diff export.xml @ 0:201a15633354 draft default tip

Initial commit.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/export.xml	Fri May 10 17:28:02 2013 -0400
@@ -0,0 +1,32 @@
+<tool id="mzmatch_export" version="0.1.0" name="Peakml Export">
+  <description>
+  </description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio" />
+  <expand macro="requires" />
+  <command interpreter="python">
+    mzmatch_wrapper.py --executable 'convert.ConvertToText' --config $config
+  </command>
+  <configfiles>
+    <configfile name="config">-i $input1 -o $output</configfile>
+  </configfiles>
+  <inputs>
+    <param name="input1" label="Input" type="data" format="peakml" />
+  </inputs>
+  <outputs>
+    <data format="tabular" name="output" />
+  </outputs>
+  <help>
+**What it does**
+
+Converts the contents of a PeakML file to a tab-separated text file. In order to make the file useable in a spreadsheet environment, only the top-level data for each measurement is given in the file.
+
+**Citation**
+
+For the underlying tool, please cite ``PeakML/mzMatch: A File Format, Java Library, R Library, and Tool-Chain for Mass Spectrometry Data Analysis. Richard A. Scheltema, Andris Jankevics, Ritsert C. Jansen, Morris A. Swertz, and Rainer Breitling. Analytical Chemistry 2011 83 (7), pp 2786-2793``
+
+If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-mzmatch
+  </help>
+</tool>