diff test-data/MetaProSIP_1_input.mzML @ 8:c127b9a4d64b draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
author galaxyp
date Tue, 20 Mar 2018 15:26:31 -0400
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/MetaProSIP_1_input.mzML	Tue Mar 20 15:26:31 2018 -0400
@@ -0,0 +1,2621 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+<indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd">
+<mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" accession="" version="1.1.0">
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+		<cv id="UO" fullName="Unit Ontology" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
+		<cv id="BTO" fullName="BrendaTissue545" version="unknown" URI="http://www.brenda-enzymes.info/ontology/tissue/tree/update/update_files/BrendaTissueOBO"/>
+		<cv id="GO" fullName="Gene Ontology - Slim Versions" version="unknown" URI="http://www.geneontology.org/GO_slims/goslim_goa.obo"/>
+		<cv id="PATO" fullName="Quality ontology" version="unknown" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/quality.obo"/>
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+				<userParam name="parameter: threads" type="xsd:integer" value="1"/>
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+						</scanWindowList>
+					</scan>
+				</scanList>
+				<precursorList count="1">
+					<precursor>
+						<isolationWindow>
+							<cvParam cvRef="MS" accession="MS:1000827" name="isolation window target m/z" value="669.67578125" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
+							<cvParam cvRef="MS" accession="MS:1000828" name="isolation window lower offset" value="2" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
+							<cvParam cvRef="MS" accession="MS:1000829" name="isolation window upper offset" value="2" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
+						</isolationWindow>
+						<selectedIonList count="1">
+							<selectedIon>
+								<cvParam cvRef="MS" accession="MS:1000744" name="selected ion m/z" value="669.67578125" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
+								<cvParam cvRef="MS" accession="MS:1000041" name="charge state" value="3" />
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+							</selectedIon>
+						</selectedIonList>
+						<activation>
+							<cvParam cvRef="MS" accession="MS:1000133" name="collision-induced dissociation" />
+							<cvParam cvRef="MS" accession="MS:1000045" name="collision energy" value="35"/>
+						</activation>
+					</precursor>
+				</precursorList>
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