Mercurial > repos > galaxyp > openms_fileinfo
comparison FileInfo.xml @ 0:a5e996f13660 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author | galaxyp |
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date | Wed, 01 Mar 2017 13:00:53 -0500 |
parents | |
children | 33fea32c92e0 |
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-1:000000000000 | 0:a5e996f13660 |
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1 <?xml version='1.0' encoding='UTF-8'?> | |
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | |
3 <!--Proposed Tool Section: [File Handling]--> | |
4 <tool id="FileInfo" name="FileInfo" version="2.1.0"> | |
5 <description>Shows basic information about the file, such as data ranges and file type.</description> | |
6 <macros> | |
7 <token name="@EXECUTABLE@">FileInfo</token> | |
8 <import>macros.xml</import> | |
9 </macros> | |
10 <expand macro="references"/> | |
11 <expand macro="stdio"/> | |
12 <expand macro="requirements"/> | |
13 <command>FileInfo | |
14 | |
15 #if $param_in: | |
16 -in $param_in | |
17 #end if | |
18 #if $param_out: | |
19 -out $param_out | |
20 #end if | |
21 #if $param_out_tsv: | |
22 -out_tsv $param_out_tsv | |
23 #end if | |
24 #if $param_m: | |
25 -m | |
26 #end if | |
27 #if $param_p: | |
28 -p | |
29 #end if | |
30 #if $param_s: | |
31 -s | |
32 #end if | |
33 #if $param_d: | |
34 -d | |
35 #end if | |
36 #if $param_c: | |
37 -c | |
38 #end if | |
39 #if $param_v: | |
40 -v | |
41 #end if | |
42 #if $param_i: | |
43 -i | |
44 #end if | |
45 #if $adv_opts.adv_opts_selector=='advanced': | |
46 #if $adv_opts.param_force: | |
47 -force | |
48 #end if | |
49 #end if | |
50 </command> | |
51 <inputs> | |
52 <param name="param_in" type="data" format="mgf,mzml,mzxml,idxml,pepxml,mzid,featurexml,consensusxml" optional="False" label="input file" help="(-in) "/> | |
53 <param name="param_m" display="radio" type="boolean" truevalue="-m" falsevalue="" checked="false" optional="True" label="Show meta information about the whole experiment" help="(-m) "/> | |
54 <param name="param_p" display="radio" type="boolean" truevalue="-p" falsevalue="" checked="false" optional="True" label="Shows data processing information" help="(-p) "/> | |
55 <param name="param_s" display="radio" type="boolean" truevalue="-s" falsevalue="" checked="false" optional="True" label="Computes a five-number statistics of intensities, qualities, and widths" help="(-s) "/> | |
56 <param name="param_d" display="radio" type="boolean" truevalue="-d" falsevalue="" checked="false" optional="True" label="Show detailed listing of all spectra and chromatograms (peak files only)" help="(-d) "/> | |
57 <param name="param_c" display="radio" type="boolean" truevalue="-c" falsevalue="" checked="false" optional="True" label="Check for corrupt data in the file (peak files only)" help="(-c) "/> | |
58 <param name="param_v" display="radio" type="boolean" truevalue="-v" falsevalue="" checked="false" optional="True" label="Validate the file only (for mzML, mzData, mzXML, featureXML, idXML, consensusXML, pepXML)" help="(-v) "/> | |
59 <param name="param_i" display="radio" type="boolean" truevalue="-i" falsevalue="" checked="false" optional="True" label="Check whether a given mzML file contains valid indices (conforming to the indexedmzML standard)" help="(-i) "/> | |
60 <expand macro="advanced_options"> | |
61 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> | |
62 </expand> | |
63 </inputs> | |
64 <outputs> | |
65 <data name="param_out" format="txt"/> | |
66 <data name="param_out_tsv" format="tabular"/> | |
67 </outputs> | |
68 <help>Shows basic information about the file, such as data ranges and file type. | |
69 | |
70 | |
71 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_FileInfo.html</help> | |
72 </tool> |