Mercurial > repos > galaxyp > openms_masscalculator
comparison MassCalculator.xml @ 1:7d95120eee87 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
| author | galaxyp |
|---|---|
| date | Wed, 09 Aug 2017 10:02:01 -0400 |
| parents | ca71813dee8a |
| children | 7db481946a90 |
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| 0:ca71813dee8a | 1:7d95120eee87 |
|---|---|
| 1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> |
| 3 <!--Proposed Tool Section: [Utilities]--> | 3 <!--Proposed Tool Section: [Utilities]--> |
| 4 <tool id="MassCalculator" name="MassCalculator" version="2.1.0"> | 4 <tool id="MassCalculator" name="MassCalculator" version="2.2.0"> |
| 5 <description>Calculates masses and mass-to-charge ratios of peptide sequences</description> | 5 <description>Calculates masses and mass-to-charge ratios of peptide sequences</description> |
| 6 <macros> | 6 <macros> |
| 7 <token name="@EXECUTABLE@">MassCalculator</token> | 7 <token name="@EXECUTABLE@">MassCalculator</token> |
| 8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
| 9 </macros> | 9 </macros> |
| 39 $token.param_charge | 39 $token.param_charge |
| 40 #end if | 40 #end if |
| 41 #end for | 41 #end for |
| 42 #end if | 42 #end if |
| 43 #if $param_format: | 43 #if $param_format: |
| 44 -format $param_format | 44 -format |
| 45 #if " " in str($param_format): | |
| 46 "$param_format" | |
| 47 #else | |
| 48 $param_format | |
| 49 #end if | |
| 45 #end if | 50 #end if |
| 46 #if $param_average_mass: | 51 #if $param_average_mass: |
| 47 -average_mass | 52 -average_mass |
| 48 #end if | 53 #end if |
| 49 #if $param_fragment_type: | 54 #if $param_fragment_type: |
| 50 -fragment_type $param_fragment_type | 55 -fragment_type |
| 56 #if " " in str($param_fragment_type): | |
| 57 "$param_fragment_type" | |
| 58 #else | |
| 59 $param_fragment_type | |
| 60 #end if | |
| 51 #end if | 61 #end if |
| 52 #if $param_separator: | 62 #if $param_separator: |
| 53 -separator "$param_separator" | 63 -separator "$param_separator" |
| 54 #end if | 64 #end if |
| 55 #if $adv_opts.adv_opts_selector=='advanced': | 65 #if $adv_opts.adv_opts_selector=='advanced': |