Mercurial > repos > galaxyp > openms

view README_REPO.md @ 2:cf0d72c7b482 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Update.
author galaxyp
date Fri, 10 May 2013 17:31:05 -0400
parents ba86fd127f5a
children
line wrap: on
line source

# OpenMS

If there is a tool that is part of OpenMS but not available here, let
John Chilton (jmchilton@gmail.com) and he will try to add it.

These tools require Galaxy to be equipped with common proteomic
datatypes. These can be obtained by installing Ira Cooke's ProtK via
the tool shed or merging the changesets from the following repository
into your Galaxy instance:

     https://bitbucket.org/galaxyp/galaxy-dist-proteomics

# Installing

These tools all require OpenMS (at least version 1.10) and may require
other dependencies (such as PepNovo for instance).

For Galaxy-P we are installing this tool via CloudBioLinux
(https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While
this fabric script may not be exactly appropriate for your environment
it may serve as a template for how to install this software.