diff LabeledEval.xml @ 0:ee49f806140b draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/LabeledEval.xml	Wed Mar 01 12:51:37 2017 -0500
@@ -0,0 +1,50 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--Proposed Tool Section: [Utilities]-->
+<tool id="LabeledEval" name="LabeledEval" version="2.1.0">
+  <description> Evaluation tool for isotope-labeled quantitation experiments.</description>
+  <macros>
+    <token name="@EXECUTABLE@">LabeledEval</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="references"/>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>LabeledEval
+
+#if $param_in:
+  -in $param_in
+#end if
+#if $param_truth:
+  -truth $param_truth
+#end if
+#if $param_rt_tol:
+  -rt_tol $param_rt_tol
+#end if
+#if $param_mz_tol:
+  -mz_tol $param_mz_tol
+#end if
+#if $adv_opts.adv_opts_selector=='advanced':
+    #if $adv_opts.param_force:
+  -force
+#end if
+#end if
+&gt; $param_stdout
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="featurexml" optional="False" label="Feature result file" help="(-in) "/>
+    <param name="param_truth" type="data" format="consensusxml" optional="False" label="Expected result file" help="(-truth) "/>
+    <param name="param_rt_tol" type="float" value="20.0" label="Maximum allowed retention time deviation" help="(-rt_tol) "/>
+    <param name="param_mz_tol" type="float" value="0.25" label="Maximum allowed m/z deviation (divided by charge)" help="(-mz_tol) "/>
+    <expand macro="advanced_options">
+      <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
+    </expand>
+  </inputs>
+  <outputs>
+    <data name="param_stdout" format="text" label="Output from stdout"/>
+  </outputs>
+  <help> Evaluation tool for isotope-labeled quantitation experiments.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_LabeledEval.html</help>
+</tool>