Mercurial > repos > galaxyp > openms_decoydatabase

comparison DecoyDatabase.xml @ 1:bf3b4e5c0dcb draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 820d990f9217706e693b8a2f1da91e13c09cb0fb
author galaxyp
date Tue, 18 Apr 2017 16:01:49 -0400
parents 53f456ded5a6
children 178e00cf12d7
comparison
equal deleted inserted replaced
0:53f456ded5a6 1:bf3b4e5c0dcb
21 #end if 21 #end if
22 #if $param_decoy_string: 22 #if $param_decoy_string:
23 -decoy_string "$param_decoy_string" 23 -decoy_string "$param_decoy_string"
24 #end if 24 #end if
25 #if $param_decoy_string_position: 25 #if $param_decoy_string_position:
26 -decoy_string_position $param_decoy_string_position 26 -decoy_string_position
27 #if " " in str($param_decoy_string_position):
28 "$param_decoy_string_position"
29 #else
30 $param_decoy_string_position
31 #end if
27 #end if 32 #end if
28 #if $param_append: 33 #if $param_append:
29 -append $param_append 34 -append
35 #if " " in str($param_append):
36 "$param_append"
37 #else
38 $param_append
39 #end if
30 #end if 40 #end if
31 #if $param_method: 41 #if $param_method:
32 -method $param_method 42 -method
43 #if " " in str($param_method):
44 "$param_method"
45 #else
46 $param_method
47 #end if
33 #end if 48 #end if
34 #if $adv_opts.adv_opts_selector=='advanced': 49 #if $adv_opts.adv_opts_selector=='advanced':
35 #if $adv_opts.param_force: 50 #if $adv_opts.param_force:
36 -force 51 -force
37 #end if 52 #end if
71 </expand> 86 </expand>
72 </inputs> 87 </inputs>
73 <outputs> 88 <outputs>
74 <data name="param_out" format="fasta"/> 89 <data name="param_out" format="fasta"/>
75 </outputs> 90 </outputs>
76 91 <tests>
77 <tests> 92 <test>
78 <test> 93 <param name="param_in" value="DecoyDatabase_input.fasta"/>
79 <param name="param_in" value="DecoyDatabase_input.fasta"/> 94 <output name="param_out" file="DecoyDatabase_output.fasta"/>
80 <output name="param_out" file="DecoyDatabase_output.fasta"/> 95 </test>
81 </test> 96 </tests>
82 </tests>
83
84 <help>Create decoy peptide databases from normal ones. 97 <help>Create decoy peptide databases from normal ones.
85 98
86 99
87 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DecoyDatabase.html</help> 100 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DecoyDatabase.html</help>
88 </tool> 101 </tool>