Mercurial > repos > galaxyp > openms_demeanderize
comparison DeMeanderize.xml @ 11:d9f0079e7116 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Fri, 17 May 2019 04:43:10 -0400 |
parents | ba3414c435cc |
children | 37caa89b3ab1 |
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10:57cb1a280091 | 11:d9f0079e7116 |
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8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>DeMeanderize | 13 <command detect_errors="aggressive"><![CDATA[DeMeanderize |
14 | 14 |
15 #if $param_in: | 15 #if $param_in: |
16 -in $param_in | 16 -in $param_in |
17 #end if | 17 #end if |
18 #if $param_out: | 18 #if $param_out: |
27 #end if | 27 #end if |
28 #if $adv_opts.param_force: | 28 #if $adv_opts.param_force: |
29 -force | 29 -force |
30 #end if | 30 #end if |
31 #end if | 31 #end if |
32 </command> | 32 ]]></command> |
33 <inputs> | 33 <inputs> |
34 <param name="param_in" type="data" format="mzml" optional="False" label="Input experiment file, containing the wrongly sorted spectra" help="(-in) "/> | 34 <param name="param_in" type="data" format="mzml" optional="False" label="Input experiment file, containing the wrongly sorted spectra" help="(-in) "/> |
35 <param name="param_num_spots_per_row" type="integer" min="1" optional="True" value="48" label="Number of spots in one column, until next row is spotted" help="(-num_spots_per_row) "/> | 35 <param name="param_num_spots_per_row" type="integer" min="1" optional="True" value="48" label="Number of spots in one column, until next row is spotted" help="(-num_spots_per_row) "/> |
36 <expand macro="advanced_options"> | 36 <expand macro="advanced_options"> |
37 <param name="param_RT_distance" type="float" min="0.0" optional="True" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help="(-RT_distance) "/> | 37 <param name="param_RT_distance" type="float" min="0.0" optional="True" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help="(-RT_distance) "/> |
42 <data name="param_out" format="mzml"/> | 42 <data name="param_out" format="mzml"/> |
43 </outputs> | 43 </outputs> |
44 <help>Orders the spectra of MALDI spotting plates correctly. | 44 <help>Orders the spectra of MALDI spotting plates correctly. |
45 | 45 |
46 | 46 |
47 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DeMeanderize.html</help> | 47 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_DeMeanderize.html</help> |
48 </tool> | 48 </tool> |