diff IDPosteriorErrorProbability.xml @ 12:711a081d80ba draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"

--- a/IDPosteriorErrorProbability.xml	Thu Sep 24 12:30:37 2020 +0000
+++ b/IDPosteriorErrorProbability.xml	Tue Oct 13 19:49:16 2020 +0000
@@ -78,13 +78,13 @@
     </section>
     <expand macro="adv_opts_macro">
       <param name="fdr_for_targets_smaller" argument="-fdr_for_targets_smaller" type="float" optional="true" value="0.05" label="Only used, when top_hits_only set" help="Additionally, target/decoy information should be available. The score_type must be q-value from an previous False Discovery Rate run"/>
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
-      <option value="out_plot_FLAG">out_plot (What to do with outliers:)</option>
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
+      <option value="out_plot_FLAG">out_plot (txt file (if gnuplot is available, a corresponding PDF will be created as well.))</option>
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -104,6 +104,6 @@
   <help><![CDATA[Estimates probabilities for incorrectly assigned peptide sequences and a set of search engine scores using a mixture model.
 
 
-For more information, visit http://www.openms.de/documentation/TOPP_IDPosteriorErrorProbability.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_IDPosteriorErrorProbability.html]]></help>
   <expand macro="references"/>
 </tool>