comparison Decharger.xml @ 15:62cce3757d5b draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"

14:b7f550d1fa7e

        </param>
        <param name="verbose_level" argument="-algorithm:FeatureDeconvolution:verbose_level" type="integer" optional="true" min="0" max="3" value="0" label="Amount of debug information given during processing" help=""/>
      </section>
    </section>
    <expand macro="adv_opts_macro">
      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
      <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
        <expand macro="list_string_san"/>
      </param>
    </expand>
    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
      <option value="out_fm_FLAG">out_fm (Amount of debug information given during processing)</option>
      <option value="outpairs_FLAG">outpairs (Amount of debug information given during processing)</option>
      <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
    </param>
  </inputs>
  <outputs>
    <data name="out_cm" label="${tool.name} on ${on_string}: out_cm" format="consensusxml"/>

    <expand macro="manutest_Decharger"/>
  </tests>
  <help><![CDATA[Decharges and merges different feature charge variants of the same peptide.


For more information, visit http://www.openms.de/documentation/TOPP_Decharger.html]]></help>
  <expand macro="references"/>
</tool>

15:62cce3757d5b

        </param>
        <param name="verbose_level" argument="-algorithm:FeatureDeconvolution:verbose_level" type="integer" optional="true" min="0" max="3" value="0" label="Amount of debug information given during processing" help=""/>
      </section>
    </section>
    <expand macro="adv_opts_macro">
      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
      <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
        <expand macro="list_string_san"/>
      </param>
    </expand>
    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
      <option value="out_fm_FLAG">out_fm (output feature map)</option>
      <option value="outpairs_FLAG">outpairs (output file)</option>
      <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
    </param>
  </inputs>
  <outputs>
    <data name="out_cm" label="${tool.name} on ${on_string}: out_cm" format="consensusxml"/>

    <expand macro="manutest_Decharger"/>
  </tests>
  <help><![CDATA[Decharges and merges different feature charge variants of the same peptide.


For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_Decharger.html]]></help>
  <expand macro="references"/>
</tool>