Mercurial > repos > galaxyp > openms_idfileconverter

annotate test-data/MzMLSplitter_output_part1.mzML @ 9:83cf7a4cd03c draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:51:22 -0400
parents 92d0f39d9b8f
children
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92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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1 <?xml version="1.0" encoding="ISO-8859-1"?>
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2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" accession="" version="1.1.0">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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4 <cvList count="5">
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5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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6 <cv id="UO" fullName="Unit Ontology" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
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7 <cv id="BTO" fullName="BrendaTissue545" version="unknown" URI="http://www.brenda-enzymes.info/ontology/tissue/tree/update/update_files/BrendaTissueOBO"/>
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8 <cv id="GO" fullName="Gene Ontology - Slim Versions" version="unknown" URI="http://www.geneontology.org/GO_slims/goslim_goa.obo"/>
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9 <cv id="PATO" fullName="Quality ontology" version="unknown" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/quality.obo"/>
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10 </cvList>
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11 <fileDescription>
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12 <fileContent>
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13 <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
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14 </fileContent>
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15 <contact>
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16 <cvParam cvRef="MS" accession="MS:1000586" name="contact name" value=", " />
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17 <cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="" />
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18 </contact>
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19 </fileDescription>
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20 <sampleList count="1">
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21 <sample id="sa_0" name="">
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22 <cvParam cvRef="MS" accession="MS:1000004" name="sample mass" value="0" unitAccession="UO:0000021" unitName="gram" unitCvRef="UO" />
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23 <cvParam cvRef="MS" accession="MS:1000005" name="sample volume" value="0" unitAccession="UO:0000098" unitName="milliliter" unitCvRef="UO" />
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24 <cvParam cvRef="MS" accession="MS:1000006" name="sample concentration" value="0" unitAccession="UO:0000175" unitName="gram per liter" unitCvRef="UO" />
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25 </sample>
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26 </sampleList>
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27 <softwareList count="4">
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28 <software id="so_in_0" version="" >
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29 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
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30 </software>
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31 <software id="so_default" version="" >
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32 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
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33 </software>
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34 <software id="so_dp_sp_0_pm_0" version="" >
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35 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
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36 </software>
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37 <software id="so_dp_sp_0_pm_1" version="version_string" >
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38 <cvParam cvRef="MS" accession="MS:1000756" name="FileConverter" />
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39 </software>
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40 </softwareList>
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41 <instrumentConfigurationList count="1">
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42 <instrumentConfiguration id="ic_0">
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43 <cvParam cvRef="MS" accession="MS:1000031" name="instrument model" />
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44 <componentList count="3">
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45 <source order="0">
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46 <cvParam cvRef="MS" accession="MS:1000008" name="ionization type" />
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47 </source>
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48 <analyzer order="0">
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49 <cvParam cvRef="MS" accession="MS:1000014" name="accuracy" value="0" unitAccession="UO:0000169" unitName="parts per million" unitCvRef="UO" />
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50 <cvParam cvRef="MS" accession="MS:1000022" name="TOF Total Path Length" value="0" unitAccession="UO:0000008" unitName="meter" unitCvRef="UO" />
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51 <cvParam cvRef="MS" accession="MS:1000024" name="final MS exponent" value="0" />
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52 <cvParam cvRef="MS" accession="MS:1000025" name="magnetic field strength" value="0" unitAccession="UO:0000228" unitName="tesla" unitCvRef="UO" />
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53 <cvParam cvRef="MS" accession="MS:1000443" name="mass analyzer type" />
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54 </analyzer>
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55 <detector order="0">
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56 <cvParam cvRef="MS" accession="MS:1000028" name="detector resolution" value="0" />
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57 <cvParam cvRef="MS" accession="MS:1000029" name="sampling frequency" value="0" unitAccession="UO:0000106" unitName="hertz" unitCvRef="UO" />
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58 <cvParam cvRef="MS" accession="MS:1000026" name="detector type" />
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59 </detector>
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60 </componentList>
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61 <softwareRef ref="so_in_0" />
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62 </instrumentConfiguration>
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63 </instrumentConfigurationList>
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64 <dataProcessingList count="1">
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65 <dataProcessing id="dp_sp_0">
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66 <processingMethod order="0" softwareRef="so_dp_sp_0_pm_0">
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67 <cvParam cvRef="MS" accession="MS:1000543" name="data processing action" />
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68 </processingMethod>
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69 <processingMethod order="0" softwareRef="so_dp_sp_0_pm_1">
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70 <cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" />
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71 <cvParam cvRef="MS" accession="MS:1000747" name="completion time" value="1999-12-31+23:59" />
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72 <userParam name="parameter: mode" type="xsd:string" value="test_mode"/>
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73 </processingMethod>
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74 </dataProcessing>
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75 </dataProcessingList>
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76 <run id="ru_0" defaultInstrumentConfigurationRef="ic_0" sampleRef="sa_0">
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77 <spectrumList count="5" defaultDataProcessingRef="dp_sp_0">
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78 <spectrum id="spectrum=1" index="0" defaultArrayLength="787" dataProcessingRef="dp_sp_0">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
diff changeset
79 <cvParam cvRef="MS" accession="MS:1000525" name="spectrum representation" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
diff changeset
80 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
diff changeset
81 <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
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82 <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
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83 <scanList count="1">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
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84 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
diff changeset
85 <scan >
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
diff changeset
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92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
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87 </scan>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
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diff changeset
88 </scanList>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
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89 <binaryDataArrayList count="2">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
diff changeset
90 <binaryDataArray encodedLength="8396">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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91 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
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92 <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
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93 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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94 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92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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parents:
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95 </binaryDataArray>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
diff changeset
96 <binaryDataArray encodedLength="4200">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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parents:
diff changeset
97 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" unitAccession="MS:1000131" unitName="number of detector counts" unitCvRef="MS"/>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
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98 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
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99 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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parents:
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92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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101 </binaryDataArray>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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102 </binaryDataArrayList>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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103 </spectrum>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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104 <spectrum id="spectrum=2" index="1" defaultArrayLength="683">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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105 <cvParam cvRef="MS" accession="MS:1000525" name="spectrum representation" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
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106 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
parents:
diff changeset
107 <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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108 <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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109 <scanList count="1">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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110 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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111 <scan >
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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112 <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="22.4373" unitAccession="UO:0000010" unitName="second" unitCvRef="UO" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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113 </scan>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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114 </scanList>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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115 <binaryDataArrayList count="2">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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116 <binaryDataArray encodedLength="7288">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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117 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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118 <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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119 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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121 </binaryDataArray>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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122 <binaryDataArray encodedLength="3644">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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123 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" unitAccession="MS:1000131" unitName="number of detector counts" unitCvRef="MS"/>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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124 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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125 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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127 </binaryDataArray>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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128 </binaryDataArrayList>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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129 </spectrum>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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130 <spectrum id="spectrum=3" index="2" defaultArrayLength="3">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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131 <cvParam cvRef="MS" accession="MS:1000525" name="spectrum representation" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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132 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="2" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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133 <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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134 <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" />
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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135 <scanList count="1">
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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218 </index>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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219 </indexList>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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220 <indexListOffset>36171</indexListOffset>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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221 <fileChecksum>0</fileChecksum>
92d0f39d9b8f planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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222 </indexedmzML>