score name="sprank" value="16"/> <search_score name="expect" value="1.63E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00106.00106.3" spectrumNativeID="sample=1 period=1 cycle=1580 experiment=2" start_scan="106" end_scan="106" precursor_neutral_mass="1596.764963" assumed_charge="3" index="212" retention_time_sec="1042.3"> <search_result> <search_hit hit_rank="1" peptide="SVPIWNLEGKYYQ" peptide_prev_aa="R" peptide_next_aa="T" protein="XXX_gi|28849955|ref|NP_788795.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="48" calc_neutral_pep_mass="1596.782410" massdiff="-0.017447" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1192"> <modification_info modified_peptide="SVPIWN[115]LEGKYYQ"> <mod_aminoacid_mass position="6" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.672"/> <search_score name="deltacn" value="0.111"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="8.4"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="5.77E+000"/> </search_hit> <search_hit hit_rank="2" peptide="SEDNQGIVYAWVGR" peptide_prev_aa="E" peptide_next_aa="A" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1593.742336" massdiff="3.022627" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1192"> <modification_info modified_peptide="SEDN[115]QGIVYAWVGR"> <mod_aminoacid_mass position="4" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.597"/> <search_score name="deltacn" value="0.037"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.1"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.11E+001"/> </search_hit> <search_hit hit_rank="3" peptide="SEDNQGIVYAWVGR" peptide_prev_aa="E" peptide_next_aa="A" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="52" calc_neutral_pep_mass="1593.742336" massdiff="3.022627" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1192"> <modification_info modified_peptide="SEDNQ[129]GIVYAWVGR"> <mod_aminoacid_mass position="5" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.597"/> <search_score name="deltacn" value="0.037"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.1"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="1.11E+001"/> </search_hit> <search_hit hit_rank="4" peptide="DGHAGLNEAPEKLDK" peptide_prev_aa="T" peptide_next_aa="Q" protein="gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="56" calc_neutral_pep_mass="1593.763466" massdiff="3.001497" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1192"> <modification_info modified_peptide="DGHAGLN[115]EAPEKLDK"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.575"/> <search_score name="deltacn" value="0.046"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="6.5"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.35E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ALSQYPPTPCVFGR" peptide_prev_aa="A" peptide_next_aa="E" protein="XXX_gi|528993971|ref|XP_005219929.1|" num_tot_proteins="4" num_matched_ions="2" tot_num_ions="52" calc_neutral_pep_mass="1593.749730" massdiff="3.015233" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="1192"> <modification_info modified_peptide="ALSQ[129]YPPTPCVFGR"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="10" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.549"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.5"/> <search_score name="sprank" value="17"/> <search_score name="expect" value="1.69E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00107.00107.2" spectrumNativeID="sample=1 period=1 cycle=1583 experiment=2" start_scan="107" end_scan="107" precursor_neutral_mass="972.466522" assumed_charge="2" index="213" retention_time_sec="1045.9"> <search_result> <search_hit hit_rank="1" peptide="ALGSHVIDY" peptide_prev_aa="K" peptide_next_aa="T" protein="XXX_gi|32880221|ref|NP_872593.1|" num_tot_proteins="1" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="973.486896" massdiff="-1.020374" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="446"> <search_score name="xcorr" value="0.576"/> <search_score name="deltacn" value="0.055"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="24"/> <search_score name="expect" value="5.89E+000"/> </search_hit> <search_hit hit_rank="2" peptide="LGESNVQSH" peptide_prev_aa="K" peptide_next_aa="S" protein="XXX_gi|528953246|ref|XP_005208086.1|" num_tot_proteins="1" num_matched_ions="3" tot_num_ions="16" calc_neutral_pep_mass="969.451573" massdiff="3.014949" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="446"> <search_score name="xcorr" value="0.545"/> <search_score name="deltacn" value="0.070"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="14.7"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="7.78E+000"/> </search_hit> <search_hit hit_rank="3" peptide="ALDARDDAK" peptide_prev_aa="C" peptide_next_aa="Y" protein="XXX_gi|30794280|ref|NP_851335.