Mercurial > repos > galaxyp > openms_idsplitter
diff IDSplitter.xml @ 0:dbaa707ce149 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author | galaxyp |
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date | Wed, 01 Mar 2017 12:59:00 -0500 |
parents | |
children | 4d4f6dd84d95 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/IDSplitter.xml Wed Mar 01 12:59:00 2017 -0500 @@ -0,0 +1,44 @@ +<?xml version='1.0' encoding='UTF-8'?> +<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> +<!--Proposed Tool Section: [Utilities]--> +<tool id="IDSplitter" name="IDSplitter" version="2.1.0"> + <description>Splits protein/peptide identifications off of annotated data files</description> + <macros> + <token name="@EXECUTABLE@">IDSplitter</token> + <import>macros.xml</import> + </macros> + <expand macro="references"/> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>IDSplitter + +#if $param_in: + -in $param_in +#end if +#if $param_out: + -out $param_out +#end if +#if $param_id_out: + -id_out $param_id_out +#end if +#if $adv_opts.adv_opts_selector=='advanced': + #if $adv_opts.param_force: + -force +#end if +#end if +</command> + <inputs> + <param name="param_in" type="data" format="featurexml,consensusxml,mzml" optional="False" label="Input file (data annotated with identifications)" help="(-in) "/> + <expand macro="advanced_options"> + <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> + </expand> + </inputs> + <outputs> + <data name="param_out" metadata_source="param_in" format="input"/> + <data name="param_id_out" format="idxml"/> + </outputs> + <help>Splits protein/peptide identifications off of annotated data files + + +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_IDSplitter.html</help> +</tool>