comparison IDMapper.xml @ 13:2517c03f5cd3 draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"

12:0bdaa74d9a3a

    <section name="spectra" title="Additional options for mzML input" help="" expanded="false">
      <param name="_in" argument="-spectra:_in" type="data" format="mzml" optional="true" label="MS run used to annotated unidentified spectra to features or consensus features" help=" select mzml data sets(s)"/>
    </section>
    <expand macro="adv_opts_macro">
      <param name="ignore_charge" argument="-ignore_charge" type="boolean" truevalue="true" falsevalue="false" checked="false" label="For feature/consensus maps: Assign an ID independently of whether its charge state matches that of the (consensus) feature" help=""/>
      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
      <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
        <expand macro="list_string_san"/>
      </param>
    </expand>
    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
      <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
    </param>
  </inputs>
  <outputs>
    <data name="out" label="${tool.name} on ${on_string}: out" format_source="in" metadata_source="in"/>

    <expand macro="manutest_IDMapper"/>
  </tests>
  <help><![CDATA[Assigns protein/peptide identifications to features or consensus features.


For more information, visit http://www.openms.de/documentation/TOPP_IDMapper.html]]></help>
  <expand macro="references"/>
</tool>

13:2517c03f5cd3

    <section name="spectra" title="Additional options for mzML input" help="" expanded="false">
      <param name="_in" argument="-spectra:_in" type="data" format="mzml" optional="true" label="MS run used to annotated unidentified spectra to features or consensus features" help=" select mzml data sets(s)"/>
    </section>
    <expand macro="adv_opts_macro">
      <param name="ignore_charge" argument="-ignore_charge" type="boolean" truevalue="true" falsevalue="false" checked="false" label="For feature/consensus maps: Assign an ID independently of whether its charge state matches that of the (consensus) feature" help=""/>
      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
      <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
        <expand macro="list_string_san"/>
      </param>
    </expand>
    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
      <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
    </param>
  </inputs>
  <outputs>
    <data name="out" label="${tool.name} on ${on_string}: out" format_source="in" metadata_source="in"/>

    <expand macro="manutest_IDMapper"/>
  </tests>
  <help><![CDATA[Assigns protein/peptide identifications to features or consensus features.


For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_IDMapper.html]]></help>
  <expand macro="references"/>
</tool>