Mercurial > repos > galaxyp > openms_digestormotif
comparison DigestorMotif.xml @ 3:89e45a008c66 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
| author | galaxyp |
|---|---|
| date | Wed, 09 Aug 2017 09:36:57 -0400 |
| parents | a29ead4e9ed5 |
| children | 2f207d8b1bce |
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| 2:0a6740508092 | 3:89e45a008c66 |
|---|---|
| 1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> |
| 3 <!--Proposed Tool Section: [Utilities]--> | 3 <!--Proposed Tool Section: [Utilities]--> |
| 4 <tool id="DigestorMotif" name="DigestorMotif" version="2.1.0"> | 4 <tool id="DigestorMotif" name="DigestorMotif" version="2.2.0"> |
| 5 <description>digests a protein database in-silico</description> | 5 <description>digests a protein database in-silico</description> |
| 6 <macros> | 6 <macros> |
| 7 <token name="@EXECUTABLE@">DigestorMotif</token> | 7 <token name="@EXECUTABLE@">DigestorMotif</token> |
| 8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
| 9 </macros> | 9 </macros> |
| 53 <param name="param_mass_accuracy" type="integer" value="1000" label="give your mass accuracy in pp" help="(-mass_accuracy) "/> | 53 <param name="param_mass_accuracy" type="integer" value="1000" label="give your mass accuracy in pp" help="(-mass_accuracy) "/> |
| 54 <param name="param_min_length" type="integer" value="6" label="minimum length of peptide" help="(-min_length) "/> | 54 <param name="param_min_length" type="integer" value="6" label="minimum length of peptide" help="(-min_length) "/> |
| 55 <param name="param_out_option" type="integer" value="1" label="indicate 1 (peptide table only), 2 (statistics only) or (both peptide table + statistics)" help="(-out_option) "/> | 55 <param name="param_out_option" type="integer" value="1" label="indicate 1 (peptide table only), 2 (statistics only) or (both peptide table + statistics)" help="(-out_option) "/> |
| 56 <param name="param_enzyme" type="select" optional="False" value="Trypsin" label="The enzyme used for peptide digestion" help="(-enzyme) "> | 56 <param name="param_enzyme" type="select" optional="False" value="Trypsin" label="The enzyme used for peptide digestion" help="(-enzyme) "> |
| 57 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> | 57 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> |
| 58 <option value="Trypsin/P">Trypsin/P</option> | |
| 59 <option value="PepsinA">PepsinA</option> | |
| 60 <option value="Lys-C/P">Lys-C/P</option> | |
| 61 <option value="Lys-C">Lys-C</option> | |
| 62 <option value="TrypChymo">TrypChymo</option> | |
| 63 <option value="Asp-N_ambic">Asp-N_ambic</option> | |
| 64 <option value="Arg-C">Arg-C</option> | |
| 65 <option value="Trypsin" selected="true">Trypsin</option> | |
| 66 <option value="Chymotrypsin">Chymotrypsin</option> | |
| 67 <option value="Asp-N">Asp-N</option> | |
| 68 <option value="Formic_acid">Formic_acid</option> | |
| 69 <option value="V8-DE">V8-DE</option> | |
| 70 <option value="CNBr">CNBr</option> | |
| 71 <option value="proline endopeptidase">proline endopeptidase</option> | |
| 58 <option value="unspecific cleavage">unspecific cleavage</option> | 72 <option value="unspecific cleavage">unspecific cleavage</option> |
| 59 <option value="Formic_acid">Formic_acid</option> | 73 <option value="no cleavage">no cleavage</option> |
| 60 <option value="CNBr">CNBr</option> | |
| 61 <option value="Lys-C">Lys-C</option> | |
| 62 <option value="Trypsin" selected="true">Trypsin</option> | |
| 63 <option value="Arg-C">Arg-C</option> | |
| 64 <option value="proline endopeptidase">proline endopeptidase</option> | |
| 65 <option value="2-iodobenzoate">2-iodobenzoate</option> | 74 <option value="2-iodobenzoate">2-iodobenzoate</option> |
| 66 <option value="Lys-C/P">Lys-C/P</option> | 75 <option value="V8-E">V8-E</option> |
| 67 <option value="V8-DE">V8-DE</option> | |
| 68 <option value="leukocyte elastase">leukocyte elastase</option> | 76 <option value="leukocyte elastase">leukocyte elastase</option> |
| 69 <option value="Trypsin/P">Trypsin/P</option> | |
| 70 <option value="Chymotrypsin">Chymotrypsin</option> | |
| 71 <option value="V8-E">V8-E</option> | |
| 72 <option value="Asp-N">Asp-N</option> | |
| 73 <option value="PepsinA">PepsinA</option> | |
| 74 <option value="no cleavage">no cleavage</option> | |
| 75 <option value="Asp-N_ambic">Asp-N_ambic</option> | |
| 76 <option value="TrypChymo">TrypChymo</option> | |
| 77 </param> | 77 </param> |
| 78 <param name="param_motif" type="text" size="30" value="M" label="the motif for the restricted peptidome" help="(-motif) "> | 78 <param name="param_motif" type="text" size="30" value="M" label="the motif for the restricted peptidome" help="(-motif) "> |
| 79 <sanitizer> | 79 <sanitizer> |
| 80 <valid initial="string.printable"> | 80 <valid initial="string.printable"> |
| 81 <remove value="'"/> | 81 <remove value="'"/> |