diff MassCalculator.xml @ 1:7d95120eee87 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14

--- a/MassCalculator.xml	Wed Mar 01 13:00:37 2017 -0500
+++ b/MassCalculator.xml	Wed Aug 09 10:02:01 2017 -0400
@@ -1,7 +1,7 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
 <!--Proposed Tool Section: [Utilities]-->
-<tool id="MassCalculator" name="MassCalculator" version="2.1.0">
+<tool id="MassCalculator" name="MassCalculator" version="2.2.0">
   <description>Calculates masses and mass-to-charge ratios of peptide sequences</description>
   <macros>
     <token name="@EXECUTABLE@">MassCalculator</token>
@@ -41,13 +41,23 @@
   #end for
 #end if
 #if $param_format:
-  -format $param_format
+  -format
+  #if " " in str($param_format):
+    "$param_format"
+  #else
+    $param_format
+  #end if
 #end if
 #if $param_average_mass:
   -average_mass
 #end if
 #if $param_fragment_type:
-  -fragment_type $param_fragment_type
+  -fragment_type
+  #if " " in str($param_fragment_type):
+    "$param_fragment_type"
+  #else
+    $param_fragment_type
+  #end if
 #end if
 #if $param_separator:
   -separator     "$param_separator"