Mercurial > repos > galaxyp > mz_to_sqlite

diff test-data/test_id.mzid @ 2:1320693cbf1e draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/mz_to_sqlite commit ae0093d9f1576f38aee83b2ed5e7f70c901d5864
author galaxyp
date Mon, 11 Feb 2019 17:30:46 -0500
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_id.mzid	Mon Feb 11 17:30:46 2019 -0500
@@ -0,0 +1,392 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<MzIdentML id="PeptideShaker v1.16.9" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" version="1.1.0" creationDate="2018-01-19T02:00:07">
+	<cvList>
+		<cv id="PSI-MS" uri="https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo" fullName="PSI-MS"/>
+		<cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" fullName="UNIMOD"/>
+		<cv id="UO" uri="https://raw.githubusercontent.com/bio-ontology-research-group/unit-ontology/master/unit.obo" fullName="UNIT-ONTOLOGY"/>
+		<cv id="PRIDE" uri="https://github.com/PRIDE-Utilities/pride-ontology/blob/master/pride_cv.obo" fullName="PRIDE"/>
+	</cvList>
+	<AnalysisSoftwareList>
+		<AnalysisSoftware name="PeptideShaker" version="1.16.9" id="ID_software" uri="http://compomics.github.io/projects/peptide-shaker.html">
+			<ContactRole contact_ref="PS_DEV">
+				<Role>
+					<cvParam cvRef="PSI-MS" accession="MS:1001267" name="software vendor"/>
+				</Role>
+			</ContactRole>
+			<SoftwareName>
+				<cvParam cvRef="PSI-MS" accession="MS:1002458" name="PeptideShaker"/>
+			</SoftwareName>
+			<Customizations>No customisations</Customizations>
+		</AnalysisSoftware>
+	</AnalysisSoftwareList>
+	<Provider id="PROVIDER">
+		<ContactRole contact_ref="PROVIDER">
+			<Role>
+				<cvParam cvRef="PSI-MS" accession="MS:1001271" name="researcher"/>
+			</Role>
+		</ContactRole>
+	</Provider>
+	<AuditCollection>
+		<Person firstName="Proteomics" lastName="Galaxy" id="PROVIDER">
+			<cvParam cvRef="PSI-MS" accession="MS:1000587" name="contact address" value="galaxyp@umn.edu"/>
+			<cvParam cvRef="PSI-MS" accession="MS:1000589" name="contact email" value="galaxyp@umn.edu"/>
+			<Affiliation organization_ref="ORG_DOC_OWNER"/>
+		</Person>
+		<Organization name="University of Minnesota" id="ORG_DOC_OWNER">
+			<cvParam cvRef="PSI-MS" accession="MS:1000586" name="contact name" value="University of Minnesota"/>
+			<cvParam cvRef="PSI-MS" accession="MS:1000587" name="contact address" value="Minneapolis, MN 55455, Vereinigte Staaten"/>
+			<cvParam cvRef="PSI-MS" accession="MS:1000589" name="contact email" value="galaxyp@umn.edu"/>
+		</Organization>
+		<Organization name="PeptideShaker developers" id="PS_DEV">
+			<cvParam cvRef="PSI-MS" accession="MS:1000586" name="contact name" value="PeptideShaker developers"/>
+			<cvParam cvRef="PSI-MS" accession="MS:1000587" name="contact address" value="Proteomics Unit, Building for Basic Biology, University of Bergen, Jonas Liesvei 91, N-5009 Bergen, Norway"/>
+			<cvParam cvRef="PSI-MS" accession="MS:1000588" name="contact URL" value="http://compomics.github.io/projects/peptide-shaker.html"/>
+			<cvParam cvRef="PSI-MS" accession="MS:1000589" name="contact email" value="peptide-shaker@googlegroups.com"/>
+		</Organization>
+	</AuditCollection>
+	<SequenceCollection></SequenceCollection>
+	<AnalysisCollection>
+		<SpectrumIdentification spectrumIdentificationList_ref="SIL_1" spectrumIdentificationProtocol_ref="SearchProtocol_1" id="SpecIdent_1">
+			<InputSpectra spectraData_ref="Mascot formatted MGF of data 13.mgf"/>
+			<InputSpectra spectraData_ref="Mascot formatted MGF of data 8.mgf"/>
+			<InputSpectra spectraData_ref="Mascot formatted MGF of data 7.mgf"/>
+			<InputSpectra spectraData_ref="Mascot formatted MGF of data 6.mgf"/>
+			<InputSpectra spectraData_ref="Mascot formatted MGF of data 12.mgf"/>
+			<InputSpectra spectraData_ref="Mascot formatted MGF of data 14.mgf"/>
