Mercurial > repos > galaxyp > openms_featurefindermultiplex
comparison FeatureFinderMultiplex.xml @ 10:e8651e585689 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
---|---|
date | Wed, 15 May 2019 08:13:39 -0400 |
parents | 954c0413acfb |
children | 3098bea02bd8 |
comparison
equal
deleted
inserted
replaced
9:954c0413acfb | 10:e8651e585689 |
---|---|
8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>FeatureFinderMultiplex | 13 <command detect_errors="aggressive"><![CDATA[FeatureFinderMultiplex |
14 | 14 |
15 #if $param_in: | 15 #if $param_in: |
16 -in $param_in | 16 -in $param_in |
17 #end if | 17 #end if |
18 #if $param_out: | 18 #if $param_out: |
130 #if $adv_opts.param_labels_ICPL10: | 130 #if $adv_opts.param_labels_ICPL10: |
131 -labels:ICPL10 $adv_opts.param_labels_ICPL10 | 131 -labels:ICPL10 $adv_opts.param_labels_ICPL10 |
132 #end if | 132 #end if |
133 #end if | 133 #end if |
134 -threads "\${GALAXY_SLOTS:-1}" | 134 -threads "\${GALAXY_SLOTS:-1}" |
135 </command> | 135 ]]></command> |
136 <inputs> | 136 <inputs> |
137 <param name="param_in" type="data" format="mzml" optional="False" label="LC-MS dataset in centroid or profile mode" help="(-in) "/> | 137 <param name="param_in" type="data" format="mzml" optional="False" label="LC-MS dataset in centroid or profile mode" help="(-in) "/> |
138 <param name="param_algorithm_labels" type="text" size="30" value="[][Lys8,Arg10]" label="Labels used for labelling the samples" help="(-labels) [...] specifies the labels for a single sample. For example <br> <br>[][Lys8,Arg10] ... SILAC <br>[][Lys4,Arg6][Lys8,Arg10] ... triple-SILAC <br>[Dimethyl0][Dimethyl6] ... Dimethyl <br>[Dimethyl0][Dimethyl4][Dimethyl8] ... triple Dimethyl <br>[ICPL0][ICPL4][ICPL6][ICPL10] ... ICPL"> | 138 <param name="param_algorithm_labels" type="text" size="30" value="[][Lys8,Arg10]" label="Labels used for labelling the samples" help="(-labels) [...] specifies the labels for a single sample. For example <br> <br>[][Lys8,Arg10] ... SILAC <br>[][Lys4,Arg6][Lys8,Arg10] ... triple-SILAC <br>[Dimethyl0][Dimethyl6] ... Dimethyl <br>[Dimethyl0][Dimethyl4][Dimethyl8] ... triple Dimethyl <br>[ICPL0][ICPL4][ICPL6][ICPL10] ... ICPL"> |
139 <sanitizer> | 139 <sanitizer> |
140 <valid initial="string.printable"> | 140 <valid initial="string.printable"> |
206 <data name="param_out_mzq" format="mzq" label="${tool.name} on ${on_string}: mzq"/> | 206 <data name="param_out_mzq" format="mzq" label="${tool.name} on ${on_string}: mzq"/> |
207 </outputs> | 207 </outputs> |
208 <help>Determination of peak ratios in LC-MS data | 208 <help>Determination of peak ratios in LC-MS data |
209 | 209 |
210 | 210 |
211 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FeatureFinderMultiplex.html</help> | 211 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FeatureFinderMultiplex.html</help> |
212 </tool> | 212 </tool> |