diff MassTraceExtractor.xml @ 7:e059a211406b draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/MassTraceExtractor.xml	Tue Mar 20 15:12:11 2018 -0400
+++ b/MassTraceExtractor.xml	Fri May 17 04:49:11 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>MassTraceExtractor
+  <command detect_errors="aggressive"><![CDATA[MassTraceExtractor
 
 #if $param_in:
   -in $param_in
@@ -104,7 +104,7 @@
   -algorithm:epd:masstrace_snr_filtering
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="input centroided mzML file" help="(-in) "/>
     <param name="param_out_type" display="radio" type="select" optional="True" label="output file type -- default: determined from file extension or content" help="(-out_type) ">
@@ -153,5 +153,5 @@
   <help>Detects mass traces in centroided LC-MS data.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MassTraceExtractor.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_MassTraceExtractor.html</help>
 </tool>