annotate test-data/MzMLSplitter_output_part2.mzML @ 2:3ba382706e89 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:41:08 -0400
parents 8751db99e4bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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1 <?xml version="1.0" encoding="ISO-8859-1"?>
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2 <indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd">
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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3 <mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" accession="" version="1.1.0">
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4 <cvList count="5">
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5 <cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
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6 <cv id="UO" fullName="Unit Ontology" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
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7 <cv id="BTO" fullName="BrendaTissue545" version="unknown" URI="http://www.brenda-enzymes.info/ontology/tissue/tree/update/update_files/BrendaTissueOBO"/>
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8 <cv id="GO" fullName="Gene Ontology - Slim Versions" version="unknown" URI="http://www.geneontology.org/GO_slims/goslim_goa.obo"/>
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9 <cv id="PATO" fullName="Quality ontology" version="unknown" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/quality.obo"/>
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10 </cvList>
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11 <fileDescription>
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12 <fileContent>
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14 </fileContent>
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15 <contact>
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18 </contact>
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19 </fileDescription>
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20 <sampleList count="1">
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21 <sample id="sa_0" name="">
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25 </sample>
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26 </sampleList>
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27 <softwareList count="4">
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28 <software id="so_in_0" version="" >
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30 </software>
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31 <software id="so_default" version="" >
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32 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
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33 </software>
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34 <software id="so_dp_sp_0_pm_0" version="" >
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35 <cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
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36 </software>
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37 <software id="so_dp_sp_0_pm_1" version="version_string" >
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39 </software>
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40 </softwareList>
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41 <instrumentConfigurationList count="1">
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42 <instrumentConfiguration id="ic_0">
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44 <componentList count="3">
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45 <source order="0">
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47 </source>
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48 <analyzer order="0">
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54 </analyzer>
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55 <detector order="0">
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59 </detector>
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60 </componentList>
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61 <softwareRef ref="so_in_0" />
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62 </instrumentConfiguration>
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63 </instrumentConfigurationList>
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64 <dataProcessingList count="1">
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65 <dataProcessing id="dp_sp_0">
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66 <processingMethod order="0" softwareRef="so_dp_sp_0_pm_0">
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68 </processingMethod>
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69 <processingMethod order="0" softwareRef="so_dp_sp_0_pm_1">
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73 </processingMethod>
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74 </dataProcessing>
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75 </dataProcessingList>
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76 <run id="ru_0" defaultInstrumentConfigurationRef="ic_0" sampleRef="sa_0">
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77 <spectrumList count="5" defaultDataProcessingRef="dp_sp_0">
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78 <spectrum id="spectrum=6" index="0" defaultArrayLength="885" dataProcessingRef="dp_sp_0">
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80 <cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1" />
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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81 <cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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82 <cvParam cvRef="MS" accession="MS:1000130" name="positive scan" />
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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83 <scanList count="1">
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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84 <cvParam cvRef="MS" accession="MS:1000795" name="no combination" />
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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85 <scan >
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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86 <cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="31.2627" unitAccession="UO:0000010" unitName="second" unitCvRef="UO" />
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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87 </scan>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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88 </scanList>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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89 <binaryDataArrayList count="2">
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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90 <binaryDataArray encodedLength="9440">
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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91 <cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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92 <cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" />
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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93 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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94 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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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95 </binaryDataArray>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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parents:
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96 <binaryDataArray encodedLength="4720">
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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97 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" unitAccession="MS:1000131" unitName="number of detector counts" unitCvRef="MS"/>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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98 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" />
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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99 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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199 </binaryDataArray>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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parents:
diff changeset
200 <binaryDataArray encodedLength="4072">
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
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201 <cvParam cvRef="MS" accession="MS:1000515" name="intensity array" unitAccession="MS:1000131" unitName="number of detector counts" unitCvRef="MS"/>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
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202 <cvParam cvRef="MS" accession="MS:1000521" name="32-bit float" />
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
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diff changeset
203 <cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
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8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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diff changeset
205 </binaryDataArray>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
galaxyp
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206 </binaryDataArrayList>
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207 </spectrum>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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208 </spectrumList>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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209 </run>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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210 </mzML>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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211 <indexList count="1">
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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212 <index name="spectrum">
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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213 <offset idRef="spectrum=6">4899</offset>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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214 <offset idRef="spectrum=7">20575</offset>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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215 <offset idRef="spectrum=8">22141</offset>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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216 <offset idRef="spectrum=9">23739</offset>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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217 <offset idRef="spectrum=10">25269</offset>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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218 </index>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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219 </indexList>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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220 <indexListOffset>39000</indexListOffset>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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221 <fileChecksum>0</fileChecksum>
8751db99e4bb planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
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222 </indexedmzML>