diff MRMTransitionGroupPicker.xml @ 7:d88d659e7d2c draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/MRMTransitionGroupPicker.xml	Tue Mar 20 14:52:56 2018 -0400
+++ b/MRMTransitionGroupPicker.xml	Wed May 15 08:26:02 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>MRMTransitionGroupPicker
+  <command detect_errors="aggressive"><![CDATA[MRMTransitionGroupPicker
 
 #if $param_in:
   -in $param_in
@@ -109,7 +109,7 @@
   -algorithm:compute_peak_quality
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="Input file" help="(-in) "/>
     <param name="param_tr" type="data" format="tabular,traml" optional="False" label="transition file ('TraML' or 'csv')" help="(-tr) "/>
@@ -158,5 +158,5 @@
   <help>Picks peaks in SRM/MRM chromatograms.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_MRMTransitionGroupPicker.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_MRMTransitionGroupPicker.html</help>
 </tool>