comparison DeMeanderize.xml @ 15:c64f929ec2bf draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"

14:d45d3394c1c9

  <inputs>
    <param name="in" argument="-in" type="data" format="mzml" optional="false" label="Input experiment file, containing the wrongly sorted spectra" help=" select mzml data sets(s)"/>
    <param name="num_spots_per_row" argument="-num_spots_per_row" type="integer" optional="true" min="1" value="48" label="Number of spots in one column, until next row is spotted" help=""/>
    <expand macro="adv_opts_macro">
      <param name="RT_distance" argument="-RT_distance" type="float" optional="true" min="0.0" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help=""/>
      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
      <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
        <expand macro="list_string_san"/>
      </param>
    </expand>
    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
      <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
    </param>
  </inputs>
  <outputs>
    <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>

    <expand macro="manutest_DeMeanderize"/>
  </tests>
  <help><![CDATA[Orders the spectra of MALDI spotting plates correctly.


For more information, visit http://www.openms.de/documentation/UTILS_DeMeanderize.html]]></help>
  <expand macro="references"/>
</tool>

15:c64f929ec2bf

  <inputs>
    <param name="in" argument="-in" type="data" format="mzml" optional="false" label="Input experiment file, containing the wrongly sorted spectra" help=" select mzml data sets(s)"/>
    <param name="num_spots_per_row" argument="-num_spots_per_row" type="integer" optional="true" min="1" value="48" label="Number of spots in one column, until next row is spotted" help=""/>
    <expand macro="adv_opts_macro">
      <param name="RT_distance" argument="-RT_distance" type="float" optional="true" min="0.0" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help=""/>
      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
      <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
        <expand macro="list_string_san"/>
      </param>
    </expand>
    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
      <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
    </param>
  </inputs>
  <outputs>
    <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>

    <expand macro="manutest_DeMeanderize"/>
  </tests>
  <help><![CDATA[Orders the spectra of MALDI spotting plates correctly.


For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_DeMeanderize.html]]></help>
  <expand macro="references"/>
</tool>