comparison filetypes.txt @ 16:cd9449dbe4e4 draft default tip

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
author galaxyp
date Thu, 01 Dec 2022 19:17:28 +0000
parents 2d24eaa25373
children
comparison
equal deleted inserted replaced
15:2d24eaa25373 16:cd9449dbe4e4
1 # CTD type # Galaxy type
2 # the following lines need to be at the top in order to ensure
3 # correct translation Galaxy->CTD type for the ambiguous cases
4 # (should only be relevant for the autogenerated tests [which
5 # do not set the ftype of the inputs])
6 txt txt
7 tsv tabular
8
9 ##analysisXML
10 # XTandemAdapter output is named xml in OMS (which is to unspecific) and bioml in Galaxy .. so this is renamed via hardcoded parameters
11 bioml xml
12 consensusXML consensusxml
13 # TODO csv is problematic, since csv often actually means tsv .. but not always
14 csv csv
15 ##dat
16 dta dta
17 dta2d dta2d
18 edta edta
19 fa fasta
20 fas fasta
21 fasta fasta
22 FASTA fasta
23 featureXML featurexml
24 featurexml featurexml
25 # fid
26 html html
27 HTML html
28 idXML idxml
29 ##ini txt
30 json json
31 kroenik kroenik
32 mascotXML mascotxml
33 mgf mgf
34 mrm mrm
35 ms sirius.ms
36 ms2 ms2
37 msp msp
38 mzData mzdata
39 mzid mzid
40 # important to have mzML first, since LuciphorAdapter is case sensitive https://github.com/OpenMS/OpenMS/issues/4444
41 mzML mzml
42 mzml mzml
43 mzq mzq
44 mzTab mztab
45 mzXML mzxml
46 novor txt
47 obo obo
48 # I guess this is the idXML output of omssa
49 omssaXML idxml
50 osw osw
51 OSW osw
52 params txt
53 paramXML paramxml
54 fasta peff
55 peplist peplist
56 # TODO pep.xml should be removed with OMS 2.6 https://github.com/OpenMS/OpenMS/pull/4541 .. but still in the tests
57 pep.xml pepxml
58 pepXML pepxml
59 png png
60 PNG png
61 protXML protxml
62 psms psms
63 # TODO implement or use
64 # psq
65 pqp pqp
66 qcML qcml
67 spec.xml spec.xml
68 splib splib
69 sqMass sqmass
70 tandem.xml tandem
71 trafoXML trafoxml
72 traML traml
73 TraML traml
74 tab tabular
75 ## MOVED TO TOP txt txt
76 raw thermo.raw
77 ## xls: SpectraSTSearchAdapter https://github.com/OpenMS/OpenMS/pull/4419
78 xls tsv
79 XML xml
80 xml xml
81 xquest.xml xquest.xml
82 xsd xml
83
84 # TODO needs to be implemented, needs to be below xml in order that Galaxy->OMS mapping gives xml
85 # cachedMzML xml