Mercurial > repos > galaxyp > openms_digestormotif
comparison DigestorMotif.xml @ 7:2f207d8b1bce draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 58476cadaaf10b494317a604ad81d41c2d15f29b
author | galaxyp |
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date | Mon, 12 Feb 2018 13:13:31 -0500 |
parents | 89e45a008c66 |
children | 861833218c65 |
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6:53a5a8461c4a | 7:2f207d8b1bce |
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1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> |
3 <!--Proposed Tool Section: [Utilities]--> | 3 <!--Proposed Tool Section: [Utilities]--> |
4 <tool id="DigestorMotif" name="DigestorMotif" version="2.2.0"> | 4 <tool id="DigestorMotif" name="DigestorMotif" version="2.3.0"> |
5 <description>digests a protein database in-silico</description> | 5 <description>digests a protein database in-silico</description> |
6 <macros> | 6 <macros> |
7 <token name="@EXECUTABLE@">DigestorMotif</token> | 7 <token name="@EXECUTABLE@">DigestorMotif</token> |
8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
52 <param name="param_missed_cleavages" type="integer" min="0" optional="True" value="1" label="the number of allowed missed cleavages" help="(-missed_cleavages) "/> | 52 <param name="param_missed_cleavages" type="integer" min="0" optional="True" value="1" label="the number of allowed missed cleavages" help="(-missed_cleavages) "/> |
53 <param name="param_mass_accuracy" type="integer" value="1000" label="give your mass accuracy in pp" help="(-mass_accuracy) "/> | 53 <param name="param_mass_accuracy" type="integer" value="1000" label="give your mass accuracy in pp" help="(-mass_accuracy) "/> |
54 <param name="param_min_length" type="integer" value="6" label="minimum length of peptide" help="(-min_length) "/> | 54 <param name="param_min_length" type="integer" value="6" label="minimum length of peptide" help="(-min_length) "/> |
55 <param name="param_out_option" type="integer" value="1" label="indicate 1 (peptide table only), 2 (statistics only) or (both peptide table + statistics)" help="(-out_option) "/> | 55 <param name="param_out_option" type="integer" value="1" label="indicate 1 (peptide table only), 2 (statistics only) or (both peptide table + statistics)" help="(-out_option) "/> |
56 <param name="param_enzyme" type="select" optional="False" value="Trypsin" label="The enzyme used for peptide digestion" help="(-enzyme) "> | 56 <param name="param_enzyme" type="select" optional="False" value="Trypsin" label="The enzyme used for peptide digestion" help="(-enzyme) "> |
57 <option value="Formic_acid">Formic_acid</option> | |
58 <option value="Alpha-lytic protease">Alpha-lytic protease</option> | |
59 <option value="V8-E">V8-E</option> | |
60 <option value="unspecific cleavage">unspecific cleavage</option> | |
57 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> | 61 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> |
62 <option value="V8-DE">V8-DE</option> | |
63 <option value="leukocyte elastase">leukocyte elastase</option> | |
64 <option value="PepsinA">PepsinA</option> | |
65 <option value="Arg-C">Arg-C</option> | |
66 <option value="TrypChymo">TrypChymo</option> | |
67 <option value="no cleavage">no cleavage</option> | |
68 <option value="CNBr">CNBr</option> | |
58 <option value="Trypsin/P">Trypsin/P</option> | 69 <option value="Trypsin/P">Trypsin/P</option> |
59 <option value="PepsinA">PepsinA</option> | 70 <option value="Chymotrypsin">Chymotrypsin</option> |
71 <option value="Chymotrypsin/P">Chymotrypsin/P</option> | |
72 <option value="Asp-N_ambic">Asp-N_ambic</option> | |
73 <option value="Lys-C">Lys-C</option> | |
74 <option value="Trypsin" selected="true">Trypsin</option> | |
75 <option value="Asp-N">Asp-N</option> | |
76 <option value="Arg-C/P">Arg-C/P</option> | |
77 <option value="proline endopeptidase">proline endopeptidase</option> | |
78 <option value="Asp-N/B">Asp-N/B</option> | |
79 <option value="Lys-N">Lys-N</option> | |
80 <option value="2-iodobenzoate">2-iodobenzoate</option> | |
60 <option value="Lys-C/P">Lys-C/P</option> | 81 <option value="Lys-C/P">Lys-C/P</option> |
61 <option value="Lys-C">Lys-C</option> | |
62 <option value="TrypChymo">TrypChymo</option> | |
63 <option value="Asp-N_ambic">Asp-N_ambic</option> | |
64 <option value="Arg-C">Arg-C</option> | |
65 <option value="Trypsin" selected="true">Trypsin</option> | |
66 <option value="Chymotrypsin">Chymotrypsin</option> | |
67 <option value="Asp-N">Asp-N</option> | |
68 <option value="Formic_acid">Formic_acid</option> | |
69 <option value="V8-DE">V8-DE</option> | |
70 <option value="CNBr">CNBr</option> | |
71 <option value="proline endopeptidase">proline endopeptidase</option> | |
72 <option value="unspecific cleavage">unspecific cleavage</option> | |
73 <option value="no cleavage">no cleavage</option> | |
74 <option value="2-iodobenzoate">2-iodobenzoate</option> | |
75 <option value="V8-E">V8-E</option> | |
76 <option value="leukocyte elastase">leukocyte elastase</option> | |
77 </param> | 82 </param> |
78 <param name="param_motif" type="text" size="30" value="M" label="the motif for the restricted peptidome" help="(-motif) "> | 83 <param name="param_motif" type="text" size="30" value="M" label="the motif for the restricted peptidome" help="(-motif) "> |
79 <sanitizer> | 84 <sanitizer> |
80 <valid initial="string.printable"> | 85 <valid initial="string.printable"> |
81 <remove value="'"/> | 86 <remove value="'"/> |