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="16" calc_neutral_pep_mass="973.482873" massdiff="-1.016351" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="446"> <search_score name="xcorr" value="0.506"/> <search_score name="deltacn" value="0.030"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.4"/> <search_score name="sprank" value="22"/> <search_score name="expect" value="1.09E+001"/> </search_hit> <search_hit hit_rank="4" peptide="IAADIEDVQ" peptide_prev_aa="R" peptide_next_aa="R" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="0" tot_num_ions="16" calc_neutral_pep_mass="972.476391" massdiff="-0.009869" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="446"> <search_score name="xcorr" value="0.491"/> <search_score name="deltacn" value="0.015"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.0"/> <search_score name="sprank" value="24"/> <search_score name="expect" value="1.24E+001"/> </search_hit> <search_hit hit_rank="5" peptide="TQQQENPK" peptide_prev_aa="M" peptide_next_aa="F" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="14" calc_neutral_pep_mass="972.451239" massdiff="0.015283" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="446"> <modification_info modified_peptide="TQ[129]QQENPK"> <mod_aminoacid_mass position="2" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.484"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.2"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.32E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00107.00107.3" spectrumNativeID="sample=1 period=1 cycle=1583 experiment=2" start_scan="107" end_scan="107" precursor_neutral_mass="1458.699783" assumed_charge="3" index="214" retention_time_sec="1045.9"> <search_result> <search_hit hit_rank="1" peptide="VQIQSNRENLEQ" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1459.679068" massdiff="-0.979285" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1316"> <modification_info modified_peptide="VQIQ[129]SN[115]REN[115]LEQ"> <mod_aminoacid_mass position="4" mass="129.042594"/> <mod_aminoacid_mass position="6" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.736"/> <search_score name="deltacn" value="0.033"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.7"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.52E+001"/> </search_hit> <search_hit hit_rank="2" peptide="VQIQSNRENLEQ" peptide_prev_aa="R" peptide_next_aa="A" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="44" calc_neutral_pep_mass="1458.695052" massdiff="0.004731" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1316"> <modification_info modified_peptide="VQIQSN[115]REN[115]LEQ"> <mod_aminoacid_mass position="6" mass="115.026943"/> <mod_aminoacid_mass position="9" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.736"/> <search_score name="deltacn" value="0.033"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="5.7"/> <search_score name="sprank" value="6"/> <search_score name="expect" value="1.52E+001"/> </search_hit> <search_hit hit_rank="3" peptide="IQVREMDVLDPQ" peptide_prev_aa="R" peptide_next_aa="S" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="44" calc_neutral_pep_mass="1457.718415" massdiff="0.981368" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1316"> <modification_info modified_peptide="IQVREM[147]DVLDPQ"> <mod_aminoacid_mass position="6" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.712"/> <search_score name="deltacn" value="0.101"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="10.6"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="1.80E+001"/> </search_hit> <search_hit hit_rank="4" peptide="NKRDFVSFYQR" peptide_prev_aa="R" peptide_next_aa="R" protein="XXX_gi|529012038|ref|XP_005226889.1|" num_tot_proteins="2" num_matched_ions="4" tot_num_ions="40" calc_neutral_pep_mass="1459.720813" massdiff="-1.021030" num_tol_term="2" num_missed_cleavages="2" num_matched_peptides="1316"> <modification_info modified_peptide="N[115]KRDFVSFYQR"> <mod_aminoacid_mass position="1" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.640"/> <search_score name="deltacn" value="0.001"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="12.6"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="2.97E+001"/> </search_hit> <search_hit hit_rank="5" peptide="ELNERNSQIQVQ" peptide_prev_aa="R" peptide_next_aa="A" protein="XXX_gi|528944676|ref|XP_005204734.1|" num_tot_proteins="3" num_matched_ions="2" tot_num_ions="44" calc_neutral_pep_mass="1458.695052" massdiff="0.004731" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="1316"> <modification_info modified_peptide="ELN[115]ERNSQIQ[129]VQ"> <mod_aminoacid_mass position="3" mass="115.026943"/> <mod_aminoacid_mass position="10" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.640"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.7"/> <search_score name="sprank" value="12"/> <search_score name="expect" value="2.98E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00108.00108.3" spectrumNativeID="sample=1 period=1 cycle=1627 experiment=2" start_scan="108" end_scan="108" precursor_neutral_mass="1743.773361" assumed_charge="3" index="215" retention_time_sec="1070.9"> <search_result> <search_hit hit_rank="1" peptide="MGPTQGGYFPENVKAM" peptide_prev_aa="-" peptide_next_aa="T" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="60" calc_neutral_pep_mass="1742.764379" massdiff="1.008982" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="882"> <modification_info modified_peptide="MGPTQ[129]GGYFPENVKAM[147]"> <mod_aminoacid_mass position="5" mass="129.042594"/> <mod_aminoacid_mass position="16" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.557"/> <search_score name="deltacn" value="0.165"/> <search_score name="deltacnstar" value="0.141"/> <search_score name="spscore" value="0.6"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="4.67E+000"/> </search_hit> <search_hit hit_rank="2" peptide="MGPTQGGYFPENVKAM" peptide_prev_aa="-" peptide_next_aa="T" protein="gi|528921178|ref|XP_592304.7|" num_tot_proteins="2" num_matched_ions="1" tot_num_ions="60" calc_neutral_pep_mass="1741.780363" massdiff="1.992998" num_tol_term="1" num_missed_cleavages="1" num_matched_peptides="882"> <modification_info modified_peptide="MGPTQGGYFPENVKAM[147]"> <mod_aminoacid_mass position="16" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.479"/> <search_score