Mercurial > repos > galaxyp > openms_lowmempeakpickerhires_randomaccess
comparison tool.conf @ 1:a8056fdb4dd8 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author | galaxyp |
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date | Wed, 09 Aug 2017 09:32:33 -0400 |
parents | 5a0ab644f822 |
children |
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0:5a0ab644f822 | 1:a8056fdb4dd8 |
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4 <tool file="openms/PTModel.xml"/> | 4 <tool file="openms/PTModel.xml"/> |
5 <tool file="openms/PTPredict.xml"/> | 5 <tool file="openms/PTPredict.xml"/> |
6 <tool file="openms/RTModel.xml"/> | 6 <tool file="openms/RTModel.xml"/> |
7 <tool file="openms/RTPredict.xml"/> | 7 <tool file="openms/RTPredict.xml"/> |
8 </section> | 8 </section> |
9 <section id="section-id-DEFAULT" name="DEFAULT"> | |
10 <tool file="openms/OpenSwathFileSplitter.xml"/> | |
11 <tool file="openms/OpenSwathMzMLFileCacher.xml"/> | |
12 </section> | |
13 <section id="section-id-TargetedExperiments" name="Targeted Experiments"> | 9 <section id="section-id-TargetedExperiments" name="Targeted Experiments"> |
14 <tool file="openms/ConvertTraMLToTSV.xml"/> | |
15 <tool file="openms/ConvertTSVToTraML.xml"/> | |
16 <tool file="openms/InclusionExclusionListCreator.xml"/> | 10 <tool file="openms/InclusionExclusionListCreator.xml"/> |
17 <tool file="openms/MRMMapper.xml"/> | 11 <tool file="openms/MRMMapper.xml"/> |
18 <tool file="openms/OpenSwathAnalyzer.xml"/> | 12 <tool file="openms/OpenSwathAnalyzer.xml"/> |
19 <tool file="openms/OpenSwathAssayGenerator.xml"/> | 13 <tool file="openms/OpenSwathAssayGenerator.xml"/> |
20 <tool file="openms/OpenSwathChromatogramExtractor.xml"/> | 14 <tool file="openms/OpenSwathChromatogramExtractor.xml"/> |
21 <tool file="openms/OpenSwathConfidenceScoring.xml"/> | 15 <tool file="openms/OpenSwathConfidenceScoring.xml"/> |
22 <tool file="openms/OpenSwathDecoyGenerator.xml"/> | 16 <tool file="openms/OpenSwathDecoyGenerator.xml"/> |
23 <tool file="openms/OpenSwathDIAPreScoring.xml"/> | 17 <tool file="openms/OpenSwathDIAPreScoring.xml"/> |
24 <tool file="openms/OpenSwathFeatureXMLToTSV.xml"/> | 18 <tool file="openms/OpenSwathFeatureXMLToTSV.xml"/> |
19 <tool file="openms/OpenSwathFileSplitter.xml"/> | |
20 <tool file="openms/OpenSwathMzMLFileCacher.xml"/> | |
25 <tool file="openms/OpenSwathRewriteToFeatureXML.xml"/> | 21 <tool file="openms/OpenSwathRewriteToFeatureXML.xml"/> |
26 <tool file="openms/OpenSwathRTNormalizer.xml"/> | 22 <tool file="openms/OpenSwathRTNormalizer.xml"/> |
27 <tool file="openms/PrecursorIonSelector.xml"/> | 23 <tool file="openms/PrecursorIonSelector.xml"/> |
24 <tool file="openms/TargetedFileConverter.xml"/> | |
28 </section> | 25 </section> |
29 <section id="section-id-Utilities" name="Utilities"> | 26 <section id="section-id-Utilities" name="Utilities"> |
30 <tool file="openms/AccurateMassSearch.xml"/> | 27 <tool file="openms/AccurateMassSearch.xml"/> |
31 <tool file="openms/CVInspector.xml"/> | 28 <tool file="openms/CVInspector.xml"/> |
29 <tool file="openms/DatabaseFilter.xml"/> | |
32 <tool file="openms/DecoyDatabase.xml"/> | 30 <tool file="openms/DecoyDatabase.xml"/> |
33 <tool file="openms/DeMeanderize.xml"/> | 31 <tool file="openms/DeMeanderize.xml"/> |
34 <tool file="openms/Digestor.xml"/> | 32 <tool file="openms/Digestor.xml"/> |
35 <tool file="openms/DigestorMotif.xml"/> | 33 <tool file="openms/DigestorMotif.xml"/> |
36 <tool file="openms/ERPairFinder.xml"/> | 34 <tool file="openms/ERPairFinder.xml"/> |
42 <tool file="openms/IDScoreSwitcher.xml"/> | 40 <tool file="openms/IDScoreSwitcher.xml"/> |
43 <tool file="openms/IDSplitter.xml"/> | 41 <tool file="openms/IDSplitter.xml"/> |
44 <tool file="openms/LabeledEval.xml"/> | 42 <tool file="openms/LabeledEval.xml"/> |
45 <tool file="openms/LowMemPeakPickerHiRes.xml"/> | 43 <tool file="openms/LowMemPeakPickerHiRes.xml"/> |
46 <tool file="openms/LowMemPeakPickerHiRes_RandomAccess.xml"/> | 44 <tool file="openms/LowMemPeakPickerHiRes_RandomAccess.xml"/> |
