Mercurial > repos > galaxyp > openms_metabolitespectralmatcher

view OMSSAAdapter.patch @ 10:6950572aae5a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e9568c650259d95b230d1a243e90f73a19564c2"
author galaxyp
date Thu, 24 Sep 2020 09:57:35 +0000
parents 7b5df538705e
children
line wrap: on
line source

--- OMSSAAdapter.xml	2020-06-16 15:51:40.315400730 +0200
+++ /tmp/OMSSAAdapter.xml	2020-06-16 15:50:23.536086074 +0200
@@ -22,6 +22,7 @@
 mkdir database &&
 ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
 
+makeblastdb -dbtype prot -in 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
 ## Main program call
 
 set -o pipefail &&