diff MascotAdapter.xml @ 7:fd960d61b64d draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/MascotAdapter.xml	Tue Mar 20 14:38:56 2018 -0400
+++ b/MascotAdapter.xml	Wed May 15 08:03:42 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>MascotAdapter
+  <command detect_errors="aggressive"><![CDATA[MascotAdapter
 
 #if $param_in:
   -in $param_in
@@ -140,7 +140,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="txt" label="input file in mzData format" help="(-in) &lt;br&gt;Note: In mode 'mascot_out' a Mascot results file (.mascotXML) is read"/>
     <param name="param_mascot_in" display="radio" type="boolean" truevalue="-mascot_in" falsevalue="" checked="false" optional="True" label="if this flag is set the MascotAdapter will read in mzData and write Mascot generic format" help="(-mascot_in) "/>
@@ -337,5 +337,5 @@
   <help>Annotates MS/MS spectra using Mascot.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MascotAdapter.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_MascotAdapter.html</help>
 </tool>