comparison IsobaricAnalyzer.xml @ 7:7d2ed325f2e5 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

6:4555b2965a82

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>IsobaricAnalyzer

#if $param_type:
  -type
  #if " " in str($param_type):
    "$param_type"

  #else
    $adv_opts.param_extraction_purity_interpolation
  #end if
#end if
#end if
</command>
  <inputs>
    <param name="param_type" type="select" optional="False" value="itraq4plex" label="Isobaric Quantitation method used in the experiment" help="(-type) ">
      <option value="itraq4plex" selected="true">itraq4plex</option>
      <option value="itraq8plex">itraq8plex</option>
      <option value="tmt10plex">tmt10plex</option>

    <data name="param_out" format="consensusxml"/>
  </outputs>
  <help>Calculates isobaric quantitative values for peptides


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IsobaricAnalyzer.html</help>
</tool>

7:7d2ed325f2e5

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[IsobaricAnalyzer

#if $param_type:
  -type
  #if " " in str($param_type):
    "$param_type"

  #else
    $adv_opts.param_extraction_purity_interpolation
  #end if
#end if
#end if
]]></command>
  <inputs>
    <param name="param_type" type="select" optional="False" value="itraq4plex" label="Isobaric Quantitation method used in the experiment" help="(-type) ">
      <option value="itraq4plex" selected="true">itraq4plex</option>
      <option value="itraq8plex">itraq8plex</option>
      <option value="tmt10plex">tmt10plex</option>

    <data name="param_out" format="consensusxml"/>
  </outputs>
  <help>Calculates isobaric quantitative values for peptides


For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_IsobaricAnalyzer.html</help>
</tool>