diff ConsensusMapNormalizer.xml @ 11:f67f3c7c062f draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/ConsensusMapNormalizer.xml	Tue Mar 20 15:00:13 2018 -0400
+++ b/ConsensusMapNormalizer.xml	Wed May 15 08:30:09 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>ConsensusMapNormalizer
+  <command detect_errors="aggressive"><![CDATA[ConsensusMapNormalizer
 
 #if $param_in:
   -in $param_in
@@ -40,7 +40,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="consensusxml" optional="False" label="input file" help="(-in) "/>
     <param name="param_algorithm_type" display="radio" type="select" optional="False" value="robust_regression" label="The normalization algorithm that is applied" help="(-algorithm_type) 'robust_regression' scales each map by a fator computed from the ratios of non-differential background features (as determined by the ratio_threshold parameter), 'quantile' performs quantile normalization, 'median' scales all maps to the same median intensity, 'median_shift' shifts the median instead of scaling (WARNING: if you have regular, log-normal MS data, 'median_shift' is probably the wrong choice. Use only if you know what you're doing!)">
@@ -76,5 +76,5 @@
   <help>Normalizes maps of one consensusXML file
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ConsensusMapNormalizer.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_ConsensusMapNormalizer.html</help>
 </tool>