name="deltacn" value="0.028"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="0.6"/> <search_score name="sprank" value="7"/> <search_score name="expect" value="1.02E+001"/> </search_hit> <search_hit hit_rank="3" peptide="TTSECLTVTNSSWEK" peptide_prev_aa="V" peptide_next_aa="K" protein="gi|528928354|ref|XP_005193233.1|" num_tot_proteins="1" num_matched_ions="2" tot_num_ions="56" calc_neutral_pep_mass="1743.750912" massdiff="0.022449" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="882"> <modification_info modified_peptide="TTSECLTVTN[115]SSWEK"> <mod_aminoacid_mass position="5" mass="161.014665"/> <mod_aminoacid_mass position="10" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.465"/> <search_score name="deltacn" value="0.148"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="2.5"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.17E+001"/> </search_hit> <search_hit hit_rank="4" peptide="VLDSKQCFNRGCEK" peptide_prev_aa="P" peptide_next_aa="H" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="52" calc_neutral_pep_mass="1743.744388" massdiff="0.028973" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="882"> <modification_info modified_peptide="VLDSKQ[129]CFN[115]RGCEK"> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="161.014665"/> <mod_aminoacid_mass position="9" mass="115.026943"/> <mod_aminoacid_mass position="12" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.396"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="2.32E+001"/> </search_hit> <search_hit hit_rank="5" peptide="VLDSKQCFNRGCEK" peptide_prev_aa="P" peptide_next_aa="H" protein="XXX_gi|528908812|ref|XP_609847.5|" num_tot_proteins="12" num_matched_ions="1" tot_num_ions="52" calc_neutral_pep_mass="1742.760372" massdiff="1.012989" num_tol_term="1" num_missed_cleavages="2" num_matched_peptides="882"> <modification_info modified_peptide="VLDSKQ[129]CFNRGCEK"> <mod_aminoacid_mass position="6" mass="129.042594"/> <mod_aminoacid_mass position="7" mass="161.014665"/> <mod_aminoacid_mass position="12" mass="161.014665"/> </modification_info> <search_score name="xcorr" value="0.396"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="1.3"/> <search_score name="sprank" value="5"/> <search_score name="expect" value="2.32E+001"/> </search_hit> </search_result> </spectrum_query> <spectrum_query spectrum="201208-378803.00108.00108.2" spectrumNativeID="sample=1 period=1 cycle=1627 experiment=2" start_scan="108" end_scan="108" precursor_neutral_mass="1162.515574" assumed_charge="2" index="216" retention_time_sec="1070.9"> <search_result> <search_hit hit_rank="1" peptide="ISDMNQNIGAT" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="20" calc_neutral_pep_mass="1163.512853" massdiff="-0.997279" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="562"> <modification_info modified_peptide="ISDMN[115]QNIGAT"> <mod_aminoacid_mass position="5" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.721"/> <search_score name="deltacn" value="0.290"/> <search_score name="deltacnstar" value="0.063"/> <search_score name="spscore" value="28.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="2" peptide="ISDMNQNIGAT" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="20" calc_neutral_pep_mass="1163.512853" massdiff="-0.997279" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="562"> <modification_info modified_peptide="ISDMNQ[129]NIGAT"> <mod_aminoacid_mass position="6" mass="129.042594"/> </modification_info> <search_score name="xcorr" value="0.675"/> <search_score name="deltacn" value="0.242"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="28.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="3" peptide="ISDMNQNIGAT" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="4" tot_num_ions="20" calc_neutral_pep_mass="1163.512853" massdiff="-0.997279" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="562"> <modification_info modified_peptide="ISDMNQN[115]IGAT"> <mod_aminoacid_mass position="7" mass="115.026943"/> </modification_info> <search_score name="xcorr" value="0.675"/> <search_score name="deltacn" value="0.242"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="28.2"/> <search_score name="sprank" value="1"/> <search_score name="expect" value="1.00E+000"/> </search_hit> <search_hit hit_rank="4" peptide="VIDEGLMDEK" peptide_prev_aa="E" peptide_next_aa="L" protein="gi|528944676|ref|XP_005204734.1|" num_tot_proteins="1" num_matched_ions="1" tot_num_ions="18" calc_neutral_pep_mass="1163.537991" massdiff="-1.022417" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="562"> <modification_info modified_peptide="VIDEGLM[147]DEK"> <mod_aminoacid_mass position="7" mass="147.035385"/> </modification_info> <search_score name="xcorr" value="0.512"/> <search_score name="deltacn" value="0.077"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="3.7"/> <search_score name="sprank" value="3"/> <search_score name="expect" value="2.60E+000"/> </search_hit> <search_hit hit_rank="5" peptide="ISDMNQNIGAT" peptide_prev_aa="K" peptide_next_aa="E" protein="XXX_gi|528944678|ref|XP_005204735.1|" num_tot_proteins="3" num_matched_ions="3" tot_num_ions="20" calc_neutral_pep_mass="1162.528837" massdiff="-0.013263" num_tol_term="1" num_missed_cleavages="0" num_matched_peptides="562"> <search_score name="xcorr" value="0.473"/> <search_score name="deltacn" value="1.000"/> <search_score name="deltacnstar" value="0.000"/> <search_score name="spscore" value="15.4"/> <search_score name="sprank" value="2"/> <search_score name="expect" value="4.02E+000"/> </search_hit> </search_result> </spectrum_query> </msms_run_summary> </msms_pipeline_analysis>