+			<InputSpectra spectraData_ref="Mascot formatted MGF of data 11.mgf"/>
+			<InputSpectra spectraData_ref="Mascot formatted MGF of data 10.mgf"/>
+			<InputSpectra spectraData_ref="Mascot formatted MGF of data 9.mgf"/>
+			<SearchDatabaseRef searchDatabase_ref="SearchDB_1"/>
+		</SpectrumIdentification>
+		<ProteinDetection proteinDetectionProtocol_ref="PeptideShaker_1" proteinDetectionList_ref="Protein_groups" id="PD_1">
+			<InputSpectrumIdentifications spectrumIdentificationList_ref="SIL_1"/>
+		</ProteinDetection>
+	</AnalysisCollection>
+	<AnalysisProtocolCollection>
+		<SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" id="SearchProtocol_1">
+			<SearchType>
+				<cvParam cvRef="PSI-MS" accession="MS:1001083" name="ms-ms search"/>
+			</SearchType>
+			<AdditionalSearchParams>
+				<cvParam cvRef="PSI-MS" accession="MS:1001211" name="parent mass type mono"/>
+				<cvParam cvRef="PSI-MS" accession="MS:1001256" name="fragment mass type mono"/>
+			</AdditionalSearchParams>
+			<ModificationParams>
+				<SearchModification residues="C" massDelta="57.021464" fixedMod= "true" >
+					<cvParam cvRef="UNIMOD" accession="UNIMOD:4" name="Carbamidomethyl"/>
+				</SearchModification>
+				<SearchModification residues="K" massDelta="144.102062" fixedMod= "true" >
+					<cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
+				</SearchModification>
+				<SearchModification residues="." massDelta="144.102062" fixedMod= "true" >
+					<SpecificityRules>
+						<cvParam cvRef="PSI-MS" accession="MS:1001189" name="modification specificity peptide N-term"/>
+					</SpecificityRules>
+					<cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
+				</SearchModification>
+				<SearchModification residues="M" massDelta="15.994915" fixedMod= "false" >
+					<cvParam cvRef="UNIMOD" accession="UNIMOD:35" name="Oxidation"/>
+				</SearchModification>
+				<SearchModification residues="Y" massDelta="144.102062" fixedMod= "false" >
+					<cvParam cvRef="UNIMOD" accession="UNIMOD:214" name="iTRAQ4plex"/>
+				</SearchModification>
+			</ModificationParams>
+			<Enzymes independent="false">
+			<Enzyme missedCleavages="2" semiSpecific="false" id="Enz1" name="Trypsin">
+				<EnzymeName>
+					<cvParam cvRef="PSI-MS" accession="MS:1001251" name="Trypsin"/>
+				</EnzymeName>
+			</Enzyme>
+		</Enzymes>
+		<FragmentTolerance>
+			<cvParam accession="MS:1001412" cvRef="PSI-MS" unitCvRef="UO" unitName="dalton" unitAccession="UO:0000221" value="0.05" name="search tolerance plus value" />
+			<cvParam accession="MS:1001413" cvRef="PSI-MS" unitCvRef="UO" unitName="dalton" unitAccession="UO:0000221" value="0.05" name="search tolerance minus value" />
+		</FragmentTolerance>
+		<ParentTolerance>
+			<cvParam accession="MS:1001412" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance plus value" />
+			<cvParam accession="MS:1001413" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance minus value" />
+		</ParentTolerance>
+		<Threshold>
+			<cvParam cvRef="PSI-MS" accession="MS:1001364" name="peptide sequence-level global FDR" value="1.0"/>
+			<cvParam cvRef="PSI-MS" accession="MS:1002350" name="PSM-level global FDR" value="1.0"/>
+			<cvParam cvRef="PSI-MS" accession="MS:1002567" name="phosphoRS score threshold" value="95.0"/>
+			<cvParam cvRef="PSI-MS" accession="MS:1002557" name="D-Score threshold" value="95.0"/>
+		</Threshold>
+	</SpectrumIdentificationProtocol>
+	<ProteinDetectionProtocol analysisSoftware_ref="ID_software" id="PeptideShaker_1">
+		<Threshold>
+			<cvParam cvRef="PSI-MS" accession="MS:1002369" name="protein group-level global FDR" value="0.01"/>
+		</Threshold>
+	</ProteinDetectionProtocol>
+</AnalysisProtocolCollection>
+<DataCollection>
+	<Inputs>
+		<SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%2010.t.xml" id="SourceFile_1">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
+			</FileFormat>
