diff test-data/FileFilter_1_input.mzML @ 8:d7f016292d95 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
author galaxyp
date Tue, 20 Mar 2018 14:40:17 -0400
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/FileFilter_1_input.mzML	Tue Mar 20 14:40:17 2018 -0400
@@ -0,0 +1,336 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+<mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" accession="" version="1.1.0">
+	<cvList count="2">
+		<cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
+		<cv id="UO" fullName="Unit Ontology" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
+	</cvList>
+	<fileDescription>
+		<fileContent>
+			<cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
+		</fileContent>
+		<contact>
+			<cvParam cvRef="MS" accession="MS:1000586" name="contact name" value=", " />
+			<cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="" />
+		</contact>
+	</fileDescription>
+	<sampleList count="1">
+		<sample id="sa_0" name="">
+			<cvParam cvRef="MS" accession="MS:1000004" name="sample mass" value="0"  unitAccession="UO:0000021" unitName="gram" unitCvRef="UO" />
+			<cvParam cvRef="MS" accession="MS:1000005" name="sample volume" value="0" unitAccession="UO:0000098" unitName="milliliter" unitCvRef="UO" />
+			<cvParam cvRef="MS" accession="MS:1000006" name="sample concentration" value="0" unitAccession="UO:0000175" unitName="gram per liter" unitCvRef="UO" />
+		</sample>
+	</sampleList>
+	<softwareList count="12">
+		<software id="so_in_0" version="" >
+			<cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
+		</software>
+		<software id="so_default" version="" >
+			<cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
+		</software>
+		<software id="so_dp_sp_0_pm_0" version="" >
+			<cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
+		</software>
+		<software id="so_dp_sp_0_pm_1" version="version_string" >
+			<cvParam cvRef="MS" accession="MS:1000756" name="FileConverter" />
+		</software>
+	</softwareList>
+	<instrumentConfigurationList count="1">
+		<instrumentConfiguration id="ic_0">
+			<cvParam cvRef="MS" accession="MS:1000031" name="instrument model" />
+			<componentList count="3">
+				<source order="0">
+					<cvParam cvRef="MS" accession="MS:1000008" name="ionization type" />
+				</source>
+				<analyzer order="0">
+					<cvParam cvRef="MS" accession="MS:1000014" name="accuracy" value="0" unitAccession="UO:0000169" unitName="parts per million" unitCvRef="UO" />
+					<cvParam cvRef="MS" accession="MS:1000022" name="TOF Total Path Length" value="0" unitAccession="UO:0000008" unitName="meter" unitCvRef="UO" />
+					<cvParam cvRef="MS" accession="MS:1000024" name="final MS exponent" value="0" />
+					<cvParam cvRef="MS" accession="MS:1000025" name="magnetic field strength" value="0" unitAccession="UO:0000228" unitName="tesla" unitCvRef="UO" />
+					<cvParam cvRef="MS" accession="MS:1000443" name="mass analyzer type" />
+				</analyzer>
+				<detector order="0">
+					<cvParam cvRef="MS" accession="MS:1000028" name="detector resolution" value="0" />
+					<cvParam cvRef="MS" accession="MS:1000029" name="sampling frequency" value="0" unitAccession="UO:0000106" unitName="hertz" unitCvRef="UO" />
+					<cvParam cvRef="MS" accession="MS:1000026" name="detector type" />
+				</detector>
+			</componentList>
+			<softwareRef ref="so_in_0" />
+		</instrumentConfiguration>
+	</instrumentConfigurationList>
+	<dataProcessingList count="10">
+		<dataProcessing id="dp_sp_0">
+			<processingMethod order="0" softwareRef="so_dp_sp_0_pm_0">
+				<cvParam cvRef="MS" accession="MS:1000543" name="data processing action" />
+			</processingMethod>
+			<processingMethod order="0" softwareRef="so_dp_sp_0_pm_1">
+				<cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" />
+				<cvParam cvRef="MS" accession="MS:1000747" name="completion time" value="1999-12-31+23:59" />
+				<userParam name="parameter: mode" type="xsd:string" value="test_mode"/>
+			</processingMethod>
+		</dataProcessing>
+	</dataProcessingList>
+	<run id="ru_0" defaultInstrumentConfigurationRef="ic_0" sampleRef="sa_0">
+		<spectrumList count="10" defaultDataProcessingRef="dp_sp_0">
+			<spectrum id="spectrum=1" index="0" defaultArrayLength="787" dataProcessingRef="dp_sp_0">
+				<cvParam cvRef="MS" accession="MS:1000525" name="spectrum representation" />
+				<cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1" />
+				<cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
+				<cvParam cvRef="MS" accession="MS:1000130" name="positive scan" />
+				<scanList count="1">
+					<cvParam cvRef="MS" accession="MS:1000795" name="no combination" />
+					<scan>
+						<cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="20.8713" unitAccession="UO:0000010" unitName="second" unitCvRef="UO" />
+					</scan>
+				</scanList>
+				<binaryDataArrayList count="2">
+					<binaryDataArray encodedLength="8396">
+						<cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
+						<cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" />
+						<cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
+						<binary>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+						<cvParam cvRef="MS" accession="MS:1000515" name="intensity array" unitAccession="MS:1000131" unitName="number of detector counts" unitCvRef="MS"/>
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