Mercurial > repos > galaxyp > openms_consensusid

diff ConsensusID.xml @ 1:66388c2e2f38 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
author galaxyp
date Tue, 18 Apr 2017 15:59:22 -0400
parents 5c56387ff06a
children 9d7e3e5da94a
line wrap: on
line diff
--- a/ConsensusID.xml	Wed Mar 01 12:40:02 2017 -0500
+++ b/ConsensusID.xml	Tue Apr 18 15:59:22 2017 -0400
@@ -25,7 +25,12 @@
   -mz_delta $param_mz_delta
 #end if
 #if $param_algorithm:
-  -algorithm $param_algorithm
+  -algorithm
+  #if " " in str($param_algorithm):
+    "$param_algorithm"
+  #else
+    $param_algorithm
+  #end if
 #end if
 #if $param_filter_considered_hits:
   -filter:considered_hits $param_filter_considered_hits
@@ -43,7 +48,12 @@
   -PEPIons:min_shared $param_PEPIons_min_shared
 #end if
 #if $param_PEPMatrix_matrix:
-  -PEPMatrix:matrix $param_PEPMatrix_matrix
+  -PEPMatrix:matrix
+  #if " " in str($param_PEPMatrix_matrix):
+    "$param_PEPMatrix_matrix"
+  #else
+    $param_PEPMatrix_matrix
+  #end if
 #end if
 #if $param_PEPMatrix_penalty:
   -PEPMatrix:penalty $param_PEPMatrix_penalty