Mercurial > repos > galaxyp > openms_mrmmapper

diff MRMMapper.xml @ 7:305bf5edf3ce draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 07:57:35 -0400
parents f74d3da5abd2
children 9a62bfe7661d
line wrap: on
line diff
--- a/MRMMapper.xml	Tue Mar 20 14:32:31 2018 -0400
+++ b/MRMMapper.xml	Wed May 15 07:57:35 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>MRMMapper
+  <command detect_errors="aggressive"><![CDATA[MRMMapper
 
 #if $param_in:
   -in $param_in
@@ -38,7 +38,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="Input file containing chromatograms (converted mzXML file)" help="(-in) "/>
     <param name="param_tr" type="data" format="traml" optional="False" label="transition file" help="(-tr) "/>
@@ -56,5 +56,5 @@
   <help>MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML)
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_MRMMapper.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_MRMMapper.html</help>
 </tool>