Mercurial > repos > galaxyp > openms
diff peptide_indexer.xml @ 4:1183846e70a1 draft
Uploaded
author | galaxyp |
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date | Wed, 19 Jun 2013 13:15:44 -0400 |
parents | cf0d72c7b482 |
children |
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--- a/peptide_indexer.xml Fri May 10 17:31:59 2013 -0400 +++ b/peptide_indexer.xml Wed Jun 19 13:15:44 2013 -0400 @@ -16,9 +16,7 @@ fasta=$database out=$output decoy_string=$decoy_string -#if $decoy_string_position == "prefix" -prefix=true -#end if +prefix=$prefix $extact_search $write_protein_sequence $keep_unreferenced_proteins @@ -29,9 +27,9 @@ <param name="input1" label="Identification Input" type="data" format="idxml" /> <param name="database" label="Database" type="data" format="fasta" /> <param name="decoy_string" type="text" value="_rev" label="Decoy string"/> - <param name="decoy_string_position" type="select" label="Decoy Position"> - <option value="suffix" selected="true">Suffix</option> - <option value="prefix">Prefix</option> + <param name="prefix" type="select" label="Decoy Position"> + <option value="false" selected="true">Suffix</option> + <option value="true">Prefix</option> </param> <param name="extact_search" label="Exact Search" type="boolean" truevalue="" falsevalue="full_tolerant_search=true" checked="true" /> <param name="write_protein_sequence" type="boolean" truevalue="write_protein_sequence=true" falsevalue="" checked="false" label="Store Protein Sequences" />