+		</SourceFile>
+		<SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%2011.t.xml" id="SourceFile_2">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
+			</FileFormat>
+		</SourceFile>
+		<SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%2012.t.xml" id="SourceFile_3">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
+			</FileFormat>
+		</SourceFile>
+		<SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%2013.t.xml" id="SourceFile_4">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
+			</FileFormat>
+		</SourceFile>
+		<SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%2014.t.xml" id="SourceFile_5">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
+			</FileFormat>
+		</SourceFile>
+		<SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%206.t.xml" id="SourceFile_6">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
+			</FileFormat>
+		</SourceFile>
+		<SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%207.t.xml" id="SourceFile_7">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
+			</FileFormat>
+		</SourceFile>
+		<SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%208.t.xml" id="SourceFile_8">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
+			</FileFormat>
+		</SourceFile>
+		<SourceFile location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/Mascot%20formatted%20MGF%20of%20data%209.t.xml" id="SourceFile_9">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001401" name="X!Tandem xml format"/>
+			</FileFormat>
+		</SourceFile>
+		<SearchDatabase numDatabaseSequences="50348" location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/input_database.fasta" id="SearchDB_1">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001348" name="FASTA format"/>
+			</FileFormat>
+			<DatabaseName>
+				<userParam name="input_database.fasta"/>
+			</DatabaseName>
+			<cvParam cvRef="PSI-MS" accession="MS:1001073" name="database type amino acid"/>
+		</SearchDatabase>
+		<SpectraData location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/Mascot%20formatted%20MGF%20of%20data%2013.mgf" id="Mascot formatted MGF of data 13.mgf" name="Mascot formatted MGF of data 13.mgf">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001062" name="Mascot MGF format"/>
+			</FileFormat>
+			<SpectrumIDFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1000774" name="multiple peak list nativeID format"/>
+			</SpectrumIDFormat>
+		</SpectraData>
+		<SpectraData location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/Mascot%20formatted%20MGF%20of%20data%208.mgf" id="Mascot formatted MGF of data 8.mgf" name="Mascot formatted MGF of data 8.mgf">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001062" name="Mascot MGF format"/>
+			</FileFormat>
+			<SpectrumIDFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1000774" name="multiple peak list nativeID format"/>
+			</SpectrumIDFormat>
+		</SpectraData>
+		<SpectraData location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/Mascot%20formatted%20MGF%20of%20data%207.mgf" id="Mascot formatted MGF of data 7.mgf" name="Mascot formatted MGF of data 7.mgf">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001062" name="Mascot MGF format"/>
+			</FileFormat>
+			<SpectrumIDFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1000774" name="multiple peak list nativeID format"/>
+			</SpectrumIDFormat>
+		</SpectraData>
+		<SpectraData location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/Mascot%20formatted%20MGF%20of%20data%206.mgf" id="Mascot formatted MGF of data 6.mgf" name="Mascot formatted MGF of data 6.mgf">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001062" name="Mascot MGF format"/>
+			</FileFormat>
+			<SpectrumIDFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1000774" name="multiple peak list nativeID format"/>
+			</SpectrumIDFormat>
