diff FeatureFinderCentroided.xml @ 9:c56b544a3fb2 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/FeatureFinderCentroided.xml	Tue Mar 20 14:40:17 2018 -0400
+++ b/FeatureFinderCentroided.xml	Wed May 15 08:05:28 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>FeatureFinderCentroided
+  <command detect_errors="aggressive"><![CDATA[FeatureFinderCentroided
 
 #if $param_in:
   -in $param_in
@@ -123,7 +123,8 @@
   -algorithm:feature:max_intersection $adv_opts.param_algorithm_feature_max_intersection
 #end if
 #end if
-</command>
+-threads "\${GALAXY_SLOTS:-1}"
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
     <param name="param_seeds" type="data" format="featurexml" optional="True" label="User specified seed list" help="(-seeds) "/>
@@ -173,5 +174,5 @@
   <help>Detects two-dimensional features in LC-MS data.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FeatureFinderCentroided.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FeatureFinderCentroided.html</help>
 </tool>