Mercurial > repos > galaxyp > openms_mascotadapter
annotate tool-data/pepnovo_models.loc.sample @ 13:27e308170367 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
author | galaxyp |
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date | Thu, 01 Dec 2022 19:12:19 +0000 |
parents | fb751f9c050b |
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rev | line source |
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fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
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1 # This is a sample file distributed with Galaxy that enables tools |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
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2 # to use pepnovo models |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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3 # The file has three tab separated columns: name, value, and path. |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
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4 # The idea is that there are a number of models in a directory: |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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5 # - each model directory has a unique name (columns 2 and 0) |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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6 # - each model can contain a set of models (column 1) |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
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7 # |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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8 # The following example works fo the default models from |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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9 # http://proteomics.ucsd.edu/Software/PepNovo.html (just remove the comment |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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10 # chars and replace DIR_TO_PEPNOVO_MODELS) |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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11 |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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12 #default_models CID_IT_TRYP DIR_TO_PEPNOVO_MODELS |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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13 #default_models LTQ_COMP DIR_TO_PEPNOVO_MODELS |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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14 #default_models DBC4_PEAK DIR_TO_PEPNOVO_MODELS |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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15 #default_models CID_IT_TRYP_TAG5 DIR_TO_PEPNOVO_MODELS |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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16 #default_models CID_IT_TRYP_TAG6 DIR_TO_PEPNOVO_MODELS |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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17 #default_models ITDNV_PEAK DIR_TO_PEPNOVO_MODELS |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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18 #default_models CID_IT_TRYP_SCORE DIR_TO_PEPNOVO_MODELS |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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19 #default_models CID_IT_TRYP_TAG3 DIR_TO_PEPNOVO_MODELS |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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20 #default_models CID_IT_TRYP_DNVPART DIR_TO_PEPNOVO_MODELS |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
|
21 #default_models CID_IT_TRYP_TAG4 DIR_TO_PEPNOVO_MODELS |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
|
22 #default_models CID_IT_TRYP_DB DIR_TO_PEPNOVO_MODELS |
fb751f9c050b
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 020906fb54bde7fc143c356f41975c378a741315"
galaxyp
parents:
diff
changeset
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23 #default_models CID_IT_TRYP_CSP DIR_TO_PEPNOVO_MODELS |