diff IDMapper.xml @ 9:d29bb4c9831e draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/IDMapper.xml	Tue Mar 20 14:46:49 2018 -0400
+++ b/IDMapper.xml	Wed May 15 08:16:23 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>IDMapper
+  <command detect_errors="aggressive"><![CDATA[IDMapper
 
 #if $param_id:
   -id $param_id
@@ -66,7 +66,7 @@
   -consensus:annotate_ids_with_subelements
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_id" type="data" format="mzid,idxml" optional="False" label="Protein/peptide identifications file" help="(-id) "/>
     <param name="param_in" type="data" format="featurexml,consensusxml,mzq" optional="False" label="Feature map/consensus map file" help="(-in) "/>
@@ -96,5 +96,5 @@
   <help>Assigns protein/peptide identifications to features or consensus features.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDMapper.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_IDMapper.html</help>
 </tool>