diff DeMeanderize.xml @ 0:5864c1a6e408 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/DeMeanderize.xml	Wed Mar 01 12:56:11 2017 -0500
@@ -0,0 +1,48 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--Proposed Tool Section: [Utilities]-->
+<tool id="DeMeanderize" name="DeMeanderize" version="2.1.0">
+  <description>Orders the spectra of MALDI spotting plates correctly.</description>
+  <macros>
+    <token name="@EXECUTABLE@">DeMeanderize</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="references"/>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>DeMeanderize
+
+#if $param_in:
+  -in $param_in
+#end if
+#if $param_out:
+  -out $param_out
+#end if
+#if $param_num_spots_per_row:
+  -num_spots_per_row $param_num_spots_per_row
+#end if
+#if $adv_opts.adv_opts_selector=='advanced':
+    #if $adv_opts.param_RT_distance:
+  -RT_distance $adv_opts.param_RT_distance
+#end if
+    #if $adv_opts.param_force:
+  -force
+#end if
+#end if
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="mzml" optional="False" label="Input experiment file, containing the wrongly sorted spectra" help="(-in) "/>
+    <param name="param_num_spots_per_row" type="integer" min="1" optional="True" value="48" label="Number of spots in one column, until next row is spotted" help="(-num_spots_per_row) "/>
+    <expand macro="advanced_options">
+      <param name="param_RT_distance" type="float" min="0.0" optional="True" value="1.0" label="RT distance between two spots which is used to calculated pseudo RT" help="(-RT_distance) "/>
+      <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
+    </expand>
+  </inputs>
+  <outputs>
+    <data name="param_out" format="mzml"/>
+  </outputs>
+  <help>Orders the spectra of MALDI spotting plates correctly.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_DeMeanderize.html</help>
+</tool>