diff IDDecoyProbability.xml @ 9:6e015d261b45 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/IDDecoyProbability.xml	Tue Mar 20 14:46:09 2018 -0400
+++ b/IDDecoyProbability.xml	Wed May 15 08:15:40 2019 -0400
@@ -11,7 +11,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>IDDecoyProbability
+  <command detect_errors="aggressive"><![CDATA[IDDecoyProbability
 
 #if $param_in:
   -in $param_in
@@ -36,7 +36,7 @@
   -decoy_algorithm:lower_score_better_default_value_if_zero $adv_opts.param_decoy_algorithm_lower_score_better_default_value_if_zero
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="idxml" optional="True" label="Identification input of combined forward decoy search (reindex with PeptideIndexer first)" help="(-in) "/>
     <param name="param_fwd_in" type="data" format="idxml" optional="True" label="Identification input of forward run" help="(-fwd_in) "/>
@@ -54,5 +54,5 @@
 WARNING: This util is deprecated.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_IDDecoyProbability.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_IDDecoyProbability.html</help>
 </tool>