diff MRMPairFinder.xml @ 7:0369ed5ff70e draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty

--- a/MRMPairFinder.xml	Tue Mar 20 15:28:49 2018 -0400
+++ b/MRMPairFinder.xml	Fri May 17 10:26:24 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>MRMPairFinder
+  <command detect_errors="aggressive"><![CDATA[MRMPairFinder
 
 #if $param_in:
   -in $param_in
@@ -38,7 +38,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="featurexml" optional="False" label="Input featureXML file containing the features of the MRM experiment spectra" help="(-in) "/>
     <param name="param_pair_in" type="data" format="tabular" optional="False" label="Pair-file in the format: prec-m/z-light prec-m/z-heavy frag-m/z-light frag-m/z-heavy rt" help="(-pair_in) "/>
@@ -56,5 +56,5 @@
   <help>Util which can be used to evaluate labeled pair ratios on MRM features.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_MRMPairFinder.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_MRMPairFinder.html</help>
 </tool>