diff FidoAdapter.xml @ 9:d4965c549fd9 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/FidoAdapter.xml	Tue Mar 20 14:50:06 2018 -0400
+++ b/FidoAdapter.xml	Wed May 15 08:22:45 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>FidoAdapter
+  <command detect_errors="aggressive"><![CDATA[FidoAdapter
 -fidocp_executable FidoChooseParameters
 -fido_executable Fido
 
@@ -66,7 +66,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="idxml" optional="False" label="Input: identification results" help="(-in) "/>
     <param name="param_separate_runs" display="radio" type="boolean" truevalue="-separate_runs" falsevalue="" checked="false" optional="True" label="Process multiple protein identification runs in the input separately, don't merge them" help="(-separate_runs) Merging results in loss of descriptive information of the single protein identification runs"/>
@@ -96,5 +96,5 @@
   <help>Runs the protein inference engine Fido.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FidoAdapter.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FidoAdapter.html</help>
 </tool>