annotate test-data/MzMLSplitter_output_part2.mzML @ 11:d9f0079e7116 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

<?xml version="1.0" encoding="ISO-8859-1"?>
<indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd">
<mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" accession="" version="1.1.0">
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		<cv id="UO" fullName="Unit Ontology" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
		<cv id="BTO" fullName="BrendaTissue545" version="unknown" URI="http://www.brenda-enzymes.info/ontology/tissue/tree/update/update_files/BrendaTissueOBO"/>
		<cv id="GO" fullName="Gene Ontology - Slim Versions" version="unknown" URI="http://www.geneontology.org/GO_slims/goslim_goa.obo"/>
		<cv id="PATO" fullName="Quality ontology" version="unknown" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/quality.obo"/>
	</cvList>
	<fileDescription>
		<fileContent>
			<cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
		</fileContent>
		<contact>
			<cvParam cvRef="MS" accession="MS:1000586" name="contact name" value=", " />
			<cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="" />
		</contact>
	</fileDescription>
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			<cvParam cvRef="MS" accession="MS:1000004" name="sample mass" value="0" unitAccession="UO:0000021" unitName="gram" unitCvRef="UO" />
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			<cvParam cvRef="MS" accession="MS:1000006" name="sample concentration" value="0" unitAccession="UO:0000175" unitName="gram per liter" unitCvRef="UO" />
		</sample>
	</sampleList>
	<softwareList count="4">
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		</software>
		<software id="so_default" version="" >
			<cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
		</software>
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	</softwareList>
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			<componentList count="3">
				<source order="0">
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				</source>
				<analyzer order="0">
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				</analyzer>
				<detector order="0">
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				</detector>
			</componentList>
			<softwareRef ref="so_in_0" />
		</instrumentConfiguration>
	</instrumentConfigurationList>
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			</processingMethod>
			<processingMethod order="0" softwareRef="so_dp_sp_0_pm_1">
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				<cvParam cvRef="MS" accession="MS:1000747" name="completion time" value="1999-12-31+23:59" />
				<userParam name="parameter: mode" type="xsd:string" value="test_mode"/>
			</processingMethod>
		</dataProcessing>
	</dataProcessingList>
	<run id="ru_0" defaultInstrumentConfigurationRef="ic_0" sampleRef="sa_0">
		<spectrumList count="5" defaultDataProcessingRef="dp_sp_0">
			<spectrum id="spectrum=6" index="0" defaultArrayLength="885" dataProcessingRef="dp_sp_0">
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				<cvParam cvRef="MS" accession="MS:1000130" name="positive scan" />
				<scanList count="1">
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					<scan >
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