47 <tool file="openms/MapAlignmentEvaluation.xml"/> | |
48 <tool file="openms/MassCalculator.xml"/> | 45 <tool file="openms/MassCalculator.xml"/> |
49 <tool file="openms/MetaboliteSpectralMatcher.xml"/> | 46 <tool file="openms/MetaboliteSpectralMatcher.xml"/> |
50 <tool file="openms/MetaProSIP.xml"/> | 47 <tool file="openms/MetaProSIP.xml"/> |
51 <tool file="openms/MRMPairFinder.xml"/> | 48 <tool file="openms/MRMPairFinder.xml"/> |
52 <tool file="openms/MRMTransitionGroupPicker.xml"/> | 49 <tool file="openms/MRMTransitionGroupPicker.xml"/> |
60 <tool file="openms/QCExtractor.xml"/> | 57 <tool file="openms/QCExtractor.xml"/> |
61 <tool file="openms/QCImporter.xml"/> | 58 <tool file="openms/QCImporter.xml"/> |
62 <tool file="openms/QCMerger.xml"/> | 59 <tool file="openms/QCMerger.xml"/> |
63 <tool file="openms/QCShrinker.xml"/> | 60 <tool file="openms/QCShrinker.xml"/> |
64 <tool file="openms/RNPxl.xml"/> | 61 <tool file="openms/RNPxl.xml"/> |
62 <tool file="openms/RNPxlSearch.xml"/> | |
65 <tool file="openms/RNPxlXICFilter.xml"/> | 63 <tool file="openms/RNPxlXICFilter.xml"/> |
66 <tool file="openms/RTEvaluation.xml"/> | 64 <tool file="openms/RTEvaluation.xml"/> |
67 <tool file="openms/SemanticValidator.xml"/> | 65 <tool file="openms/SemanticValidator.xml"/> |
68 <tool file="openms/SequenceCoverageCalculator.xml"/> | 66 <tool file="openms/SequenceCoverageCalculator.xml"/> |
69 <tool file="openms/SimpleSearchEngine.xml"/> | 67 <tool file="openms/SimpleSearchEngine.xml"/> |
70 <tool file="openms/SpecLibCreator.xml"/> | 68 <tool file="openms/SpecLibCreator.xml"/> |
69 <tool file="openms/SpectraSTSearchAdapter.xml"/> | |
71 <tool file="openms/SvmTheoreticalSpectrumGeneratorTrainer.xml"/> | 70 <tool file="openms/SvmTheoreticalSpectrumGeneratorTrainer.xml"/> |
72 <tool file="openms/TICCalculator.xml"/> | 71 <tool file="openms/TICCalculator.xml"/> |
73 <tool file="openms/TopPerc.xml"/> | 72 <tool file="openms/TopPerc.xml"/> |
74 <tool file="openms/TransformationEvaluation.xml"/> | 73 <tool file="openms/TransformationEvaluation.xml"/> |
75 <tool file="openms/XMLValidator.xml"/> | 74 <tool file="openms/XMLValidator.xml"/> |
76 </section> | 75 </section> |
77 <section id="section-id-MapAlignment" name="Map Alignment"> | 76 <section id="section-id-MapAlignment" name="Map Alignment"> |
78 <tool file="openms/ConsensusMapNormalizer.xml"/> | 77 <tool file="openms/ConsensusMapNormalizer.xml"/> |
79 <tool file="openms/FeatureLinkerLabeled.xml"/> | 78 <tool file="openms/FeatureLinkerLabeled.xml"/> |
80 <tool file="openms/FeatureLinkerUnlabeled.xml"/> | 79 <tool file="openms/FeatureLinkerUnlabeled.xml"/> |
80 <tool file="openms/FeatureLinkerUnlabeledKD.xml"/> | |
81 <tool file="openms/FeatureLinkerUnlabeledQT.xml"/> | 81 <tool file="openms/FeatureLinkerUnlabeledQT.xml"/> |
82 <tool file="openms/MapRTTransformer.xml"/> | 82 <tool file="openms/MapRTTransformer.xml"/> |
83 </section> | 83 </section> |
84 <section id="section-id-IDProcessing" name="ID Processing"> | 84 <section id="section-id-IDProcessing" name="ID Processing"> |
85 <tool file="openms/ConsensusID.xml"/> | 85 <tool file="openms/ConsensusID.xml"/> |
152 <tool file="openms/FeatureFinderMetabo.xml"/> | 152 <tool file="openms/FeatureFinderMetabo.xml"/> |
153 <tool file="openms/FeatureFinderMRM.xml"/> | 153 <tool file="openms/FeatureFinderMRM.xml"/> |
154 <tool file="openms/FeatureFinderMultiplex.xml"/> | 154 <tool file="openms/FeatureFinderMultiplex.xml"/> |
155 <tool file="openms/FeatureFinderSuperHirn.xml"/> | 155 <tool file="openms/FeatureFinderSuperHirn.xml"/> |
156 <tool file="openms/IsobaricAnalyzer.xml"/> | 156 <tool file="openms/IsobaricAnalyzer.xml"/> |
157 <tool file="openms/ITRAQAnalyzer.xml"/> | |
158 <tool file="openms/ProteinQuantifier.xml"/> | 157 <tool file="openms/ProteinQuantifier.xml"/> |
159 <tool file="openms/ProteinResolver.xml"/> | 158 <tool file="openms/ProteinResolver.xml"/> |
160 <tool file="openms/TMTAnalyzer.xml"/> | |
161 </section> | 159 </section> |
162 </toolbox> | 160 </toolbox> |