comparison ClusterMassTraces.xml @ 2:6d513a5aaa36 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"

1:377c3c7c058c

    <param name="max_lag" argument="-max_lag" type="integer" optional="true" value="1" label="Maximal lag" help=""/>
    <param name="max_rt_apex_difference" argument="-max_rt_apex_difference" type="float" optional="true" value="5.0" label="Maximal difference of the apex in retention time" help=""/>
    <param name="max_intensity_cutoff" argument="-max_intensity_cutoff" type="float" optional="true" value="0.0" label="Maximal intensity to be added to a spectrum" help=""/>
    <param name="add_precursor" argument="-add_precursor" type="float" optional="true" value="0.0" label="Add a precursor mass" help=""/>
    <expand macro="adv_opts_macro">
      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
      <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
        <expand macro="list_string_san"/>
      </param>
    </expand>
    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
      <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
    </param>
  </inputs>
  <outputs>
    <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>

  <tests>
    <expand macro="autotest_ClusterMassTraces"/>
    <expand macro="manutest_ClusterMassTraces"/>
  </tests>
  <help><![CDATA[Creates pseudo spectra.
]]></help>
  <expand macro="references"/>
</tool>

2:6d513a5aaa36

    <param name="max_lag" argument="-max_lag" type="integer" optional="true" value="1" label="Maximal lag" help=""/>
    <param name="max_rt_apex_difference" argument="-max_rt_apex_difference" type="float" optional="true" value="5.0" label="Maximal difference of the apex in retention time" help=""/>
    <param name="max_intensity_cutoff" argument="-max_intensity_cutoff" type="float" optional="true" value="0.0" label="Maximal intensity to be added to a spectrum" help=""/>
    <param name="add_precursor" argument="-add_precursor" type="float" optional="true" value="0.0" label="Add a precursor mass" help=""/>
    <expand macro="adv_opts_macro">
      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
      <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
        <expand macro="list_string_san"/>
      </param>
    </expand>
    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
      <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
    </param>
  </inputs>
  <outputs>
    <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>

  <tests>
    <expand macro="autotest_ClusterMassTraces"/>
    <expand macro="manutest_ClusterMassTraces"/>
  </tests>
  <help><![CDATA[Creates pseudo spectra.


For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_ClusterMassTraces.html]]></help>
  <expand macro="references"/>
</tool>