+		</SpectraData>
+		<SpectraData location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/Mascot%20formatted%20MGF%20of%20data%2012.mgf" id="Mascot formatted MGF of data 12.mgf" name="Mascot formatted MGF of data 12.mgf">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001062" name="Mascot MGF format"/>
+			</FileFormat>
+			<SpectrumIDFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1000774" name="multiple peak list nativeID format"/>
+			</SpectrumIDFormat>
+		</SpectraData>
+		<SpectraData location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/Mascot%20formatted%20MGF%20of%20data%2014.mgf" id="Mascot formatted MGF of data 14.mgf" name="Mascot formatted MGF of data 14.mgf">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001062" name="Mascot MGF format"/>
+			</FileFormat>
+			<SpectrumIDFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1000774" name="multiple peak list nativeID format"/>
+			</SpectrumIDFormat>
+		</SpectraData>
+		<SpectraData location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/Mascot%20formatted%20MGF%20of%20data%2011.mgf" id="Mascot formatted MGF of data 11.mgf" name="Mascot formatted MGF of data 11.mgf">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001062" name="Mascot MGF format"/>
+			</FileFormat>
+			<SpectrumIDFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1000774" name="multiple peak list nativeID format"/>
+			</SpectrumIDFormat>
+		</SpectraData>
+		<SpectraData location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/Mascot%20formatted%20MGF%20of%20data%2010.mgf" id="Mascot formatted MGF of data 10.mgf" name="Mascot formatted MGF of data 10.mgf">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001062" name="Mascot MGF format"/>
+			</FileFormat>
+			<SpectrumIDFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1000774" name="multiple peak list nativeID format"/>
+			</SpectrumIDFormat>
+		</SpectraData>
+		<SpectraData location="file:/panfs/roc/website/galaxyp.msi.umn.edu/GALAXYP/database/job_working_directory/000/158/158323/working/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/Mascot%20formatted%20MGF%20of%20data%209.mgf" id="Mascot formatted MGF of data 9.mgf" name="Mascot formatted MGF of data 9.mgf">
+			<FileFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1001062" name="Mascot MGF format"/>
+			</FileFormat>
+			<SpectrumIDFormat>
+				<cvParam cvRef="PSI-MS" accession="MS:1000774" name="multiple peak list nativeID format"/>
+			</SpectrumIDFormat>
+		</SpectraData>
+	</Inputs>
+	<AnalysisData>
+		<SpectrumIdentificationList id="SIL_1">
+			<FragmentationTable>
+				<Measure id="Measure_MZ">
+					<cvParam cvRef="PSI-MS" accession="MS:1001225" name="product ion m/z" unitCvRef="PSI-MS" unitAccession="MS:1000040" unitName="m/z" />
+				</Measure>
+				<Measure id="Measure_Int">
+					<cvParam cvRef="PSI-MS" accession="MS:1001226" name="product ion intensity" unitCvRef="PSI-MS" unitAccession="MS:1000131" unitName="number of detector counts"/>
+				</Measure>
+				<Measure id="Measure_Error">
+					<cvParam cvRef="PSI-MS" accession="MS:1001227" name="product ion m/z error" unitCvRef="PSI-MS" unitAccession="MS:1000040" unitName="m/z"/>
+				</Measure>
+			</FragmentationTable>
+			<SpectrumIdentificationResult spectraData_ref="Mascot formatted MGF of data 13.mgf" spectrumID="index=8003" id="SIR_1">
+				<SpectrumIdentificationItem passThreshold="false" rank="1" peptide_ref="YPDSVCTVPSPPK_144.10206242080005-ATAA-1" calculatedMassToCharge="627.004694306842" experimentalMassToCharge="627.01001" chargeState="3" id="SII_1_1">
+					<PeptideEvidenceRef peptideEvidence_ref="PepEv_30384"/>
+					<Fragmentation>
+						<IonType charge="1" index="1">
+							<FragmentArray measure_ref="Measure_MZ" values="136.075226"/>
+							<FragmentArray measure_ref="Measure_Int" values="766.121643"/>
