comparison FeatureFinderMRM.xml @ 13:9a9bbeefcd5d draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"

12:7407c66b08b4

      <param name="write_debug_files" argument="-algorithm:write_debug_files" type="boolean" truevalue="true" falsevalue="false" checked="false" label="If set to true, for each feature a plot will be created, in the subdirectory 'debug'" help=""/>
      <param name="resample_traces" argument="-algorithm:resample_traces" type="boolean" truevalue="true" falsevalue="false" checked="false" label="If set to true, each trace, which is in this case a part of the MRM monitoring trace with signal is resampled, using the minimal distance of two data points in RT dimension" help=""/>
      <param name="write_debuginfo" argument="-algorithm:write_debuginfo" type="boolean" truevalue="true" falsevalue="false" checked="false" label="If set to true, debug messages are written, the output can be somewhat lengthy" help=""/>
    </section>
    <expand macro="adv_opts_macro">
      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
      <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
        <expand macro="list_string_san"/>
      </param>
    </expand>
    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
      <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
    </param>
  </inputs>
  <outputs>
    <data name="out" label="${tool.name} on ${on_string}: out" format="featurexml"/>

    <expand macro="manutest_FeatureFinderMRM"/>
  </tests>
  <help><![CDATA[Detects two-dimensional features in LC-MS data.


For more information, visit http://www.openms.de/documentation/TOPP_FeatureFinderMRM.html]]></help>
  <expand macro="references"/>
</tool>

13:9a9bbeefcd5d

      <param name="write_debug_files" argument="-algorithm:write_debug_files" type="boolean" truevalue="true" falsevalue="false" checked="false" label="If set to true, for each feature a plot will be created, in the subdirectory 'debug'" help=""/>
      <param name="resample_traces" argument="-algorithm:resample_traces" type="boolean" truevalue="true" falsevalue="false" checked="false" label="If set to true, each trace, which is in this case a part of the MRM monitoring trace with signal is resampled, using the minimal distance of two data points in RT dimension" help=""/>
      <param name="write_debuginfo" argument="-algorithm:write_debuginfo" type="boolean" truevalue="true" falsevalue="false" checked="false" label="If set to true, debug messages are written, the output can be somewhat lengthy" help=""/>
    </section>
    <expand macro="adv_opts_macro">
      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
      <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
        <expand macro="list_string_san"/>
      </param>
    </expand>
    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
      <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
    </param>
  </inputs>
  <outputs>
    <data name="out" label="${tool.name} on ${on_string}: out" format="featurexml"/>

    <expand macro="manutest_FeatureFinderMRM"/>
  </tests>
  <help><![CDATA[Detects two-dimensional features in LC-MS data.


For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_FeatureFinderMRM.html]]></help>
  <expand macro="references"/>
</tool>