diff FileFilter.xml @ 9:348aec6301b1 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/FileFilter.xml	Tue Mar 20 14:29:29 2018 -0400
+++ b/FileFilter.xml	Wed May 15 07:54:36 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>FileFilter
+  <command detect_errors="aggressive"><![CDATA[FileFilter
 
 #if $param_in:
   -in $param_in
@@ -339,7 +339,7 @@
   -algorithm:SignalToNoise:noise_for_empty_window $adv_opts.param_algorithm_SignalToNoise_noise_for_empty_window
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml,featurexml,consensusxml" optional="False" label="Input file" help="(-in) "/>
     <param name="param_out_type" display="radio" type="select" optional="True" label="Output file type -- default: determined from file extension or content" help="(-out_type) ">
@@ -655,5 +655,5 @@
   <help>Extracts or manipulates portions of data from peak, feature or consensus-feature files.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileFilter.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_FileFilter.html</help>
 </tool>