Mercurial > repos > galaxyp > openms_lowmempeakpickerhiresrandomaccess
comparison filetypes.txt @ 0:4cfd0b909d6e draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
author | galaxyp |
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date | Wed, 09 Sep 2020 20:08:56 +0000 |
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-1:000000000000 | 0:4cfd0b909d6e |
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1 # CTD type # Galaxy type | |
2 # the following lines need to be at the top in order to ensure | |
3 # correct translation Galaxy->CTD type for the ambiguous cases | |
4 # (should only be relevant for the autogenerated tests [which | |
5 # do not set the ftype of the inputs]) | |
6 txt txt | |
7 tsv tabular | |
8 | |
9 ##analysisXML | |
10 # XTandemAdapter output is named xml in OMS (which is to unspecific) and bioml in Galaxy .. so this is renamed via hardcoded parameters | |
11 bioml xml | |
12 consensusXML consensusxml | |
13 # TODO csv is problematic, since csv often actually means tsv .. but not always | |
14 csv csv | |
15 ##dat | |
16 dta dta | |
17 dta2d dta2d | |
18 edta edta | |
19 fa fasta | |
20 fas fasta | |
21 fasta fasta | |
22 FASTA fasta | |
23 featureXML featurexml | |
24 featurexml featurexml | |
25 # fid | |
26 html html | |
27 HTML html | |
28 idXML idxml | |
29 ##ini txt | |
30 json json | |
31 kroenik kroenik | |
32 mascotXML mascotxml | |
33 mgf mgf | |
34 mrm mrm | |
35 ms sirius.ms | |
36 ms2 ms2 | |
37 msp msp | |
38 mzData mzdata | |
39 mzid mzid | |
40 # important to have mzML first, since LuciphorAdapter is case sensitive https://github.com/OpenMS/OpenMS/issues/4444 | |
41 mzML mzml | |
42 mzml mzml | |
43 mzq mzq | |
44 mzTab mztab | |
45 mzXML mzxml | |
46 novor txt | |
47 obo obo | |
48 # I guess this is the idXML output of omssa | |
49 omssaXML idxml | |
50 osw osw | |
51 OSW osw | |
52 params txt | |
53 paramXML paramxml | |
54 fasta peff | |
55 peplist peplist | |
56 # TODO pep.xml should be removed with OMS 2.6 https://github.com/OpenMS/OpenMS/pull/4541 | |
57 pep.xml pepxml | |
58 pepXML pepxml | |
59 png png | |
60 PNG png | |
61 protXML protxml | |
62 psms psms | |
63 # TODO implement or use | |
64 # psq | |
65 pqp pqp | |
66 qcML qcml | |
67 spec.xml spec.xml | |
68 splib splib | |
69 sqMass sqmass | |
70 tandem.xml tandem | |
71 trafoXML trafoxml | |
72 traML traml | |
73 TraML traml | |
74 tab tabular | |
75 ## MOVED TO TOP txt txt | |
76 raw thermo.raw | |
77 ## xls: SpectraSTSearchAdapter https://github.com/OpenMS/OpenMS/pull/4419 | |
78 xls tsv | |
79 XML xml | |
80 xml xml | |
81 xquest.xml xquest.xml | |
82 xsd xml | |
83 | |
84 # TODO needs to be implemented, needs to be below xml in order that Galaxy->OMS mapping gives xml | |
85 # cachedMzML xml |