Mercurial > repos > galaxyp > openms

diff idxml_to_peptides.xml @ 2:cf0d72c7b482 draft

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Update.
author galaxyp
date Fri, 10 May 2013 17:31:05 -0400
parents ba86fd127f5a
children
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line diff
--- a/idxml_to_peptides.xml	Wed Dec 19 00:33:53 2012 -0500
+++ b/idxml_to_peptides.xml	Fri May 10 17:31:05 2013 -0400
@@ -1,11 +1,13 @@
 <tool id="openms_idxml_to_peptides" version="0.1.0" name="Export peptide report from idXML ">
   <description>
   </description>
-  <requirements>
-    <requirement type="package">openms</requirement>
-  </requirements>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio" />
+  <expand macro="requires" />
   <command interpreter="python">
-    idxml_exporter.py --type peptide --in ${in} --out ${out}
+    openms_exporter.py --type peptide --in ${in} --out ${out}
   </command>
   <inputs>
     <param format="idxml" name="in" type="data" label="Input Identification File"/>