+							<FragmentArray measure_ref="Measure_Error" values="-4.643798020254053E-4"/>
+							<cvParam cvRef="PSI-MS" accession="MS:1001239" name="frag: immonium ion"/>
+						</IonType>
+						<IonType charge="1" index="0">
+							<FragmentArray measure_ref="Measure_MZ" values="114.110435"/>
+							<FragmentArray measure_ref="Measure_Int" values="26313.552734"/>
+							<FragmentArray measure_ref="Measure_Error" values="-2.4469905203261533E-4"/>
+							<cvParam cvRef="PSI-MS" accession="MS:1002668" name="frag: iTRAQ 4plex reporter ion" value="114"/>
+						</IonType>
+						<IonType charge="1" index="0">
+							<FragmentArray measure_ref="Measure_MZ" values="115.107475"/>
+							<FragmentArray measure_ref="Measure_Int" values="28673.560547"/>
+							<FragmentArray measure_ref="Measure_Error" values="-2.3959245203286628E-4"/>
+							<cvParam cvRef="PSI-MS" accession="MS:1002668" name="frag: iTRAQ 4plex reporter ion" value="115"/>
+						</IonType>
+						<IonType charge="1" index="1">
+							<FragmentArray measure_ref="Measure_MZ" values="452.243103"/>
+							<FragmentArray measure_ref="Measure_Int" values="6402.285156"/>
+							<FragmentArray measure_ref="Measure_Error" values="-0.031626840962132974"/>
+							<cvParam cvRef="PSI-MS" accession="MS:1001224" name="frag: b ion"/>
+						</IonType>
+						<IonType charge="2" index="11">
+							<FragmentArray measure_ref="Measure_MZ" values="746.385559"/>
+							<FragmentArray measure_ref="Measure_Int" values="990.364075"/>
+							<FragmentArray measure_ref="Measure_Error" values="0.012332756817841073"/>
+							<cvParam cvRef="PSI-MS" accession="MS:1001224" name="frag: b ion"/>
+						</IonType>
+						<IonType charge="1" index="0">
+							<FragmentArray measure_ref="Measure_MZ" values="116.11042"/>
+							<FragmentArray measure_ref="Measure_Int" values="1398.408447"/>
+							<FragmentArray measure_ref="Measure_Error" values="-6.494302520252404E-4"/>
+							<cvParam cvRef="PSI-MS" accession="MS:1002668" name="frag: iTRAQ 4plex reporter ion" value="116"/>
+						</IonType>
+						<IonType charge="1" index="1 2 4 5 9">
+							<FragmentArray measure_ref="Measure_MZ" values="291.216156 388.266693 572.326904 669.367859 1128.594971"/>
+							<FragmentArray measure_ref="Measure_Int" values="3281.50415 2398.454346 483.902496 8817.573242 515.554626"/>
+							<FragmentArray measure_ref="Measure_Error" values="0.0012894146879034452 -9.374341621537496E-4 -0.025518687282101382 -0.037327536132124806 -0.02537033580233583"/>
+							<cvParam cvRef="PSI-MS" accession="MS:1001220" name="frag: y ion"/>
+						</IonType>
+						<IonType charge="2" index="2 5 10">
+							<FragmentArray measure_ref="Measure_MZ" values="194.601517 335.187775 608.353699"/>
+							<FragmentArray measure_ref="Measure_Int" values="449.08316 3051.163086 580.203918"/>
+							<FragmentArray measure_ref="Measure_Error" values="-0.03593645048707117 -0.018456501472030595 0.023875896557797205"/>
+							<cvParam cvRef="PSI-MS" accession="MS:1001220" name="frag: y ion"/>
+						</IonType>
+					</Fragmentation>
+					<cvParam cvRef="PSI-MS" accession="MS:1002466" name="PeptideShaker PSM score" value="-5.9106"/>
+					<cvParam cvRef="PSI-MS" accession="MS:1002467" name="PeptideShaker PSM confidence" value="10.1695"/>
+					<cvParam cvRef="PSI-MS" accession="MS:1001330" name="X!Tandem:expect" value="3.9"/>
+					<cvParam cvRef="PSI-MS" accession="MS:1001117" name="theoretical mass" value="1877.99225352009" unitCvRef="UO" unitAccession="UO:0000221" unitName="dalton"/>
+					<cvParam cvRef="PSI-MS" accession="MS:1002540" name="PeptideShaker PSM confidence type" value="Not Validated"/>
+				</SpectrumIdentificationItem>
+				<cvParam cvRef="PSI-MS" accession="MS:1000796" name="spectrum title" value="Mo_Tai_iTRAQ_f8.09495.09495.3"/>
+				<cvParam cvRef="PSI-MS" accession="MS:1000894" name="retention time" value="-1.0" unitCvRef="UO" unitAccession="UO:0000010" unitName="second"/>
+			</SpectrumIdentificationResult>
+			
+			
+			
+		</SpectrumIdentificationList>
+		<ProteinDetectionList id="Protein_groups">
+			<ProteinAmbiguityGroup id="PAG_0">
+				<ProteinDetectionHypothesis id="PAG_0_1" dBSequence_ref="P27048" passThreshold="true">
+					<PeptideHypothesis peptideEvidence_ref="PepEv_5247">
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_27936_1"/>
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_35350_1"/>
+					</PeptideHypothesis>
+					<PeptideHypothesis peptideEvidence_ref="PepEv_11948">
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_28486_1"/>
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_32857_1"/>
+					</PeptideHypothesis>
+					<PeptideHypothesis peptideEvidence_ref="PepEv_38645">
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_28823_1"/>
+					</PeptideHypothesis>
+					<PeptideHypothesis peptideEvidence_ref="PepEv_64667">
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_40692_1"/>
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_46888_1"/>
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_49545_1"/>
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_59118_1"/>
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_62451_1"/>
+					</PeptideHypothesis>
+					<PeptideHypothesis peptideEvidence_ref="PepEv_68343">
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_41960_1"/>
+					</PeptideHypothesis>
+					<cvParam cvRef="PSI-MS" accession="MS:1002403" name="group representative"/>
+					<cvParam cvRef="PSI-MS" accession="MS:1002401" name="leading protein"/>
+					<cvParam cvRef="PSI-MS" accession="MS:1001093" name="sequence coverage" value="0.0649"/>
+				</ProteinDetectionHypothesis>
+				<ProteinDetectionHypothesis id="PAG_0_2" dBSequence_ref="P63163" passThreshold="true">
+					<PeptideHypothesis peptideEvidence_ref="PepEv_5248">
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_27936_1"/>
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_35350_1"/>
+					</PeptideHypothesis>
+					<PeptideHypothesis peptideEvidence_ref="PepEv_11949">
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_28486_1"/>
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_32857_1"/>
+					</PeptideHypothesis>
+					<PeptideHypothesis peptideEvidence_ref="PepEv_38646">
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_28823_1"/>
+					</PeptideHypothesis>
+					<PeptideHypothesis peptideEvidence_ref="PepEv_64668">
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_40692_1"/>
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_46888_1"/>
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_49545_1"/>
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_59118_1"/>
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_62451_1"/>
+					</PeptideHypothesis>
+					<PeptideHypothesis peptideEvidence_ref="PepEv_68344">
+						<SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_41960_1"/>
+					</PeptideHypothesis>
+					<cvParam cvRef="PSI-MS" accession="MS:1002401" name="leading protein"/>
+				</ProteinDetectionHypothesis>
+				<cvParam cvRef="PSI-MS" accession="MS:1002470" name="PeptideShaker protein group score" value="62.4192"/>
+				<cvParam cvRef="PSI-MS" accession="MS:1002471" name="PeptideShaker protein group confidence" value="99.9665"/>
+				<cvParam cvRef="PSI-MS" accession="MS:1002542" name="PeptideShaker protein confidence type" value="Confident"/>
+				<cvParam cvRef="PSI-MS" accession="MS:1002415" name="protein group passes threshold" value="true"/>
+			</ProteinAmbiguityGroup>
+			
+			<cvParam cvRef="PSI-MS" accession="MS:1002404" name="count of identified proteins" value="3290"/>
+		</ProteinDetectionList>
+	</AnalysisData>
+</DataCollection>
+</MzIdentML>
\ No newline at end of file